Clone LP09162 Report

Search the DGRC for LP09162

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:91
Well:62
Vector:pOT2
Associated Gene/TranscriptTango13-RB
Protein status:LP09162.pep: gold
Preliminary Size:1234
Sequenced Size:1793

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1573 2002-01-01 Sim4 clustering to Release 2
CG32632 2002-05-18 Blastp of sequenced clone
CG32632 2003-01-01 Sim4 clustering to Release 3
CG32627 2008-04-29 Release 5.5 accounting
Tango13 2008-08-15 Release 5.9 accounting
Tango13 2008-12-18 5.12 accounting

Clone Sequence Records

LP09162.complete Sequence

1793 bp (1793 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119073

> LP09162.complete
AGTAGACCACATCATCGTCATTCGCCGTCATCCGAATCAAAGGCCAGTTA
TCTGCGACACCTAGACCATCGCCAGAATGCGACTGCCATATCGAAATAAG
AAGGTCACCCTGTGGGTGCTCTTCGGCATCATCGTCATCACCATGTTCCT
ATTCAAATTCACCGAACTGCGGCCCACATGCCTCTTCAAGGTGGACGCCG
CCAACGAGCTCTCCTCCCAAATGGTTCGCGTTGAGAAATACCTCACAGAT
GACAATCAACGCGTTTATTCATACAACCGTGAGATGCCATTAATATTCAT
AGGCGGCGTGCCGAGATCTGGGACGACTTTGATGCGCGCCATGCTGGATG
CCCATCCCGATGTGCGCTGCGGGCAGGAAACCCGTGTCATTCCGCGCATC
CTGCAGCTGCGCTCGCACTGGCTGAAGTCCGAGAAGGAGTCGCTCCGCCT
GCAGGAGGCCGGCATCACCAAAGAGGTCATGAACAGTGCCATCGCGCAGT
TCTGTCTGGAAATCATCGCCAAACACGGCGAGCCGGCGCCGCGCTTATGC
AACAAGGATCCGCTGACGCTGAAAATGGGCTCCTATGTCATCGAGCTATT
TCCGAACGCTAAATTCCTATTCATGGTGCGCGACGGCCGGGCGACAGTTC
ATTCGATTATATCGCGCAAGGTGACAATCACCGGCTTCGATTTGAGCAGC
TACCGGCAGTGCATGCAGAAGTGGAACCACGCCATCGAGGTGATGCACGA
GCAGTGCCGGGACATCGGCAAGGACCGCTGCATGATGGTTTACTATGAGC
AGCTGGTACTGCATCCCGAGGAGTGGATGCGAAAGATACTGAAATTCCTG
GACGTGCCATGGAACGATGCGGTGCTGCACCACGAGGAGTTCATAAATAA
ACCGAACGGTGTGCCTCTGTCCAAGGTGGAACGTTCGTCGGACCAGGTTA
TCAAGCCGGTTAATCTGGAGGCGATGTCCAAATGGGTTGGCCAAATACCC
GGCGACGTGGTGCGCGACATGGCCGACATAGCGCCCATGCTGTCCGTGCT
CGGCTACGATCCGTACGCGAATCCGCCGGACTATGGTAAGCCAGATGCAT
GGGTGCAGGACAACACGTCGAAGTTAAAGGCCAATCGAATGCTGTGGGAG
AGTAAGGCGAAGCAAGTGCTGCAGATGTCATCCAGCGAGGATGACAACAC
GAACACCATCATCAACAATAGCAACAATAAGGATAACAACAATAATCAGT
ACACAATCAATAAAATTATACCAGAACAACACAGCAGACAGCGGCAACAT
GTACAGCAGCAACATCTGCAGCAGCAGCAGCAGCAGCATCTGCAACAGCA
GCAACATCAGCGGCAGCAGCAACAGCAGCAACGTGAGGAGGAGAGCGAGT
CGGAAAGGGAAGCGGAACCGGATCGAGAACAACAATTGTTGCATCAAAAG
CCAAAGGATGTCATTACGATAAAGCAGCTGCCATTAGCTGGGAGCAACAA
TAACAACATCAACAATAACATCAACAACAACAACAACAACAACAACATCA
TGGAGGACCCCATGGCGGATACATGATATCCGCACATACCCATAAGACTG
CCGCGTGGCAAGCATTGAATCTGGCTAACTCTCTTGGCTGCCGATAAGGA
CAACGATAATGATAACTGTTGCTGCTGCTGCTGTTGCAAGAAACCAATTT
TAAATTGTATTAGCCGAGACCTTTACATGCTTGATACATATATGTACGTG
TATTAATGCTTCGTGAAGTTACAAAAAAAAAAAAAAAAAAAAA

