Clone LP09118 Report

Search the DGRC for LP09118

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:91
Well:18
Vector:pOT2
Associated Gene/Transcriptcactin-RB
Protein status:LP09118.pep: gold
Sequenced Size:2360

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
cactin 2011-08-09 Manual selection by Sue Celniker

Clone Sequence Records

LP09118.complete Sequence

2360 bp assembled on 2011-10-17

GenBank Submission: BT132738.1

> LP09118.complete
TTGGTTTTCTCCATCTGGCAACGCTAGCATTGTTTATATTTTATTTCACA
AGTTTTATCCCGAAAAACTCATTAAAAAAGATGCCCAAGGAGAAATCCAA
GCACCGGCATCGCAGCCGCAGTCGGGAGAGGCGGGATCATCGCAGTCCGG
ATCCGAGGAGCAGCAGGAACAGGGATCGGGATCGTGAACGCGAGCGGGAA
AAGGATCGTGACCACAGAGATCACAGAGACAAGGAACGTGACCAGCGCAG
GGAAAGGGAAAAGGACAAAAGCAGGGACAAGAAGCGGGAGCACAAAAGCC
GGAGACGCCGGTCCTCTTCCTCCAGCTCATCCCCGTCGAGTTCGACGTCC
AGCTCGGTGCCCGGTGCCCCTCGTTCGCCGCTGGTAAAAAGCCCGATGAA
GCTTCTCCAGACGCTGGAAGCCCGTCGCCTCGTCGAGCAGAAGGATCGTC
AGCGTAAAAAGGAGGAGCTGAAGGCCCATGAAACGCCCGAGGAGAAGCGC
GCCCGTCGCCTGCGCGAAAAGCAGGCCAAGGAGCAGCGGCGTCGCGAACG
AATGGGCTGGGACAACGAGTACCAGACGTACTCCAACGAAGACAACCCGT
TCGGGGACTCCAATCTCACCTCCACCTTCCACTGGGGCAAAAAGCTGGAG
GTAGAGGGACTATCAAATCTCTCCACCAAAACCGTAGAGGTACTGTCTCT
GCAAAAGCAGTTGGAAAATCGCAGGGAGCTGGAGAAGGTCAAGAAACGGC
GTCAGGAGAGGGAGCTGGAGCGGCAGGTGCGCGAGGATGATCTTATGATG
CAGCAGCGCGCCAAGGAGGCGGTGCAGTTCCGCGAGTGGCAGCGACAGGA
AGATCAGTTTCACTTAGAGCAGGCACGCTTGCGCAGTGAAATCCGGATCC
GAGATGGACGTGCCAAGCCCATCGATCTTCTCGCCCAATATGTGGCCGCT
GGGAATGAGCCGCTCGAAGAGTGCCTCGAGATGCAGATGCACGAGCCCTA
TGTGCTGCTAAACGGCCTGCCCGTGGAAGAACTGGAGGACCTGCTGGTCG
ACATTAAGGTATACGAAGAGCTGGAGCAGGGCAAGCACATCGATTTCTGG
AACGATATGATCACCATTGTGCAGGATGAACTGCAGCGCCAACAGAAACT
GGAGGCGGAGAATAGTTCGCTCAATCAACGCCGGGATGGCATCCACCAGG
CGGTGGTAAAGGATGTGGCCGATATTTTTAGGGGGAAGAATGCTCAGCAG
CTGGAGGAGATGCGGCACCGCATCGAGGCCAAGATCAGTGGGCGAGCGGA
TGGCGTCGACATTAGCTACTGGGAAAGCCTGCTCTCGCAACTCAAGGCAC
ACATGGCCAGAGCTCGACTGCGAGATCGCCATCAAGCCTTATTGCGCGAG
AAGCTGTCGCTGCTCAAGCGAGAAAACGATAATGAGACGTTGCAAGAGAA
GGTGGCCCCACAAGTCAAGGAAGAGGAGATGGAAACCCAGGACGCAGAGG
ACCCGGAGGTTGAGGAGGGCTCACCCGAAGACGAGGAGGATCCCCTGAAT
GAGCTGCGTAAAACAGTGCGTCTTTACCAGGCAGGGAACTACAGCCCGCG
CTATATACGCGAAGAGGACTTCACCGGCAGACGAGCGCAAAACGAAGACG
TCGACGAACCGGAGGCAGAAGGACTTCTCTACGAGGAGGAGGACGACGAG
CGGCGAACACAGAGACAGCGTCTGCTAATCCTTCATCCAGAACGAGTGGA
TAACAATCAACTGACCCCGCAGGAACTGCGAATGCGCAACGAGGCGAAGC
AGGGAATGCAGGGTGACGAGGCCGAGTTCAGTGTGGAGACCACCCTGGAT
GCAGTGCCGCAGCTGGCCACCGATAAGTACCGACCACGAAAGCCGCGCTA
CTTCAATCGCGTGCACACCGGCTTCGAGTGGAACAAGTACAACCAGACGC
ACTACGACATGGACAATCCCCCGCCCAAGATCGTGCAGGGATACAAGTTC
AACATATTCTATCCGGACCTTATGGACAAATCGCAGACGCCGCAGTACTT
CCTCACTCCCTGCGCGGACAACGGGGACTTTGCGGTGCTGCGTTTCCACA
CAGGACCACCGTACGAGGACATCGCCTTCAAGATCGTCAACCGGGAGTGG
GAGTTTAGCTACAAGCGGGGCTTCCGCTGCCAGTTCCACAACAACATCTT
CCAGCTGTGGTTCCACTTCAAGCGCTATCGCTACAGGCGGTGAAGGATTG
TCACCGTCTGGCCTAGATTACCCAAACCATCCTTTTGTGCAGTCCTATGT
TATTTTCCAATAAAGTGTAAGCCCAGAACAACTAAAAAAAAAAAAAAAAA
AAAAAAAAAA

