Clone LP08901 Report

Search the DGRC for LP08901

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:89
Well:1
Vector:pOT2
Associated Gene/TranscriptCG5316-RA
Protein status:LP08901.pep: gold
Sequenced Size:2216

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5316 2002-11-15 Blastp of sequenced clone
CG5316 2003-01-01 Sim4 clustering to Release 3
CG5316 2008-04-29 Release 5.5 accounting
CG5316 2008-08-15 Release 5.9 accounting
CG5316 2008-12-18 5.12 accounting

Clone Sequence Records

LP08901.complete Sequence

2216 bp (2216 high quality bases) assembled on 2002-11-15

GenBank Submission: BT011192.1

> LP08901.complete
CAACTGCCAGTAAGAAAAGAAAGCAGTTCTTAGCAAGTTAACAAATAAAT
AAATGACAAAATAATAACGAAATATATAATAACAAAATAAATAACGAAAA
TATTTGCTTTTGTGCAAATACGCTCACAGAAATCGATAAAAGTCTCGCCG
TTGCTGCAATTCCAAGCAAATCAGGCAGTAGCATTTGTGATGTCCTGGTC
AAGTGCACTAATCAAAGATATCTCGAAACCAGAAAATTTGATCATTTCGT
CAGAAATCGCAGTGGTCATAGCAGACAAGTTTCCCAAGGCGCAGCATCAC
TACTTGGTGCTACCATTGGCCGACATTCCCAGCATCTTTCACTTGAACCG
GAGCCATCTGTCGCTTTTGGAGGAGCTGCATCTGCTGGCCAGGAACGTTG
TGGAAGTGAAAGGAGTCCGGTGGCAGGACTTCAACGTGGGATTTCACGCG
GAGCCGAGCATGCAAAGGCTCCACCTGCACGTCATCTCCAAGGACTTCGT
ATCAACAAGCCTGAAGACCAAGAAGCATTGGAACTCATTCAACACCGAGC
TGTTTGTGCCCTACACAAGTAAGGCTATTAGAACACGGCGCAGGCTACAG
GCTTCATGAGCGAAAAACAGATAAATCGAATGATCTAGTTAGAAAATAGA
GATTTGCCGGCGGTGCCAATTTTTATGAGCATTCCCATATAGAAAAGCTT
TACGCCCAGCTGGAGAAGGAGAATAGCATTTCGCGACTCCCGAAATCACT
AAAAGACGAGCTGCTGGCCAAGCCACTCATTTGTAATCAGTGCGAGTTTG
TTGCAAGAAATTTGCCATCACTTAAGGGGCATCTGGTGGGGCACCTTCAA
GATCCGAAATCAGTTTGCCAGCGAGTCCGACTAGGGAACCAGTTCTTTCC
CACAGCTGGTTACAGAACGTCAGAACTTGCATATTGTTTCGATTTCGTGG
ATTTCTACGAATACAAAAAGCAAATGGAGGTGGATAAATTGGCATATATC
CGAGATGAGCTGCAGCGCAAGCTAAATGATAAGAGGAACTTCCTTATCGA
GAGTGACCGGGCGGTGGTCATGAAAGCGGACTATCCTAAATCGCAATACC
ACTTTAGGGTGGTGGCCAAGGAAGAGTTCAGGGATATAACTCAGCTAACC
GAAGCGCAGCTGCCCCTGCTGGATCACATGATGGATCTGGCGAATCAAAT
CATCGAGAAGCAGAAACACCTGGAGTCGCGTAATTTTCTCATCGGTTTCA
AAGTCAATACTTTCTGGAATCGTCTAAATCTACATGTTATTTCTAACGAC
TTCTATTCCATGGCCATGAAACGTATAAGTCACTGGAATAGTTTCAATAC
GGAACTATTTATGCCCTTTCAAATTGCGTATATGATGCTCAGTGTTCAGG
GATCCATTGAATCCATTTCGGAGGAGACGTACAATAATTTGCAAGAGAAG
ACGCCATTGCGATGCAACCAGTGCGAATTTGTTACTAATATGTTGCTGGA
TCTAAAAGCTCACCTGTATCAGCACTGGCAGCGCAAGGAGGACGAGCGCG
ATCAGAAGAAAAAAGTCGATAAAATAATCCAAATGATATCTGAGACCAAA
CTGGATGAGGCAGAGGCAAAGCCGAAGCTGTTGAATGAAGAGGAACCTAT
TCAAGCTCAGCCCGTTGCCGCTATCGCCCAGTATCCCAATGAACATCTAG
GCAAGCCCTTAACGCCGCAACAGCAGCCGGGCAAGCAGCAGGCCCAGAAT
GTTTACGACAAAAACATTAACGGGCCTTCTGTGAATATGATGAATCAGAA
CAATCCCAACAATCCGTTCCGGAACACTCCGCACCTTAATAGACAATCAC
AGAAACCGCCGCATCCCCGCTCTGGGCCCCGTGGACCAATGGCTCCTTGG
ACTGGTCCGCGCTTTCCGTGTCATCAACAGCAGAACAGATTCAGGCCTCC
AGGATTTAACGCATGTCGGCAACCTTATCCACCCTATCATTCAGGCCATC
AGCAATTTCCGAATGCTTCATCAGTCGGCGGCGGTCAAACTGGGCTGCCA
GGTCAGGGACAGGGACCTAGACCGAAATGGAATTCAAATAAGATATTCAA
TCAACAGAACCGCCAAAATACAGTCCAAGCCCAGCCACAAGCCCAGAACC
AACAAACCAACCAGCAGCAGATTCAAAATTCGAATAAAAACCAAACTCCA
AAAAAAAAAAAAAAAA

