Clone LP08815 Report

Search the DGRC for LP08815

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:88
Well:15
Vector:pOT2
Associated Gene/TranscriptCG17930-RA
Protein status:LP08815.pep: gold
Preliminary Size:1682
Sequenced Size:1660

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17930 2001-01-01 Release 2 assignment
CG17930 2001-10-10 Blastp of sequenced clone
CG17930 2003-01-01 Sim4 clustering to Release 3
CG17930 2008-04-29 Release 5.5 accounting
CG17930 2008-08-15 Release 5.9 accounting
CG17930 2008-12-18 5.12 accounting

Clone Sequence Records

LP08815.complete Sequence

1660 bp (1660 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061551

> LP08815.complete
CCAATCCGAACGAATCAATCCAGCTCCTTGCAAGGCAAGGTAAATTTTGA
ACGCTGTTTATTATATAAAGCAAACTATGACGACCACATATGTCACTGCG
GGTCCAGTGCCCGTCCAGCAAACCACATACATCACCACTGGACCCCAGCA
GACCACGTATATCACCAATGGACGCCAACAACAACCACCACCGCCCCCAC
CACCAACCACGGTGATCATCACCACCCAATCGAACAGCCGATGGGCAACC
CCTACTCAAACGCAATCTGGAACAGCAGCTACCCTTCTCTTTGTGTATGC
TGGTATGGACATGGCCCAAGGTCTTGGTTGGAACTTGACTGCCGTTTCCG
CCAACACCCTGGAGTTCCAGTACAGTTGGTTTATTGGCGTTATTATCGGA
GCTGTGGTGTCCGCCATTACATCAGCATTTCTGCCCAAAATAGTATTTTA
TGGTCTGGGTGGTGTGATGAACCTAATTGACGCCATTATCTTTGTGAGTG
CTCCATATGAGTACGAGTCGATCCTGGCCGCCCGATATGTGGGAGGAGTG
GGCATTGGGTTAATCACTGTGCCATTCCTAATCCACAGCGCAGAGATCGC
TTCGAGTACCAACAGAGGAACCTGCTGTGCATTGGAGCAATATGGTCTGG
CATTGGGAGTGGCCATTCAAGTAATCTACGACTCACAGTGGTCTCAGGGA
TTGGGCATGACCATCAATCGAGTACACGGAATTTTTGGAATCGTTTTTAC
GGCCATTGCGCTGGGAAGTGTAGCCATCACGATCGACTCGCCGATCTTCT
ATATCCGCCAGAACCAGGAGCAGAAGGCACGTGCCAGTGTGAAGCAGCTA
ATGGGATCCTATTGGACTCGAGAGGCTGGAGATCGAGCCTACGACGAGGC
AAAGCTATACGTGGTGGAAGGCAGCGCCCAAGGAGTAGGCGAGCAGCTGG
GAGAGTCTATGATGCCCTTTCTCAAGCTGCTGCTCTTCCGCTGCTTCGTT
GCTTTCACCTTCTCGGTGCCACTGTCATATTCAATACTGACAACCACGGA
GCTGGTGGAGGGCACCCTGCACTCCTGGCCCACGATTATATTTGGACTTC
TTCGTCTGATCGGTGCCCTGATCACCTTCGCCGTTCTGGACACCGTGGGC
CGGAAATTTGTCTCACTACTTGGACTCATGTGCATGGCTGGATTAATGCT
GGGCATGGCCGGAGTCTACGGGGACTACGGGCACATCTTCGACGATTACT
TTATGTGGCAAGTGTGCCGTCTGGGCATGGCATTCCAGTTCTTCGCCGGT
TTCTTCATCTGCAGCTCATCCGCTTATCTGGGCGAGGCTTTTCCGATGAG
AGTGAAACCCTTCTTGATTGGCCTGATCGTGTGTTTGGAGCAGGTGATAC
ATATCATTGTGATCGTCAAGTTTGTTCCCACCGCAGAGTTCTATTACACG
TACTTTGTCGCTGTCGGAATTATTATGGTAATAGGCCTCGTAGCTTTTGC
CGTTCTAATGCCAGAAACCCGAGGATTGACGCTAAGACAGGCAGGCGAAC
GATTCCGCCGGGTCCACGATGTCATGGCCTACTAGGTGGCTTCTATTTAT
TGTTTGTCCAATAAACTGTTGACCTTAAATAACTGAAAAAAAAAAAAAAA
AAAAAAAAAA