LP09118.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20289584..20291916 1..2333 11665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20424074..20426407 1..2334 11670 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 20409166..20411499 1..2334 11670 100 Plus
Blast to na_te.dros performed on 2019-03-15 11:23:28 has no hits.

LP09118.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:24:24 Download gff for LP09118.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20289584..20291916 1..2333 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-10-17 11:02:43 Download gff for LP09118.complete
Subject Subject Range Query Range Percent Splice Strand
cactin-RA 47..2289 1..2243 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:42:56 Download gff for LP09118.complete
Subject Subject Range Query Range Percent Splice Strand
cactin-RB 1..2163 81..2243 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:32:00 Download gff for LP09118.complete
Subject Subject Range Query Range Percent Splice Strand
cactin-RB 1..2163 81..2243 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-17 11:02:43 Download gff for LP09118.complete
Subject Subject Range Query Range Percent Splice Strand
cactin-RA 95..2423 1..2329 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:42:56 Download gff for LP09118.complete
Subject Subject Range Query Range Percent Splice Strand
cactin-RB 6..2334 1..2329 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:00 Download gff for LP09118.complete
Subject Subject Range Query Range Percent Splice Strand
cactin-RB 6..2334 1..2329 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:24:24 Download gff for LP09118.complete
Subject Subject Range Query Range Percent Splice Strand
X 20424074..20426406 1..2333 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:24:24 Download gff for LP09118.complete
Subject Subject Range Query Range Percent Splice Strand
X 20424074..20426406 1..2333 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:24:24 Download gff for LP09118.complete
Subject Subject Range Query Range Percent Splice Strand
X 20424074..20426406 1..2333 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:42:56 Download gff for LP09118.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20295101..20297433 1..2333 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:37:00 Download gff for LP09118.complete
Subject Subject Range Query Range Percent Splice Strand
X 20409166..20411498 1..2333 100   Plus

LP09118.pep Sequence

Translation from 2 to 2242

> LP09118.pep
GFLHLATLALFIFYFTSFIPKNSLKKMPKEKSKHRHRSRSRERRDHRSPD
PRSSRNRDRDREREREKDRDHRDHRDKERDQRREREKDKSRDKKREHKSR
RRRSSSSSSSPSSSTSSSVPGAPRSPLVKSPMKLLQTLEARRLVEQKDRQ
RKKEELKAHETPEEKRARRLREKQAKEQRRRERMGWDNEYQTYSNEDNPF
GDSNLTSTFHWGKKLEVEGLSNLSTKTVEVLSLQKQLENRRELEKVKKRR
QERELERQVREDDLMMQQRAKEAVQFREWQRQEDQFHLEQARLRSEIRIR
DGRAKPIDLLAQYVAAGNEPLEECLEMQMHEPYVLLNGLPVEELEDLLVD
IKVYEELEQGKHIDFWNDMITIVQDELQRQQKLEAENSSLNQRRDGIHQA
VVKDVADIFRGKNAQQLEEMRHRIEAKISGRADGVDISYWESLLSQLKAH
MARARLRDRHQALLREKLSLLKRENDNETLQEKVAPQVKEEEMETQDAED
PEVEEGSPEDEEDPLNELRKTVRLYQAGNYSPRYIREEDFTGRRAQNEDV
DEPEAEGLLYEEEDDERRTQRQRLLILHPERVDNNQLTPQELRMRNEAKQ
GMQGDEAEFSVETTLDAVPQLATDKYRPRKPRYFNRVHTGFEWNKYNQTH
YDMDNPPPKIVQGYKFNIFYPDLMDKSQTPQYFLTPCADNGDFAVLRFHT
GPPYEDIAFKIVNREWEFSYKRGFRCQFHNNIFQLWFHFKRYRYRR*

