Clone LP08967 Report

Search the DGRC for LP08967

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:89
Well:67
Vector:pOT2
Associated Gene/TranscriptCG5204-RA
Protein status:LP08967.pep: gold
Preliminary Size:2317
Sequenced Size:2382

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5204 2002-01-01 Sim4 clustering to Release 2
CG5204 2002-05-18 Blastp of sequenced clone
CG5204 2003-01-01 Sim4 clustering to Release 3
CG5204 2008-04-29 Release 5.5 accounting
CG5204 2008-08-15 Release 5.9 accounting
CG5204 2008-12-18 5.12 accounting

Clone Sequence Records

LP08967.complete Sequence

2382 bp (2382 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119072

> LP08967.complete
AAAGAAAGAATGACATTGCTATTTTTATAAAATATAAAATAAAACCTAAA
CCTTAATTCGATTTTGTCAAGTCATGGAGCTGCCTTCAATGGTGGAGCGT
TCGGGTGATCGCTTGGTGGTGCGCAGCTTGGTTAGTGGTGCTCCACTTTA
TCAGTCATCTATTGAGGGCGGAGCAGGTGCTGTGCTTCCTATGTCCCAAA
GCGTGCAGCCGCTAATAGGTCAGGACTTTTTGGAGCAACAACTGGAGCAG
TATAAGGCGAATAACTTTATGTTTCCACTATCGATGGCCGGGTTTGTTTC
CGCAGACTCTGCACCACCGGGGGACTTGGCCAAGGAAAATATGGAGAACT
CACTGCCAGATGGTAATCCGTGCAACAACAACAACGACGATGAGCTGCCG
CAGTGCAAGATACGGCGTAACTACAGCTGCAACCAGTGCGCATTCTTCAC
GCAAAATCCGCGCAGTCATCTCTCGCATCTGCGGGACGTACATGGCGAGC
GGATTGTGATCAACGAGTGCAAGTTGTGCCTCTATGCCTCACGCCACTTC
CAGAAGCTGGTGCGGCACATGAAAATGGTGCACGGCTGTTCCGATGATGG
CGGCGCAGTGCAGGGATCAGGTGCTCAGCCGCGTGGTAAGCGAAATCTCT
CCAGGGAGGTGCGCAAGCGTCGTCTGGAGGAGAGCATTGAAGGCCAGGGT
GCGACTGGGCAATGCCTAGACCTCAGCGTGCTGCGCATGATCCAAAATGG
ACCGCCACTGGAGCAGCTGAAAGTAGAACTGCAGCAGCAAGAGATGCAGC
TACTGGCCAGTGTCCAGGCGTACAATCGACAGCAGGAGATGCTGCAGCTG
CAGCAGATCGTCGAGAGCCACGACAACATATTCTCCATGGCCTACGAGTT
CCAGACCAAGTTAATGCCGCCTAAGCAAGCAGAGTCCCTGAAATTGGAAC
AGCAAAACAGCAGCTCCGATTCCGAGGAGACTGCGAAGAGTCCTTCGCCG
GATACCCGTGAATTGGTGTCGGGTAAGGAGCAGTTTCAATGCCAGAAGTG
TTCATATAGCACGCCCATTCGAGCCAGATTCAAAAAGCATGTGAAGTACC
ATTCCATGCCACTGATCAAGTGCAGCTCATGTGATTTTCACACACCCTAC
AAGTGGAATCTAGACCGGCACACCAAGAACCATGGTGCCAATGGCCATTT
CAAGTGCTCGTGCTGTGACTTTAGCACGGATATCAAACAATCGCTGACCA
TACACGAATCAAACCATCATGTGCCCATGCCGGTTCACCAAATGGGCAAC
CGAAGCCGAGATGAGGCTGAGGATCTGGTGGATCAGCAGTCAAGTGGTTC
CAGGAAACCAGAAACGTTTAAAAATGGTGGTGCTACCGTTGCATCGACAG
AATCTCTGCTTCCCCGGACTTCGGGGATCGTTTGTTCACACTGCCAGAAG
CGGGTGGGCAATGCCATGCAGTTGATCAACCATCTACAAGTGTGCACTTT
GGCCTTGCACAACACCACCCAACTGCAGGCTTCTATCAACGCGGAGGTGG
ATCTTCACGATGAGGACTTCCCCAATGCTCCCACTGATCTCAGTTATTGC
GGCGTAGAAACAGCTCCTGGCTATGGGGAGGTCACAGAAGTTTTGCCAGA
GGAACCCGAAGATTTGGCGCCATTGAAGAAGGTTTTTAAGTGTCCTCATT
GCAGTTTTTGGGCAGCCACTGCATCTCGCTTCCATGTCCACATCGTTGGT
CATCTAAATAGGAAGCCCTTTGAATGCTCTCTGTGCGCCTATCGCTCCAA
CTGGCGCTGGGACATCACCAAGCACATCCGTTTGAAGGCCCTCCGCGATA
GATCCCATAACCAGGCCCAGGTGCTGATGAACGATGAGACCGGTAGGCGC
AACTACGCCAAGTACAATCAGTATCTGACTATGATGAAGGTAAGCGCCGA
ACAATTGGCCGATTCGAAGGGAATGCGCACGGGTGAAATGATTGTGATGC
CGCCGGAGAAGCTAGACGACCATCATCCCATGGAAACGGAGGAGATCATC
GAGATGGTGGATAGTGCTCATTCGACCTCGGCACTGGATTTACGAAAGCC
CAGGGATGACCAGACGGAGGACTTGGCAGGCAACAGCGATGAGCTGCCGC
AAGAGGGAGCCAAGACGGAGCCAAATTTAGAACCCTTGTCATTTAAATCA
TTGAATTCATCACAAGTCATGCCAAAGCCCAAAGGGTCGCCTATGAATTT
GACCAAGACAGATGGTGGTCAATCAGACGAAACGACATCCGCTGATGAAT
CCAATGAAAGCGATTAAAACGGATCTTTCGAATCTTTGAATACTCAATTC
TCAGCAACAATATTAAAAAAAAAAAAAAAAAA