LP08815.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17930-RA 1757 CG17930-RA 116..1751 1..1636 8180 100 Plus
CG17929-RB 1691 CG17929-RB 1282..1355 1292..1365 205 85.1 Plus
CG6901-RA 1735 CG6901-RA 1307..1377 1278..1348 190 84.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12153135..12154318 452..1635 5785 99.2 Plus
chr3R 27901430 chr3R 12152563..12152840 1..278 1390 100 Plus
chr3R 27901430 chr3R 12152898..12153074 276..452 855 98.9 Plus
chr3R 27901430 chr3R 12151617..12151690 1292..1365 205 85.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16328439..16329623 452..1636 5925 100 Plus
3R 32079331 3R 16327867..16328144 1..278 1390 100 Plus
3R 32079331 3R 16328202..16328378 276..452 885 100 Plus
3R 32079331 3R 16326922..16326995 1292..1365 205 85.1 Plus
3R 32079331 3R 16324740..16324810 1278..1348 190 84.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16069270..16070454 452..1636 5925 100 Plus
3R 31820162 3R 16068698..16068975 1..278 1390 100 Plus
3R 31820162 3R 16069033..16069209 276..452 885 100 Plus
3R 31820162 3R 16067753..16067826 1292..1365 205 85.1 Plus
3R 31820162 3R 16065571..16065641 1278..1348 190 84.5 Plus
Blast to na_te.dros performed 2019-03-15 19:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7048..7115 1005..940 137 69.1 Minus

LP08815.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:25:14 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12152563..12152840 1..278 100 -> Plus
chr3R 12152901..12153073 279..451 98 -> Plus
chr3R 12153135..12154318 452..1635 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:39:27 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 1..1509 77..1585 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:17 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 1..1509 77..1585 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:49:48 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 1..1509 77..1585 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:14 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 1..1509 77..1585 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:44 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 1..1509 77..1585 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:38:19 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 18..1652 1..1635 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:17 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 18..1652 1..1635 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:49:48 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 19..1653 1..1635 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:14 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 18..1652 1..1635 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:44 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 19..1653 1..1635 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:25:14 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16328205..16328377 279..451 100 -> Plus
3R 16327867..16328144 1..278 100 -> Plus
3R 16328439..16329622 452..1635 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:25:14 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16328205..16328377 279..451 100 -> Plus
3R 16327867..16328144 1..278 100 -> Plus
3R 16328439..16329622 452..1635 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:25:14 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16328205..16328377 279..451 100 -> Plus
3R 16327867..16328144 1..278 100 -> Plus
3R 16328439..16329622 452..1635 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:49:48 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12153589..12153866 1..278 100 -> Plus
arm_3R 12153927..12154099 279..451 100 -> Plus
arm_3R 12154161..12155344 452..1635 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:22 Download gff for LP08815.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16068698..16068975 1..278 100 -> Plus
3R 16069036..16069208 279..451 100 -> Plus
3R 16069270..16070453 452..1635 100   Plus

LP08815.pep Sequence

Translation from 76 to 1584

> LP08815.pep
MTTTYVTAGPVPVQQTTYITTGPQQTTYITNGRQQQPPPPPPPTTVIITT
QSNSRWATPTQTQSGTAATLLFVYAGMDMAQGLGWNLTAVSANTLEFQYS
WFIGVIIGAVVSAITSAFLPKIVFYGLGGVMNLIDAIIFVSAPYEYESIL
AARYVGGVGIGLITVPFLIHSAEIASSTNRGTCCALEQYGLALGVAIQVI
YDSQWSQGLGMTINRVHGIFGIVFTAIALGSVAITIDSPIFYIRQNQEQK
ARASVKQLMGSYWTREAGDRAYDEAKLYVVEGSAQGVGEQLGESMMPFLK
LLLFRCFVAFTFSVPLSYSILTTTELVEGTLHSWPTIIFGLLRLIGALIT
FAVLDTVGRKFVSLLGLMCMAGLMLGMAGVYGDYGHIFDDYFMWQVCRLG
MAFQFFAGFFICSSSAYLGEAFPMRVKPFLIGLIVCLEQVIHIIVIVKFV
PTAEFYYTYFVAVGIIMVIGLVAFAVLMPETRGLTLRQAGERFRRVHDVM
AY*

