Clone LP08774 Report

Search the DGRC for LP08774

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:87
Well:74
Vector:pOT2
Associated Gene/TranscriptCG5384-RA
Protein status:LP08774.pep: gold
Sequenced Size:1553

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5384 2008-04-29 Release 5.5 accounting
CG5384 2008-04-29 Picked prior to 5.5
CG5384 2008-08-15 Release 5.9 accounting
CG5384 2008-12-18 5.12 accounting

Clone Sequence Records

LP08774.complete Sequence

1553 bp assembled on 2007-11-15

GenBank Submission: BT031279

> LP08774.complete
TATAAAAGAAAAAATTAGCCATGCCCGCATTTAAAGTTAAGGTGAAGTGG
GGCCGGGAGCTCTACACAGATATCGTTGTAAACACCGACGAGGAGCCGAT
TTTGTTTAAGGCTCAGTTGTTTGCCCTCACTGGCGTTCAACCGGATCGCC
AGAAAGTTATGTGCAAGGGCGGCATTCTGAAGGATGACCAGTGGAATCTG
CAGATCAAGGACGGCGCTGTGGTCCTGTTGCTGGGCAGCAAGGAAAGTGT
TCCAGAAGTGCCTGCCACTCCTGTCAAATTCATTGAGGACATGAATGAAG
CTGAGGCAGCCACAGCGATGCGTCTACCGGCTGGGCTGACAAATCTGGGC
AATACGTGCTACATGAATGCCACTGTCCAGTGCCTGAATGCAGTGCCCGA
GCTTCGCACTGCCCTGAGCACTTTCAGTAATGATGGAACCGACACTATGT
CGACCGCATTTTCCATATCGTCTGCCATGAAGTCTATATTTGCTCAAATG
GAGAAGGGCACCACCGTGACGCCAATTGTGCTGCTGCAGGCATTGCACCG
GGCATCACCGCAATTTGCCCAGACTGGCGAAAATGGCACATACAGGCAGC
AGGACGCCAATGAGTGCTGGGCGGAGATCCTGAAAATGTTGCAGCAAAAG
CTGCGGCCAAAAAACCAGGAACCCTCGAATACTGTCCAGAAAAGGCACAG
CTCGTTTATCGACCAGTTTTTTGGTGGCACTTTTGAAGTTAAGATGAGCT
CAGAAGAGGATCCCGATGAACCTTCAACAGTAACAAGCGAAAATTTCTTG
CAGTTAAGTTGCTTCATTTCCATGGATGTGAAGTACATGCAGAGTGGTCT
GAAATCTAAAATGAAAGAGCAGCTGGTGAAAAAATCAGAAACCCTGGGAC
GCGATGCAAAGTACATTCGAACTTACTTGGTGAGCCGACTTCCAGCCTAT
CTCACCGTACAATTCGTGCGCTTTCAATACAAAGGAAAGGAGGGCATAAA
TGCCAAGGTGTTGAAGGATATCAAATTCCCCATTGACTTCGATGCCTTTG
AGTTGTGTACCCCCGAATTGCAAAACAAGCTCTGCCCAATGCGTTCGAAA
TTCAAGGATTTGGAAGACAAGAAAATGGAAGTTGACGTTGTCAAACGCAA
TGAACCCAACGAAGAGAAGAAGGACGTTAAGTACGAGCAGTTCTGGTTCG
ACGACGACTTGGGCAGCAACAATTCGGGATACTATACGCTGCAGGCGGTG
CTCACGCACAAGGGACGCTCCAGTTCGTCGGGTCATTATGTGGCCTGGGT
TCGCTCCAGCGGCGATGTGTGGTTCAAGTTCGATGATGATGAGGTCTCCG
CCGTGGCCACGGACGAGATTTTGCGGCTTTCCGGTGGCGGAGACTGGCAT
TGCGCCTATGTCCTGTTATATGCGCCCAGACGTTTGGAGAAACTATAAGT
AATTGTGTTAACGTCATTACATTTGTATTGTTAATATAATAATTCTGAAT
AAATAACCAAATCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

