Clone LP08963 Report

Search the DGRC for LP08963

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:89
Well:63
Vector:pOT2
Associated Gene/TranscriptCG17593-RA
Protein status:LP08963.pep: gold
Sequenced Size:1718

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17593 2005-01-26 Blastp of sequenced clone
CG17593 2008-04-29 Release 5.5 accounting
CG17593 2008-08-15 Release 5.9 accounting
CG17593 2008-12-18 5.12 accounting

Clone Sequence Records

LP08963.complete Sequence

1718 bp (1718 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021368

> LP08963.complete
AGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTAACCTAGTTTTTTTT
TCTTAATTAGTGTGAAAAGTTTTAGGACATTTAAATAAATTATAACTTAA
GTGAACCGACTAGATTACGCCATCGTACTACCCCCAAGATGCGACCAGTA
TTTGCCTTCCTGCTCCTGGCGCTCATCTGCTTCGCCAGCACTAAGTCGGA
GAGCGACTTCGAGGAAGACGACAGTGATGATTTTGCCGAATTCGACGACG
GCAATTTTTACGCTGAGCCAGCGGCCAAGAATGCAGATTCGTTCTCCGGA
GGAGCAGGATCCAGCCACGGCGAGTCCCGCGACGATCCGCCTGCCAAGGA
GCCGCGGAAGCAAGCACAAAACCAGGAGAGCGACGAGGAGGACGGCCTTG
TCGAGGATGACGATGAGTTTGAGCACTTCCAGGATGAGGAAGAGTTCGAG
GGCTACGATGGCGGAGACTCCAAGGATCCGCCCATCGACCAAAAGGTTGA
GCCAAAACTGAACATACCAAACATCCCTCTGCACTTCCGCACCCACTGGG
ACTCCTACTGGATGGAGATGCTCATGGTGGCAGGGTTGTTGGCCTACTTC
GCCAACTTCTTTGCGGGAAAGGCCAAAAACGCGCGTTTGGCGCAGCTTTG
GTTCAGTACCCACAGAGCCCTGCTGGATGAGAACTTCGCCTTGGTCGGAG
ACGATGGCAAGGCGGAGAACGAGAATCCGGGACTGATAAAGGAGAGCGAG
AGTCTTTATACTCTCTGGTGCTCCGGCAGGACCTGTTGCGAAGGCATGCT
CGTCGAGCTGAAGATGATCAAGCGACAGGATCTGGTCTCCTTGGTGGCGG
GACTAATGCGCCCACAGCTGGACCAGGCCCACATCAAAATTGAACTCACA
CGCGGTGTAATGGATGCCTTTGTATTTGCAGTTGGTACCAAAAAGACAAT
TACCAAGCTCTTCAAAGAGTATACGGATCTGAGCAAGTTCTGTAGTCTAG
TCGGCAAGCCGGAGGATCGCTACAATGTACCCACCGGCTTTGGCGTGCTC
TCCGAAATTCCGGAGGCCACGTCCGCCATCCTCGAGTCACGTATTATCAC
TGCACTTAACAAGTACCAAAGCTATATCGATTACCTGCACATCTCGGACC
AGTTCAGTGGGCCCATCCAGCAGGAAGAGGGTGGCACCCTCAAGCAGCCC
GAAACCAAGGCCGTGCTTCTCGCAGGCTTCAATTTGCCGAAGCACGCCGA
AATGGAGACCATTAAGCCGTTGTTATTGTTGATCTTTTATTTAATGGAGC
GTTTAAAGACCTATCGCATGTCCAAGGAGGGCAAAGCCAAGTCGGACAAA
AACCGTCAGCGCGTGGAGGAGGAGTTCTTGAAGAGCACCCATGCCGCCCG
CGCCGAGGCTGCCGCTCAGAGACGTGAGGATAAGCGTAAGCAGGAGAAGG
AGCGCATTCTGGCCGACGAGGACCCAGAGAAGCAGCGCCGTTGGGAGGCT
AAGGAGCAGAAGCGCCAGGCCAAGAGGAATGCGCCCAAGATGAAGAGACT
GGCCGTCAAATCCCTGTAGATTTGTTTCAATTGTGCCATTTGCCGCAAGG
AGCGCACCTCATTAACGTACACAAACCGACCATTTGTAGATGTTCCTCTC
AAATGCCAGAATAAAGCAATATCTATTTGTTTCCTATGGAGCGCCAAAAC
AAAAAAAAAAAAAAAAAA

LP08963.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-RA 1968 CG17593-RA 142..1814 33..1705 8365 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3515292..3515846 427..981 2775 100 Plus
chr2L 23010047 chr2L 3514456..3514856 33..433 2005 100 Plus
chr2L 23010047 chr2L 3516312..3516684 1328..1700 1865 100 Plus
chr2L 23010047 chr2L 3515907..3516256 981..1330 1750 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3515714..3516268 427..981 2775 100 Plus
2L 23513712 2L 3514878..3515278 33..433 2005 100 Plus
2L 23513712 2L 3516734..3517111 1328..1705 1890 100 Plus
2L 23513712 2L 3516329..3516678 981..1330 1750 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3515714..3516268 427..981 2775 100 Plus
2L 23513712 2L 3514878..3515278 33..433 2005 100 Plus
2L 23513712 2L 3516734..3517111 1328..1705 1890 100 Plus
2L 23513712 2L 3516329..3516678 981..1330 1750 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:38:30 has no hits.