LP08901.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5316.a 2633 CG5316.a 726..2240 694..2208 7575 100 Plus
CG5316-RB 2500 CG5316-RB 593..2107 694..2208 7575 100 Plus
CG5316.d 2686 CG5316.d 593..2107 694..2208 7575 100 Plus
CG5316-RB 2500 CG5316-RB 27..594 1..568 2840 100 Plus
CG5316.d 2686 CG5316.d 27..594 1..568 2840 100 Plus
CG5316.a 2633 CG5316.a 90..431 1..342 1710 100 Plus
CG5316.a 2633 CG5316.a 502..727 343..568 1130 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15228732..15229790 1141..2199 5250 99.7 Plus
chr3R 27901430 chr3R 15228188..15228643 696..1144 2080 97.6 Plus
chr3R 27901430 chr3R 15227780..15228132 343..695 1750 99.7 Plus
chr3R 27901430 chr3R 15227368..15227708 1..341 1615 98.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19404838..19405905 1141..2208 5340 100 Plus
3R 32079331 3R 19404301..19404749 696..1144 2245 100 Plus
3R 32079331 3R 19403893..19404245 343..695 1765 100 Plus
3R 32079331 3R 19403481..19403822 1..342 1710 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19145669..19146736 1141..2208 5340 100 Plus
3R 31820162 3R 19145132..19145580 696..1144 2245 100 Plus
3R 31820162 3R 19144724..19145076 343..695 1765 100 Plus
3R 31820162 3R 19144312..19144653 1..342 1710 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:11:37 has no hits.

LP08901.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:12:29 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15227462..15227709 95..342 97 -> Plus
chr3R 15227780..15228134 343..697 99 -> Plus
chr3R 15228190..15228643 698..1144 97 -> Plus
chr3R 15228736..15229790 1145..2199 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:39:32 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
CG5316-RB 370..1883 684..2199 99   Plus
CG5316-RB 1..369 190..558 100 == Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:03:50 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
CG5316-RB 1..369 190..558 100 == Plus
CG5316-RB 370..1883 684..2199 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:12:32 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
CG5316-RC 1..369 190..558 100 == Plus
CG5316-RC 370..1892 684..2208 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:54:04 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
CG5316-RB 1..369 190..558 100 == Plus
CG5316-RB 370..1883 684..2199 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:57 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
CG5316-RC 1..369 190..558 100 == Plus
CG5316-RC 370..1892 684..2208 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:22:36 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
CG5316-RC 34..464 127..558 99 == Plus
CG5316-RC 465..1978 684..2199 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:03:50 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
CG5316-RC 34..464 127..558 99 == Plus
CG5316-RC 465..1978 684..2199 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:32 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
CG5316-RA 14..2212 1..2199 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:54:05 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
CG5316-RC 34..464 127..558 99 == Plus
CG5316-RC 465..1978 684..2199 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:57 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
CG5316-RA 14..2212 1..2199 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:12:29 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19403481..19403822 1..342 100 -> Plus
3R 19403893..19404245 343..695 100 -> Plus
3R 19404301..19404749 696..1144 100 -> Plus
3R 19404842..19405896 1145..2199 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:12:29 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19403481..19403822 1..342 100 -> Plus
3R 19403893..19404245 343..695 100 -> Plus
3R 19404301..19404749 696..1144 100 -> Plus
3R 19404842..19405896 1145..2199 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:12:29 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19403481..19403822 1..342 100 -> Plus
3R 19403893..19404245 343..695 100 -> Plus
3R 19404301..19404749 696..1144 100 -> Plus
3R 19404842..19405896 1145..2199 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:32 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15229203..15229544 1..342 100 -> Plus
arm_3R 15229615..15229967 343..695 100 -> Plus
arm_3R 15230023..15230471 696..1144 100 -> Plus
arm_3R 15230564..15231618 1145..2199 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:26:19 Download gff for LP08901.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19144312..19144653 1..342 100 -> Plus
3R 19144724..19145076 343..695 100 -> Plus
3R 19145132..19145580 696..1144 100 -> Plus
3R 19145673..19146727 1145..2199 100   Plus