LP08774.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5384-RA 1709 CG5384-RA 143..1660 1..1518 7575 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10311171..10311763 1516..924 2950 99.8 Minus
chr2L 23010047 chr2L 10312161..10312544 700..317 1920 100 Minus
chr2L 23010047 chr2L 10312918..10313096 213..35 895 100 Minus
chr2L 23010047 chr2L 10311939..10312097 857..699 795 100 Minus
chr2L 23010047 chr2L 10312756..10312860 317..213 525 100 Minus
chr2L 23010047 chr2L 10311817..10311882 923..858 330 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10312314..10312908 1518..924 2960 99.8 Minus
2L 23513712 2L 10313306..10313689 700..317 1920 100 Minus
2L 23513712 2L 10314063..10314241 213..35 895 100 Minus
2L 23513712 2L 10313084..10313242 857..699 795 100 Minus
2L 23513712 2L 10313901..10314005 317..213 525 100 Minus
2L 23513712 2L 10312962..10313027 923..858 330 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10312314..10312908 1518..924 2960 99.8 Minus
2L 23513712 2L 10313306..10313689 700..317 1920 100 Minus
2L 23513712 2L 10314063..10314241 213..35 895 100 Minus
2L 23513712 2L 10313084..10313242 857..699 795 100 Minus
2L 23513712 2L 10313901..10314005 317..213 525 100 Minus
2L 23513712 2L 10312962..10313027 923..858 330 100 Minus
2L 23513712 2L 10314296..10314331 36..1 180 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:36:34 has no hits.

LP08774.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:37:28 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10311171..10311763 924..1516 99 <- Minus
chr2L 10311817..10311882 858..923 100 <- Minus
chr2L 10311939..10312095 701..857 100 <- Minus
chr2L 10312161..10312543 318..700 100 <- Minus
chr2L 10312756..10312860 213..317 100 <- Minus
chr2L 10312919..10313094 37..212 100 <- Minus
chr2L 10313151..10313186 1..36 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:39:25 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
CG5384-RA 1..1428 21..1448 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:05:32 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
CG5384-RA 1..1428 21..1448 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:21:18 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
CG5384-RA 1..1428 21..1448 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:51:51 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
CG5384-RA 1..1428 21..1448 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:08:38 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
CG5384-RA 1..1428 21..1448 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:59:44 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
CG5384-RA 66..1581 1..1516 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:05:32 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
CG5384-RA 66..1581 1..1516 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:21:18 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
CG5384-RA 40..1555 1..1516 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:51:51 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
CG5384-RA 66..1581 1..1516 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:08:38 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
CG5384-RA 40..1555 1..1516 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:28 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10312316..10312908 924..1516 99 <- Minus
2L 10312962..10313027 858..923 100 <- Minus
2L 10313084..10313240 701..857 100 <- Minus
2L 10313306..10313688 318..700 100 <- Minus
2L 10313901..10314005 213..317 100 <- Minus
2L 10314064..10314239 37..212 100 <- Minus
2L 10314296..10314331 1..36 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:28 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10312316..10312908 924..1516 99 <- Minus
2L 10312962..10313027 858..923 100 <- Minus
2L 10313084..10313240 701..857 100 <- Minus
2L 10313306..10313688 318..700 100 <- Minus
2L 10313901..10314005 213..317 100 <- Minus
2L 10314064..10314239 37..212 100 <- Minus
2L 10314296..10314331 1..36 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:28 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10312316..10312908 924..1516 99 <- Minus
2L 10312962..10313027 858..923 100 <- Minus
2L 10313084..10313240 701..857 100 <- Minus
2L 10313306..10313688 318..700 100 <- Minus
2L 10313901..10314005 213..317 100 <- Minus
2L 10314064..10314239 37..212 100 <- Minus
2L 10314296..10314331 1..36 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:21:18 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10312316..10312908 924..1516 99 <- Minus
arm_2L 10312962..10313027 858..923 100 <- Minus
arm_2L 10313084..10313240 701..857 100 <- Minus
arm_2L 10313306..10313688 318..700 100 <- Minus
arm_2L 10313901..10314005 213..317 100 <- Minus
arm_2L 10314064..10314239 37..212 100 <- Minus
arm_2L 10314296..10314331 1..36 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:57:43 Download gff for LP08774.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10312316..10312908 924..1516 99 <- Minus
2L 10312962..10313027 858..923 100 <- Minus
2L 10313084..10313240 701..857 100 <- Minus
2L 10313306..10313688 318..700 100 <- Minus
2L 10313901..10314005 213..317 100 <- Minus
2L 10314064..10314239 37..212 100 <- Minus
2L 10314296..10314331 1..36 100   Minus