LP08815.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18491-PA 500 GF18491-PA 1..500 1..502 1928 76 Plus
Dana\GF18489-PA 486 GF18489-PA 5..480 25..496 1093 45.3 Plus
Dana\GF18490-PA 434 GF18490-PA 4..434 61..502 1078 46.7 Plus
Dana\GF23845-PA 553 GF23845-PA 116..545 61..493 423 30 Plus
Dana\GF23843-PA 473 GF23843-PA 17..467 40..495 409 26.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16997-PA 504 GG16997-PA 1..504 1..502 2454 95 Plus
Dere\GG16996-PA 491 GG16996-PA 5..488 18..499 1198 46.9 Plus
Dere\GG16995-PA 490 GG16995-PA 4..490 1..502 1167 45.8 Plus
Dere\GG13988-PA 571 GG13988-PA 43..565 14..495 428 27.5 Plus
Dere\GG13984-PA 473 GG13984-PA 8..467 41..495 427 26.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19545-PA 498 GH19545-PA 2..498 26..502 1343 53.2 Plus
Dgri\GH19546-PA 492 GH19546-PA 8..492 20..502 1339 54.1 Plus
Dgri\GH19544-PA 444 GH19544-PA 12..444 70..502 1161 48.3 Plus
Dgri\GH16562-PA 534 GH16562-PA 76..526 41..494 451 30.7 Plus
Dgri\GH16560-PA 479 GH16560-PA 2..473 21..495 449 28 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17930-PA 502 CG17930-PA 1..502 1..502 2583 100 Plus
CG17929-PB 491 CG17929-PB 1..491 1..502 1165 47.2 Plus
CG6901-PA 485 CG6901-PA 1..485 1..502 1163 46.6 Plus
CG42826-PA 473 CG42826-PA 8..467 41..495 496 26.8 Plus
CG42825-PA 518 CG6640-PB 22..512 10..495 461 29.2 Plus
CG32054-PA 563 CG32054-PA 96..557 38..495 422 27.5 Plus
CG32053-PA 496 CG32053-PA 55..489 61..494 409 28 Plus
CG14160-PA 483 CG14160-PA 20..482 56..496 348 27.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22946-PA 496 GI22946-PA 1..496 1..502 1400 55.8 Plus
Dmoj\GI22944-PA 492 GI22944-PA 1..492 1..502 1326 50.8 Plus
Dmoj\GI22943-PA 488 GI22943-PA 12..471 48..499 1149 49.6 Plus
Dmoj\GI13854-PA 489 GI13854-PA 3..486 14..494 404 28.9 Plus
Dmoj\GI13851-PA 512 GI13851-PA 48..506 33..495 401 27.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21599-PA 497 GL21599-PA 3..497 2..502 1704 70.1 Plus
Dper\GL21598-PA 493 GL21598-PA 1..493 1..502 1324 52.7 Plus
Dper\GL11795-PA 472 GL11795-PA 4..466 34..495 398 26.4 Plus
Dper\GL11806-PA 537 GL11806-PA 78..529 43..493 339 27.6 Plus
Dper\GL11817-PA 490 GL11817-PA 35..484 50..495 335 26.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14732-PA 497 GA14732-PA 3..497 2..502 1749 69.7 Plus
Dpse\GA26344-PA 499 GA26344-PA 70..499 72..502 1305 57.6 Plus
Dpse\GA23810-PA 472 GA23810-PA 37..466 67..495 394 27.5 Plus
Dpse\GA23811-PA 561 GA23811-PA 102..553 43..493 337 27.4 Plus
Dpse\GA16641-PA 490 GA16641-PA 35..483 50..494 334 26.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15149-PA 502 GM15149-PA 1..502 1..502 2572 97.8 Plus
Dsec\GM15148-PA 491 GM15148-PA 1..488 1..499 1194 47.5 Plus
Dsec\GM15147-PA 490 GM15147-PA 3..490 1..502 1190 46.4 Plus
Dsec\GM24821-PA 916 GM24821-PA 461..910 42..495 450 30.5 Plus
Dsec\GM24822-PA 553 GM24822-PA 81..547 37..495 403 27.7 Plus
Dsec\GM24821-PA 916 GM24821-PA 8..388 41..415 342 26.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19091-PA 500 GD19091-PA 1..500 1..502 2553 97.4 Plus
Dsim\GD19090-PA 491 GD19090-PA 1..488 1..499 1207 48.1 Plus
Dsim\GD19089-PA 491 GD19089-PA 4..491 1..502 1192 46.5 Plus
Dsim\GD12875-PA 496 GD12875-PA 17..490 19..495 397 27.6 Plus
Dsim\GD12874-PA 562 GD12874-PA 89..556 32..495 355 27.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23724-PA 493 GJ23724-PA 1..493 1..502 1411 55.1 Plus
Dvir\GJ23723-PA 473 GJ23723-PA 6..473 38..502 1219 50.9 Plus
Dvir\GJ11716-PA 562 GJ11716-PA 95..554 38..494 441 28.7 Plus
Dvir\GJ11717-PA 544 GJ11717-PA 118..541 71..494 435 29.8 Plus
Dvir\GJ11715-PA 485 GJ11715-PA 36..479 52..495 434 29.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21730-PA 532 GK21730-PA 1..532 1..502 1390 54.9 Plus
Dwil\GK13773-PA 495 GK13773-PA 1..495 1..502 995 46 Plus
Dwil\GK13774-PA 798 GK13774-PA 17..371 8..358 743 43.7 Plus
Dwil\GK24094-PA 484 GK24094-PA 27..478 24..495 476 27.8 Plus
Dwil\GK24096-PA 536 GK24096-PA 102..533 61..498 412 28.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24390-PA 501 GE24390-PA 1..501 1..502 2445 94.2 Plus
Dyak\GE24389-PA 491 GE24389-PA 1..484 1..495 1224 48.6 Plus
Dyak\GE24387-PA 490 GE24387-PA 8..490 7..502 1173 46.7 Plus
Dyak\GE20283-PA 925 GE20283-PA 470..919 42..495 421 29 Plus
Dyak\GE20284-PA 573 GE20284-PA 113..567 49..495 389 28.9 Plus
Dyak\GE20283-PA 925 GE20283-PA 37..394 60..415 330 26.6 Plus