LP09162.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
Tango13.c 4747 Tango13.c 963..2755 1..1793 8950 99.9 Plus
Tango13-RB 2755 Tango13-RB 963..2755 1..1793 8950 99.9 Plus
Tango13.d 5451 Tango13.d 1634..2722 1..1089 5430 99.9 Plus
Tango13.d 5451 Tango13.d 2718..3388 1123..1793 3340 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13480656..13481306 1122..1772 3255 100 Plus
chrX 22417052 chrX 13474892..13475134 366..608 1215 100 Plus
chrX 22417052 chrX 13468166..13468400 1..235 1175 100 Plus
chrX 22417052 chrX 13476630..13476832 925..1127 1000 99.5 Plus
chrX 22417052 chrX 13475597..13475778 608..789 910 100 Plus
chrX 22417052 chrX 13476426..13476564 787..925 695 100 Plus
chrX 22417052 chrX 13470784..13470921 229..366 675 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13589920..13590591 1122..1793 3345 99.9 Plus
X 23542271 X 13584156..13584398 366..608 1215 100 Plus
X 23542271 X 13577430..13577664 1..235 1175 100 Plus
X 23542271 X 13585894..13586096 925..1127 1000 99.5 Plus
X 23542271 X 13584861..13585042 608..789 910 100 Plus
X 23542271 X 13585690..13585828 787..925 695 100 Plus
X 23542271 X 13580048..13580185 229..366 675 99.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13598018..13598689 1122..1793 3345 99.8 Plus
X 23527363 X 13592254..13592496 366..608 1215 100 Plus
X 23527363 X 13585528..13585762 1..235 1175 100 Plus
X 23527363 X 13593992..13594194 925..1127 1000 99.5 Plus
X 23527363 X 13592959..13593140 608..789 910 100 Plus
X 23527363 X 13593788..13593926 787..925 695 100 Plus
X 23527363 X 13588146..13588283 229..366 675 99.2 Plus
Blast to na_te.dros performed on 2019-03-16 11:38:39 has no hits.

LP09162.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:39:23 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13468166..13468400 1..235 100 -> Plus
chrX 13470791..13470921 236..366 100 -> Plus
chrX 13474893..13475133 367..607 100 -> Plus
chrX 13475597..13475776 608..787 100 -> Plus
chrX 13476427..13476563 788..924 100 -> Plus
chrX 13476630..13476828 925..1123 100 -> Plus
chrX 13480658..13480727 1124..1193 100 == Plus
chrX 13480915..13481028 1381..1494 100 == Plus
chrX 13481082..13481306 1548..1772 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:46:32 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
Tango13-RB 1..1500 77..1576 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:41:56 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
Tango13-RB 1..1500 77..1576 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:08:22 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
Tango13-RF 1..1542 77..1618 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:34:00 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
Tango13-RB 1..1500 77..1576 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:10 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
Tango13-RF 1..1542 77..1618 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:32 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
Tango13-RB 963..2734 1..1772 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:41:55 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
Tango13-RB 963..2734 1..1772 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:08:22 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
Tango13-RB 963..2734 1..1772 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:34:02 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
Tango13-RB 963..2734 1..1772 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:10 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
Tango13-RB 963..2734 1..1772 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:23 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
X 13580055..13580185 236..366 100 -> Plus
X 13577430..13577664 1..235 100 -> Plus
X 13584157..13584397 367..607 100 -> Plus
X 13584861..13585040 608..787 100 -> Plus
X 13585691..13585827 788..924 100 -> Plus
X 13585894..13586092 925..1123 100 -> Plus
X 13589922..13590570 1124..1772 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:23 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
X 13580055..13580185 236..366 100 -> Plus
X 13577430..13577664 1..235 100 -> Plus
X 13584157..13584397 367..607 100 -> Plus
X 13584861..13585040 608..787 100 -> Plus
X 13585691..13585827 788..924 100 -> Plus
X 13585894..13586092 925..1123 100 -> Plus
X 13589922..13590570 1124..1772 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:23 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
X 13580055..13580185 236..366 100 -> Plus
X 13577430..13577664 1..235 100 -> Plus
X 13584157..13584397 367..607 100 -> Plus
X 13584861..13585040 608..787 100 -> Plus
X 13585691..13585827 788..924 100 -> Plus
X 13585894..13586092 925..1123 100 -> Plus
X 13589922..13590570 1124..1772 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:08:22 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13471463..13471697 1..235 100 -> Plus
arm_X 13474088..13474218 236..366 100 -> Plus
arm_X 13478190..13478430 367..607 100 -> Plus
arm_X 13478894..13479073 608..787 100 -> Plus
arm_X 13479724..13479860 788..924 100 -> Plus
arm_X 13479927..13480125 925..1123 100 -> Plus
arm_X 13483955..13484603 1124..1772 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:06:22 Download gff for LP09162.complete
Subject Subject Range Query Range Percent Splice Strand
X 13593992..13594190 925..1123 100 -> Plus
X 13592255..13592495 367..607 100 -> Plus
X 13592959..13593138 608..787 100 -> Plus
X 13585528..13585762 1..235 100 -> Plus
X 13588153..13588283 236..366 100 -> Plus
X 13593789..13593925 788..924 100 -> Plus
X 13598020..13598668 1124..1772 100   Plus