LP08963.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:39:18 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3514457..3514855 34..432 100 -> Plus
chr2L 3515298..3515846 433..981 100 -> Plus
chr2L 3515908..3516255 982..1329 100 -> Plus
chr2L 3516314..3516684 1330..1700 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:39:35 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 1..1431 139..1569 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:13:25 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 1..1431 139..1569 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:07:46 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 1..1431 139..1569 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:57:53 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 1..1431 139..1569 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:50 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 1..1431 139..1569 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:09:40 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 142..1809 33..1700 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:13:25 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 142..1809 33..1700 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:07:46 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 7..1674 33..1700 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:57:53 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 142..1809 33..1700 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:50 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 7..1674 33..1700 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:18 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3516330..3516677 982..1329 100 -> Plus
2L 3514879..3515277 34..432 100 -> Plus
2L 3515720..3516268 433..981 100 -> Plus
2L 3516736..3517106 1330..1700 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:18 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3516330..3516677 982..1329 100 -> Plus
2L 3514879..3515277 34..432 100 -> Plus
2L 3515720..3516268 433..981 100 -> Plus
2L 3516736..3517106 1330..1700 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:18 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3516330..3516677 982..1329 100 -> Plus
2L 3514879..3515277 34..432 100 -> Plus
2L 3515720..3516268 433..981 100 -> Plus
2L 3516736..3517106 1330..1700 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:07:46 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3514879..3515277 34..432 100 -> Plus
arm_2L 3515720..3516268 433..981 100 -> Plus
arm_2L 3516330..3516677 982..1329 100 -> Plus
arm_2L 3516736..3517106 1330..1700 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:33:23 Download gff for LP08963.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3514879..3515277 34..432 100 -> Plus
2L 3515720..3516268 433..981 100 -> Plus
2L 3516330..3516677 982..1329 100 -> Plus
2L 3516736..3517106 1330..1700 100   Plus

LP08963.pep Sequence

Translation from 138 to 1568

> LP08963.pep
MRPVFAFLLLALICFASTKSESDFEEDDSDDFAEFDDGNFYAEPAAKNAD
SFSGGAGSSHGESRDDPPAKEPRKQAQNQESDEEDGLVEDDDEFEHFQDE
EEFEGYDGGDSKDPPIDQKVEPKLNIPNIPLHFRTHWDSYWMEMLMVAGL
LAYFANFFAGKAKNARLAQLWFSTHRALLDENFALVGDDGKAENENPGLI
KESESLYTLWCSGRTCCEGMLVELKMIKRQDLVSLVAGLMRPQLDQAHIK
IELTRGVMDAFVFAVGTKKTITKLFKEYTDLSKFCSLVGKPEDRYNVPTG
FGVLSEIPEATSAILESRIITALNKYQSYIDYLHISDQFSGPIQQEEGGT
LKQPETKAVLLAGFNLPKHAEMETIKPLLLLIFYLMERLKTYRMSKEGKA
KSDKNRQRVEEEFLKSTHAARAEAAAQRREDKRKQEKERILADEDPEKQR
RWEAKEQKRQAKRNAPKMKRLAVKSL*

LP08963.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15240-PA 480 GF15240-PA 1..480 1..476 2189 91.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24949-PA 476 GG24949-PA 1..476 1..476 2508 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13691-PA 478 GH13691-PA 29..478 25..476 1947 83.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-PB 476 CG17593-PB 1..476 1..476 2472 100 Plus
CG17593-PA 476 CG17593-PA 1..476 1..476 2472 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23809-PA 475 GI23809-PA 20..475 17..476 1985 83.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18659-PA 477 GL18659-PA 1..477 1..476 2145 87.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14569-PA 477 GA14569-PA 1..477 1..476 2145 87.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18418-PA 476 GM18418-PA 1..476 1..476 2539 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23238-PA 452 GD23238-PA 1..452 1..476 2360 94.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21036-PA 477 GJ21036-PA 1..477 1..476 2036 82.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15447-PA 487 GK15447-PA 1..487 1..476 1945 80.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18240-PA 476 GE18240-PA 1..476 1..476 2502 98.1 Plus
Dyak\GE18241-PA 194 GE18241-PA 129..194 411..476 325 100 Plus
Dyak\GE18241-PA 194 GE18241-PA 72..120 50..98 235 91.8 Plus

LP08963.hyp Sequence

Translation from 138 to 1568

> LP08963.hyp
MRPVFAFLLLALICFASTKSESDFEEDDSDDFAEFDDGNFYAEPAAKNAD
SFSGGAGSSHGESRDDPPAKEPRKQAQNQESDEEDGLVEDDDEFEHFQDE
EEFEGYDGGDSKDPPIDQKVEPKLNIPNIPLHFRTHWDSYWMEMLMVAGL
LAYFANFFAGKAKNARLAQLWFSTHRALLDENFALVGDDGKAENENPGLI
KESESLYTLWCSGRTCCEGMLVELKMIKRQDLVSLVAGLMRPQLDQAHIK
IELTRGVMDAFVFAVGTKKTITKLFKEYTDLSKFCSLVGKPEDRYNVPTG
FGVLSEIPEATSAILESRIITALNKYQSYIDYLHISDQFSGPIQQEEGGT
LKQPETKAVLLAGFNLPKHAEMETIKPLLLLIFYLMERLKTYRMSKEGKA
KSDKNRQRVEEEFLKSTHAARAEAAAQRREDKRKQEKERILADEDPEKQR
RWEAKEQKRQAKRNAPKMKRLAVKSL*

LP08963.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-PB 476 CG17593-PB 1..476 1..476 2472 100 Plus
CG17593-PA 476 CG17593-PA 1..476 1..476 2472 100 Plus