LP08815.hyp Sequence

Translation from 76 to 1584

> LP08815.hyp
MTTTYVTAGPVPVQQTTYITTGPQQTTYITNGRQQQPPPPPPPTTVIITT
QSNSRWATPTQTQSGTAATLLFVYAGMDMAQGLGWNLTAVSANTLEFQYS
WFIGVIIGAVVSAITSAFLPKIVFYGLGGVMNLIDAIIFVSAPYEYESIL
AARYVGGVGIGLITVPFLIHSAEIASSTNRGTCCALEQYGLALGVAIQVI
YDSQWSQGLGMTINRVHGIFGIVFTAIALGSVAITIDSPIFYIRQNQEQK
ARASVKQLMGSYWTREAGDRAYDEAKLYVVEGSAQGVGEQLGESMMPFLK
LLLFRCFVAFTFSVPLSYSILTTTELVEGTLHSWPTIIFGLLRLIGALIT
FAVLDTVGRKFVSLLGLMCMAGLMLGMAGVYGDYGHIFDDYFMWQVCRLG
MAFQFFAGFFICSSSAYLGEAFPMRVKPFLIGLIVCLEQVIHIIVIVKFV
PTAEFYYTYFVAVGIIMVIGLVAFAVLMPETRGLTLRQAGERFRRVHDVM
AY*

LP08815.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17930-PA 502 CG17930-PA 1..502 1..502 2583 100 Plus
CG17929-PB 491 CG17929-PB 1..491 1..502 1165 47.2 Plus
CG6901-PA 485 CG6901-PA 1..485 1..502 1163 46.6 Plus
CG42826-PA 473 CG42826-PA 8..467 41..495 496 26.8 Plus
CG42825-PA 518 CG6640-PB 22..512 10..495 461 29.2 Plus