LP09118.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19092-PA 722 GF19092-PA 44..722 77..746 2820 83.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19290-PA 718 GG19290-PA 1..718 27..746 3298 92.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17778-PA 769 GH17778-PA 129..769 132..746 2630 79.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
cactin-PB 720 CG1676-PB 1..720 27..746 3773 100 Plus
CG2839-PA 826 CG2839-PA 281..742 20..572 243 21.1 Plus
CG7971-PG 1062 CG7971-PG 385..632 20..283 204 25.7 Plus
CG7971-PA 1062 CG7971-PA 385..632 20..283 204 25.7 Plus
CG7971-PC 1107 CG7971-PC 385..632 20..283 204 25.7 Plus
CG7971-PF 1655 CG7971-PF 610..857 20..283 204 25.7 Plus
CG6227-PA 1224 CG6227-PA 72..241 21..199 194 27.8 Plus
CG31551-PA 1393 CG31551-PA 228..866 24..600 194 20.5 Plus
CG10600-PC 1376 CG10600-PC 199..340 21..162 192 34.2 Plus
CG10600-PA 1377 CG10600-PA 200..341 21..162 192 34.2 Plus
CG10600-PB 1406 CG10600-PB 229..370 21..162 192 34.2 Plus
CG31712-PA 290 CG31712-PA 10..240 28..293 190 27.6 Plus
CG7971-PG 1062 CG7971-PG 359..615 37..301 189 23.5 Plus
CG7971-PG 1062 CG7971-PG 488..651 29..180 189 26.8 Plus
CG7971-PA 1062 CG7971-PA 359..615 37..301 189 23.5 Plus
CG7971-PA 1062 CG7971-PA 488..651 29..180 189 26.8 Plus
CG7971-PC 1107 CG7971-PC 359..615 37..301 189 23.5 Plus
CG7971-PC 1107 CG7971-PC 488..651 29..180 189 26.8 Plus
CG7971-PF 1655 CG7971-PF 584..840 37..301 189 23.5 Plus
CG7971-PF 1655 CG7971-PF 713..876 29..180 189 26.8 Plus
rgn-PD 800 CG6014-PD 228..747 28..627 189 20.6 Plus
rgn-PA 800 CG6014-PA 228..747 28..627 189 20.6 Plus
rgn-PC 808 CG6014-PC 236..755 28..627 189 20.6 Plus
rgn-PB 808 CG6014-PB 236..755 28..627 189 20.6 Plus
CG7971-PG 1062 CG7971-PG 242..504 25..300 184 23.4 Plus
CG7971-PA 1062 CG7971-PA 242..504 25..300 184 23.4 Plus
CG7971-PC 1107 CG7971-PC 242..504 25..300 184 23.4 Plus
CG7971-PF 1655 CG7971-PF 467..729 25..300 184 23.4 Plus
CG2839-PA 826 CG2839-PA 587..794 29..249 181 24.9 Plus
CG6340-PB 513 CG6340-PB 105..257 29..183 178 30.3 Plus
CG4119-PB 998 CG4119-PB 350..546 21..244 177 24.7 Plus
CG4119-PA 998 CG4119-PA 350..546 21..244 177 24.7 Plus
CG31712-PB 284 CG31712-PB 10..218 28..263 174 28.4 Plus
ncm-PA 1330 CG12750-PA 979..1255 20..304 173 21.2 Plus
Fip1-PA 701 CG1078-PA 575..695 14..133 168 29.8 Plus
CG8273-PB 874 CG8273-PB 131..362 25..271 166 23.4 Plus
CG8273-PA 874 CG8273-PA 131..362 25..271 166 23.4 Plus
SF1-PC 323 CG5836-PC 37..132 21..112 165 40.6 Plus
SF1-PB 347 CG5836-PB 37..132 21..112 165 40.6 Plus
CG12239-PA 650 CG12239-PA 54..574 30..587 165 21 Plus
SF1-PA 787 CG5836-PA 37..132 21..112 165 40.6 Plus
CG12075-PD 994 CG12075-PD 398..568 20..197 165 26.9 Plus
CG12075-PE 1006 CG12075-PE 410..580 20..197 165 26.9 Plus
CG12075-PC 1006 CG12075-PC 410..580 20..197 165 26.9 Plus
CG12075-PB 1006 CG12075-PB 410..580 20..197 165 26.9 Plus
CG12075-PA 1006 CG12075-PA 410..580 20..197 165 26.9 Plus
CG6227-PA 1224 CG6227-PA 9..233 55..284 164 25.9 Plus
CG10333-PA 822 CG10333-PA 6..172 35..181 164 29 Plus
Caper-PB 594 CG11266-PB 64..206 29..169 163 28.9 Plus
Caper-PA 594 CG11266-PA 64..206 29..169 163 28.9 Plus
CG6686-PA 970 CG6686-PA 5..252 22..273 163 25.6 Plus
CG12877-PC 991 CG12877-PC 175..263 29..118 163 38.9 Plus
CG11808-PA 219 CG11808-PA 4..79 44..118 162 51.9 Plus
BOD1-PC 1109 CG5514-PC 582..738 23..182 162 26.2 Plus
BOD1-PA 1109 CG5514-PA 582..738 23..182 162 26.2 Plus
BOD1-PD 1150 CG5514-PD 582..738 23..182 162 26.2 Plus
BOD1-PB 1150 CG5514-PB 582..738 23..182 162 26.2 Plus
BOD1-PE 1151 CG5514-PE 582..738 23..182 162 26.2 Plus
CG6340-PB 513 CG6340-PB 126..275 25..171 159 28.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15124-PA 766 GI15124-PA 125..766 115..746 2658 79.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15935-PA 232 GL15935-PA 10..232 529..746 1054 86.2 Plus
Dper\GL15934-PA 218 GL15934-PA 20..206 49..241 581 65.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25716-PA 743 GA25716-PA 20..743 49..746 2737 75.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23033-PA 378 GM23033-PA 1..378 369..746 2035 99.2 Plus
Dsec\GM23032-PA 306 GM23032-PA 1..306 27..335 1121 90 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18982-PA 762 GJ18982-PA 20..762 31..746 2683 73.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25491-PA 777 GK25491-PA 114..777 121..746 2664 77.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17882-PA 630 GE17882-PA 187..630 303..746 2225 93.9 Plus
Dyak\GE17882-PA 630 GE17882-PA 1..189 27..216 586 91.6 Plus