LP08774.hyp Sequence

Translation from 20 to 1447

> LP08774.hyp
MPAFKVKVKWGRELYTDIVVNTDEEPILFKAQLFALTGVQPDRQKVMCKG
GILKDDQWNLQIKDGAVVLLLGSKESVPEVPATPVKFIEDMNEAEAATAM
RLPAGLTNLGNTCYMNATVQCLNAVPELRTALSTFSNDGTDTMSTAFSIS
SAMKSIFAQMEKGTTVTPIVLLQALHRASPQFAQTGENGTYRQQDANECW
AEILKMLQQKLRPKNQEPSNTVQKRHSSFIDQFFGGTFEVKMSSEEDPDE
PSTVTSENFLQLSCFISMDVKYMQSGLKSKMKEQLVKKSETLGRDAKYIR
TYLVSRLPAYLTVQFVRFQYKGKEGINAKVLKDIKFPIDFDAFELCTPEL
QNKLCPMRSKFKDLEDKKMEVDVVKRNEPNEEKKDVKYEQFWFDDDLGSN
NSGYYTLQAVLTHKGRSSSSGHYVAWVRSSGDVWFKFDDDEVSAVATDEI
LRLSGGGDWHCAYVLLYAPRRLEKL*

LP08774.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5384-PB 475 CG5384-PB 1..475 1..475 2473 100 Plus
CG5384-PA 475 CG5384-PA 1..475 1..475 2473 100 Plus

LP08774.pep Sequence

Translation from 20 to 1447

> LP08774.pep
MPAFKVKVKWGRELYTDIVVNTDEEPILFKAQLFALTGVQPDRQKVMCKG
GILKDDQWNLQIKDGAVVLLLGSKESVPEVPATPVKFIEDMNEAEAATAM
RLPAGLTNLGNTCYMNATVQCLNAVPELRTALSTFSNDGTDTMSTAFSIS
SAMKSIFAQMEKGTTVTPIVLLQALHRASPQFAQTGENGTYRQQDANECW
AEILKMLQQKLRPKNQEPSNTVQKRHSSFIDQFFGGTFEVKMSSEEDPDE
PSTVTSENFLQLSCFISMDVKYMQSGLKSKMKEQLVKKSETLGRDAKYIR
TYLVSRLPAYLTVQFVRFQYKGKEGINAKVLKDIKFPIDFDAFELCTPEL
QNKLCPMRSKFKDLEDKKMEVDVVKRNEPNEEKKDVKYEQFWFDDDLGSN
NSGYYTLQAVLTHKGRSSSSGHYVAWVRSSGDVWFKFDDDEVSAVATDEI
LRLSGGGDWHCAYVLLYAPRRLEKL*

LP08774.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14113-PA 477 GF14113-PA 1..477 1..475 2416 93.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23948-PA 475 GG23948-PA 1..475 1..475 2534 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13560-PA 486 GH13560-PA 1..485 1..474 2113 80.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
Usp14-PB 475 CG5384-PB 1..475 1..475 2473 100 Plus
Usp14-PA 475 CG5384-PA 1..475 1..475 2473 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18264-PA 481 GI18264-PA 1..480 1..474 2150 82.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18981-PA 477 GL18981-PA 1..477 1..475 2219 85.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18840-PA 431 GA18840-PA 1..431 47..475 2001 85.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11758-PA 475 GM11758-PA 1..475 1..475 2550 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22275-PA 475 GD22275-PA 1..475 1..475 2555 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17524-PA 481 GJ17524-PA 1..480 1..474 2164 82.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18788-PA 557 GK18788-PA 87..557 4..475 2082 81 Plus
Dwil\GK24786-PA 472 GK24786-PA 1..472 1..475 2047 79.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26107-PA 475 GE26107-PA 1..475 1..475 2539 98.9 Plus