LP08967.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5204-RA 2364 CG5204-RA 1..2364 1..2364 11820 100 Plus
CG5204.a 2277 CG5204.a 217..2277 304..2364 10305 100 Plus
CG5204.a 2277 CG5204.a 1..218 1..218 1090 100 Plus
CG9932.b 7368 CG9932.b 2590..2859 1674..1943 585 81.1 Plus
CG9932.b 7368 CG9932.b 486..679 395..588 445 81.9 Plus
CG9932.b 7368 CG9932.b 1221..1321 1085..1185 205 80.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13159489..13161061 60..1632 7865 100 Plus
chr2L 23010047 chr2L 13161115..13161850 1629..2364 3680 100 Plus
chr2L 23010047 chr2L 13026924..13027193 1943..1674 570 80.7 Minus
chr2L 23010047 chr2L 13029506..13029699 588..395 445 82 Minus
chr2L 23010047 chr2L 13159224..13159283 1..60 300 100 Plus
chr2L 23010047 chr2L 13028774..13028964 1275..1085 235 74.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13160792..13162364 60..1632 7865 100 Plus
2L 23513712 2L 13162418..13163169 1629..2380 3715 99.6 Plus
2L 23513712 2L 13028236..13028505 1943..1674 585 81.1 Minus
2L 23513712 2L 13030816..13031009 588..395 445 82 Minus
2L 23513712 2L 13160527..13160586 1..60 300 100 Plus
2L 23513712 2L 13030084..13030274 1275..1085 235 74.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13160792..13162364 60..1632 7865 100 Plus
2L 23513712 2L 13162418..13163169 1629..2380 3715 99.6 Plus
2L 23513712 2L 13028236..13028505 1943..1674 585 81.1 Minus
2L 23513712 2L 13030816..13031009 588..395 445 81.9 Minus
2L 23513712 2L 13160527..13160586 1..60 300 100 Plus
2L 23513712 2L 13030174..13030274 1185..1085 205 80.1 Minus
Blast to na_te.dros performed on 2019-03-16 12:19:52 has no hits.

LP08967.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:20:53 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13159490..13161059 61..1630 100 -> Plus
chr2L 13161117..13161844 1631..2358 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:39:36 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 1..2244 74..2317 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:41:53 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 1..2244 74..2317 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:16:32 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 1..2244 74..2317 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:33:58 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 1..2244 74..2317 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:34 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 1..2244 74..2317 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:16:03 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 1..2364 1..2364 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:41:53 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 1..2364 1..2364 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:16:32 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 1..2364 1..2364 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:33:58 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 1..2364 1..2364 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:34 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 1..2364 1..2364 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:20:53 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13160527..13160586 1..60 100 -> Plus
2L 13160793..13162362 61..1630 100 -> Plus
2L 13162420..13163153 1631..2364 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:20:53 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13160527..13160586 1..60 100 -> Plus
2L 13160793..13162362 61..1630 100 -> Plus
2L 13162420..13163153 1631..2364 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:20:53 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13160527..13160586 1..60 100 -> Plus
2L 13160793..13162362 61..1630 100 -> Plus
2L 13162420..13163153 1631..2364 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:16:32 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13160527..13160586 1..60 100 -> Plus
arm_2L 13160793..13162362 61..1630 100 -> Plus
arm_2L 13162420..13163153 1631..2364 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:06:19 Download gff for LP08967.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13160793..13162362 61..1630 100 -> Plus
2L 13162420..13163153 1631..2364 100   Plus
2L 13160527..13160586 1..60 100 -> Plus