LP08901.pep Sequence

Translation from 189 to 608

> LP08901.pep
MSWSSALIKDISKPENLIISSEIAVVIADKFPKAQHHYLVLPLADIPSIF
HLNRSHLSLLEELHLLARNVVEVKGVRWQDFNVGFHAEPSMQRLHLHVIS
KDFVSTSLKTKKHWNSFNTELFVPYTSKAIRTRRRLQAS*

LP08901.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16551-PA 699 GF16551-PA 1..125 1..125 531 80 Plus
Dana\GF16551-PA 699 GF16551-PA 227..346 7..125 228 41.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23284-PA 206 GG23284-PA 1..126 1..126 546 90.5 Plus
Dere\GG23306-PA 417 GG23306-PA 1..124 11..134 441 64.5 Plus
Dere\GG23295-PA 385 GG23295-PA 10..128 7..124 222 41.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22294-PA 648 GH22294-PA 1..127 1..127 514 70.9 Plus
Dgri\GH22294-PA 648 GH22294-PA 198..321 5..127 252 40.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5316-PA 139 CG5316-PA 1..139 1..139 713 100 Plus
CG5316-PB 662 CG5316-PB 1..126 1..126 654 100 Plus
CG5316-PC 662 CG5316-PC 1..126 1..126 654 100 Plus
CG5316-PB 662 CG5316-PB 232..351 7..125 221 38.3 Plus
CG5316-PC 662 CG5316-PC 232..351 7..125 221 38.3 Plus
CG5316-PE 443 CG5316-PE 13..132 7..125 221 38.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23101-PA 176 GI23101-PA 1..127 1..127 445 73.2 Plus
Dmoj\GI23102-PA 333 GI23102-PA 13..136 5..127 251 38.7 Plus
Dmoj\GI16920-PA 422 GI16920-PA 31..157 12..139 238 41.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12649-PA 605 GL12649-PA 2..124 3..125 410 70.7 Plus
Dper\GL12649-PA 605 GL12649-PA 220..341 5..125 239 41.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18799-PB 638 GA18799-PB 34..156 3..125 407 70.7 Plus
Dpse\GA18799-PA 605 GA18799-PA 2..124 3..125 406 70.7 Plus
Dpse\GA18799-PB 638 GA18799-PB 253..374 5..125 239 41.8 Plus
Dpse\GA18799-PA 605 GA18799-PA 220..341 5..125 238 41.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26840-PA 191 GM26840-PA 1..126 1..126 561 92.1 Plus
Dsec\GM26841-PA 388 GM26841-PA 9..132 3..125 217 37.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19289-PA 191 GD19289-PA 1..126 1..126 554 92.1 Plus
Dsim\GD19290-PA 388 GD19290-PA 13..132 7..125 216 39.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22721-PA 176 GJ22721-PA 1..127 1..127 422 67.7 Plus
Dvir\GJ22722-PA 432 GJ22722-PA 8..128 18..139 246 42.3 Plus
Dvir\GJ22723-PA 374 GJ22723-PA 5..128 15..139 222 34.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13810-PA 192 GK13810-PA 1..125 1..125 513 76 Plus
Dwil\GK13811-PA 516 GK13811-PA 16..137 7..127 235 38.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25605-PA 354 GE25605-PA 1..126 1..126 556 89.7 Plus

LP08901.hyp Sequence

Translation from 973 to 2197

> LP08901.hyp
MEVDKLAYIRDELQRKLNDKRNFLIESDRAVVMKADYPKSQYHFRVVAKE
EFRDITQLTEAQLPLLDHMMDLANQIIEKQKHLESRNFLIGFKVNTFWNR
LNLHVISNDFYSMAMKRISHWNSFNTELFMPFQIAYMMLSVQGSIESISE
ETYNNLQEKTPLRCNQCEFVTNMLLDLKAHLYQHWQRKEDERDQKKKVDK
IIQMISETKLDEAEAKPKLLNEEEPIQAQPVAAIAQYPNEHLGKPLTPQQ
QPGKQQAQNVYDKNINGPSVNMMNQNNPNNPFRNTPHLNRQSQKPPHPRS
GPRGPMAPWTGPRFPCHQQQNRFRPPGFNACRQPYPPYHSGHQQFPNASS
VGGGQTGLPGQGQGPRPKWNSNKIFNQQNRQNTVQAQPQAQNQQTNQQQI
QNSNKNQT

LP08901.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5316-PD 572 CG5316-PD 130..537 1..408 2199 100 Plus
CG5316-PB 662 CG5316-PB 220..627 1..408 2199 100 Plus
CG5316-PC 662 CG5316-PC 220..627 1..408 2199 100 Plus
CG5316-PB 662 CG5316-PB 7..178 13..186 307 39.1 Plus
CG5316-PC 662 CG5316-PC 7..178 13..186 307 39.1 Plus
CG5316-PA 139 CG5316-PA 7..125 13..132 221 38.3 Plus
CG5316-PD 572 CG5316-PD 3..88 100..186 210 50.6 Plus