LP09118.hyp Sequence

Translation from 2 to 2242

> LP09118.hyp
GFLHLATLALFIFYFTSFIPKNSLKKMPKEKSKHRHRSRSRERRDHRSPD
PRSSRNRDRDREREREKDRDHRDHRDKERDQRREREKDKSRDKKREHKSR
RRRSSSSSSSPSSSTSSSVPGAPRSPLVKSPMKLLQTLEARRLVEQKDRQ
RKKEELKAHETPEEKRARRLREKQAKEQRRRERMGWDNEYQTYSNEDNPF
GDSNLTSTFHWGKKLEVEGLSNLSTKTVEVLSLQKQLENRRELEKVKKRR
QERELERQVREDDLMMQQRAKEAVQFREWQRQEDQFHLEQARLRSEIRIR
DGRAKPIDLLAQYVAAGNEPLEECLEMQMHEPYVLLNGLPVEELEDLLVD
IKVYEELEQGKHIDFWNDMITIVQDELQRQQKLEAENSSLNQRRDGIHQA
VVKDVADIFRGKNAQQLEEMRHRIEAKISGRADGVDISYWESLLSQLKAH
MARARLRDRHQALLREKLSLLKRENDNETLQEKVAPQVKEEEMETQDAED
PEVEEGSPEDEEDPLNELRKTVRLYQAGNYSPRYIREEDFTGRRAQNEDV
DEPEAEGLLYEEEDDERRTQRQRLLILHPERVDNNQLTPQELRMRNEAKQ
GMQGDEAEFSVETTLDAVPQLATDKYRPRKPRYFNRVHTGFEWNKYNQTH
YDMDNPPPKIVQGYKFNIFYPDLMDKSQTPQYFLTPCADNGDFAVLRFHT
GPPYEDIAFKIVNREWEFSYKRGFRCQFHNNIFQLWFHFKRYRYRR*

LP09118.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
cactin-PB 720 CG1676-PB 1..720 27..746 3773 100 Plus
CG2839-PA 826 CG2839-PA 281..742 20..572 243 21.1 Plus
CG7971-PG 1062 CG7971-PG 385..632 20..283 204 25.7 Plus
CG7971-PA 1062 CG7971-PA 385..632 20..283 204 25.7 Plus
CG7971-PC 1107 CG7971-PC 385..632 20..283 204 25.7 Plus
CG7971-PG 1062 CG7971-PG 359..615 37..301 189 23.5 Plus
CG7971-PG 1062 CG7971-PG 488..651 29..180 189 26.8 Plus
CG7971-PA 1062 CG7971-PA 359..615 37..301 189 23.5 Plus
CG7971-PA 1062 CG7971-PA 488..651 29..180 189 26.8 Plus
CG7971-PG 1062 CG7971-PG 242..504 25..300 184 23.4 Plus
CG7971-PA 1062 CG7971-PA 242..504 25..300 184 23.4 Plus
CG2839-PA 826 CG2839-PA 587..794 29..249 181 24.9 Plus