LP08967.pep Sequence

Translation from 73 to 2316

> LP08967.pep
MELPSMVERSGDRLVVRSLVSGAPLYQSSIEGGAGAVLPMSQSVQPLIGQ
DFLEQQLEQYKANNFMFPLSMAGFVSADSAPPGDLAKENMENSLPDGNPC
NNNNDDELPQCKIRRNYSCNQCAFFTQNPRSHLSHLRDVHGERIVINECK
LCLYASRHFQKLVRHMKMVHGCSDDGGAVQGSGAQPRGKRNLSREVRKRR
LEESIEGQGATGQCLDLSVLRMIQNGPPLEQLKVELQQQEMQLLASVQAY
NRQQEMLQLQQIVESHDNIFSMAYEFQTKLMPPKQAESLKLEQQNSSSDS
EETAKSPSPDTRELVSGKEQFQCQKCSYSTPIRARFKKHVKYHSMPLIKC
SSCDFHTPYKWNLDRHTKNHGANGHFKCSCCDFSTDIKQSLTIHESNHHV
PMPVHQMGNRSRDEAEDLVDQQSSGSRKPETFKNGGATVASTESLLPRTS
GIVCSHCQKRVGNAMQLINHLQVCTLALHNTTQLQASINAEVDLHDEDFP
NAPTDLSYCGVETAPGYGEVTEVLPEEPEDLAPLKKVFKCPHCSFWAATA
SRFHVHIVGHLNRKPFECSLCAYRSNWRWDITKHIRLKALRDRSHNQAQV
LMNDETGRRNYAKYNQYLTMMKVSAEQLADSKGMRTGEMIVMPPEKLDDH
HPMETEEIIEMVDSAHSTSALDLRKPRDDQTEDLAGNSDELPQEGAKTEP
NLEPLSFKSLNSSQVMPKPKGSPMNLTKTDGGQSDETTSADESNESD*

LP08967.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14220-PA 752 GF14220-PA 1..703 1..699 2279 64.2 Plus
Dana\GF15648-PA 2187 GF15648-PA 1..427 1..409 867 45.4 Plus
Dana\GF15648-PA 2187 GF15648-PA 786..918 507..639 568 74.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23815-PA 741 GG23815-PA 1..741 1..747 3191 82.1 Plus
Dere\GG10230-PA 2182 GG10230-PA 1..426 1..409 882 46.4 Plus
Dere\GG10230-PA 2182 GG10230-PA 784..916 507..639 568 74.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11390-PA 658 GH11390-PA 1..610 1..676 1662 54.6 Plus
Dgri\GH10347-PA 2228 GH10347-PA 136..463 105..409 847 51.9 Plus
Dgri\GH10347-PA 2228 GH10347-PA 808..940 507..639 566 74.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
kmg-PA 747 CG5204-PA 1..747 1..747 3961 100 Plus
CG9932-PC 1899 CG9932-PC 1..424 1..409 907 47 Plus
CG9932-PD 1988 CG9932-PD 1..424 1..409 907 47 Plus
CG9932-PE 2167 CG9932-PE 1..424 1..409 907 47 Plus
CG9932-PA 2171 CG9932-PA 1..424 1..409 907 47 Plus
CG9932-PC 1899 CG9932-PC 675..914 449..639 553 48.1 Plus
CG9932-PA 2171 CG9932-PA 675..914 449..639 553 48.1 Plus
CG9932-PD 1988 CG9932-PD 675..910 449..639 547 47.9 Plus
CG9932-PE 2167 CG9932-PE 675..910 449..639 547 47.9 Plus
CG5245-PA 501 CG5245-PA 221..450 321..572 166 24 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18095-PA 770 GI18095-PA 1..690 1..639 1787 56.3 Plus
Dmoj\GI21204-PA 2201 GI21204-PA 129..455 105..409 817 54 Plus
Dmoj\GI21204-PA 2201 GI21204-PA 801..933 507..639 567 74.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24741-PA 675 GL24741-PA 1..605 1..638 1887 58.5 Plus
Dper\GL24778-PA 2255 GL24778-PA 1..428 1..409 867 46 Plus
Dper\GL24778-PA 2255 GL24778-PA 787..919 507..639 567 74.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18735-PA 675 GA18735-PA 1..605 1..638 1884 58.5 Plus
Dpse\GA22134-PA 2200 GA22134-PA 1..428 1..409 865 45.4 Plus
Dpse\GA22134-PA 2200 GA22134-PA 787..919 507..639 566 74.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10157-PA 701 GM10157-PA 1..692 1..719 3387 90.6 Plus
Dsec\GM25899-PA 1404 GM25899-PA 1..426 1..409 886 46.6 Plus
Dsec\GM25899-PA 1404 GM25899-PA 784..916 507..639 568 74.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23866-PA 740 GD23866-PA 1..740 1..747 3685 92.2 Plus
Dsim\GD22089-PA 593 GD22089-PA 1..426 1..409 878 46.6 Plus
Dsim\GD22090-PA 835 GD22090-PA 184..316 507..639 569 74.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16856-PA 758 GJ16856-PA 1..703 1..681 1874 57.9 Plus
Dvir\GJ11036-PA 2232 GJ11036-PA 123..449 105..409 832 54.6 Plus
Dvir\GJ11036-PA 2232 GJ11036-PA 794..926 507..639 568 74.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15313-PA 708 GK15313-PA 1..703 1..743 1907 54.9 Plus
Dwil\GK14812-PA 2213 GK14812-PA 122..447 105..409 816 51.8 Plus
Dwil\GK14812-PA 2213 GK14812-PA 804..936 507..639 568 74.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18617-PA 747 GE18617-PA 1..747 1..747 3420 85.2 Plus
Dyak\GE11950-PA 2383 GE11950-PA 213..639 1..409 843 44.9 Plus
Dyak\GE11950-PA 2383 GE11950-PA 887..1129 446..639 570 47.1 Plus
Dyak\GE11950-PA 2383 GE11950-PA 1..218 1..220 490 49.1 Plus

LP08967.hyp Sequence

Translation from 73 to 2316

> LP08967.hyp
MELPSMVERSGDRLVVRSLVSGAPLYQSSIEGGAGAVLPMSQSVQPLIGQ
DFLEQQLEQYKANNFMFPLSMAGFVSADSAPPGDLAKENMENSLPDGNPC
NNNNDDELPQCKIRRNYSCNQCAFFTQNPRSHLSHLRDVHGERIVINECK
LCLYASRHFQKLVRHMKMVHGCSDDGGAVQGSGAQPRGKRNLSREVRKRR
LEESIEGQGATGQCLDLSVLRMIQNGPPLEQLKVELQQQEMQLLASVQAY
NRQQEMLQLQQIVESHDNIFSMAYEFQTKLMPPKQAESLKLEQQNSSSDS
EETAKSPSPDTRELVSGKEQFQCQKCSYSTPIRARFKKHVKYHSMPLIKC
SSCDFHTPYKWNLDRHTKNHGANGHFKCSCCDFSTDIKQSLTIHESNHHV
PMPVHQMGNRSRDEAEDLVDQQSSGSRKPETFKNGGATVASTESLLPRTS
GIVCSHCQKRVGNAMQLINHLQVCTLALHNTTQLQASINAEVDLHDEDFP
NAPTDLSYCGVETAPGYGEVTEVLPEEPEDLAPLKKVFKCPHCSFWAATA
SRFHVHIVGHLNRKPFECSLCAYRSNWRWDITKHIRLKALRDRSHNQAQV
LMNDETGRRNYAKYNQYLTMMKVSAEQLADSKGMRTGEMIVMPPEKLDDH
HPMETEEIIEMVDSAHSTSALDLRKPRDDQTEDLAGNSDELPQEGAKTEP
NLEPLSFKSLNSSQVMPKPKGSPMNLTKTDGGQSDETTSADESNESD*

LP08967.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5204-PA 747 CG5204-PA 1..747 1..747 3961 100 Plus
CG9932-PC 1899 CG9932-PC 1..424 1..409 907 47 Plus
CG9932-PD 1988 CG9932-PD 1..424 1..409 907 47 Plus
CG9932-PE 2167 CG9932-PE 1..424 1..409 907 47 Plus
CG9932-PA 2171 CG9932-PA 1..424 1..409 907 47 Plus
CG9932-PC 1899 CG9932-PC 675..914 449..639 553 48.1 Plus
CG9932-PD 1988 CG9932-PD 675..910 449..639 547 47.9 Plus
CG9932-PE 2167 CG9932-PE 675..910 449..639 547 47.9 Plus