LP09162.pep Sequence

Translation from 76 to 1575

> LP09162.pep
MRLPYRNKKVTLWVLFGIIVITMFLFKFTELRPTCLFKVDAANELSSQMV
RVEKYLTDDNQRVYSYNREMPLIFIGGVPRSGTTLMRAMLDAHPDVRCGQ
ETRVIPRILQLRSHWLKSEKESLRLQEAGITKEVMNSAIAQFCLEIIAKH
GEPAPRLCNKDPLTLKMGSYVIELFPNAKFLFMVRDGRATVHSIISRKVT
ITGFDLSSYRQCMQKWNHAIEVMHEQCRDIGKDRCMMVYYEQLVLHPEEW
MRKILKFLDVPWNDAVLHHEEFINKPNGVPLSKVERSSDQVIKPVNLEAM
SKWVGQIPGDVVRDMADIAPMLSVLGYDPYANPPDYGKPDAWVQDNTSKL
KANRMLWESKAKQVLQMSSSEDDNTNTIINNSNNKDNNNNQYTINKIIPE
QHSRQRQHVQQQHLQQQQQQHLQQQQHQRQQQQQQREEESESEREAEPDR
EQQLLHQKPKDVITIKQLPLAGSNNNNINNNINNNNNNNNIMEDPMADT*

LP09162.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22576-PA 498 GF22576-PA 1..476 1..473 2087 88.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17794-PA 504 GG17794-PA 1..504 1..499 2201 92.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12501-PA 479 GH12501-PA 1..451 1..469 1982 80.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
Tango13-PE 499 CG32632-PE 1..499 1..499 2634 100 Plus
Tango13-PF 513 CG32632-PF 1..499 1..499 2634 100 Plus
Tango13-PB 499 CG32632-PB 1..499 1..499 2634 100 Plus
Tango13-PG 346 CG32632-PG 1..338 1..338 1777 99.7 Plus
Tango13-PD 346 CG32632-PD 1..338 1..338 1777 99.7 Plus
Tango13-PC 346 CG32632-PC 1..338 1..338 1777 99.7 Plus
Tet-PA 2860 CG43444-PA 43..154 383..495 179 37.8 Plus
Tet-PE 2866 CG43444-PE 43..154 383..495 179 37.8 Plus
Tet-PB 2915 CG43444-PB 43..154 383..495 179 37.8 Plus
Tet-PF 2921 CG43444-PF 43..154 383..495 179 37.8 Plus
Clk-PH 895 CG7391-PH 656..766 400..490 177 39.6 Plus
Clk-PG 895 CG7391-PG 656..766 400..490 177 39.6 Plus
Clk-PF 961 CG7391-PF 722..832 400..490 177 39.6 Plus
Clk-PA 1023 CG7391-PA 784..894 400..490 177 39.6 Plus
Clk-PD 1027 CG7391-PD 788..898 400..490 177 39.6 Plus
CG32767-PG 1280 CG32767-PG 411..497 400..490 169 39.6 Plus
CG32767-PH 1281 CG32767-PH 411..497 400..490 169 39.6 Plus
CG32767-PF 1281 CG32767-PF 411..497 400..490 169 39.6 Plus
CG32767-PE 1281 CG32767-PE 411..497 400..490 169 39.6 Plus
CG32767-PD 1281 CG32767-PD 411..497 400..490 169 39.6 Plus
CG32767-PC 1281 CG32767-PC 411..497 400..490 169 39.6 Plus
Smr-PF 3601 CG4013-PF 26..118 368..457 168 38.7 Plus
Smr-PE 3601 CG4013-PE 26..118 368..457 168 38.7 Plus
Smr-PD 3601 CG4013-PD 26..118 368..457 168 38.7 Plus
Smr-PG 3607 CG4013-PG 26..118 368..457 168 38.7 Plus
CG15365-PC 821 CG15365-PC 509..628 348..466 162 30 Plus
CG15365-PA 821 CG15365-PA 509..628 348..466 162 30 Plus
CG15365-PB 828 CG15365-PB 516..635 348..466 162 30 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14854-PA 459 GI14854-PA 1..371 1..371 1955 94.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20242-PA 515 GL20242-PA 1..488 1..475 1997 84.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26942-PA 521 GA26942-PA 1..489 1..475 1998 84.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17618-PA 478 GM17618-PA 1..478 1..499 2460 92.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17135-PA 501 GD17135-PA 1..501 1..499 2614 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19514-PA 494 GJ19514-PA 1..373 1..373 1903 92.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16105-PA 466 GK16105-PA 1..461 1..479 2000 81.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17090-PA 508 GE17090-PA 1..508 1..499 2572 95.5 Plus

LP09162.hyp Sequence

Translation from 76 to 1575

> LP09162.hyp
MRLPYRNKKVTLWVLFGIIVITMFLFKFTELRPTCLFKVDAANELSSQMV
RVEKYLTDDNQRVYSYNREMPLIFIGGVPRSGTTLMRAMLDAHPDVRCGQ
ETRVIPRILQLRSHWLKSEKESLRLQEAGITKEVMNSAIAQFCLEIIAKH
GEPAPRLCNKDPLTLKMGSYVIELFPNAKFLFMVRDGRATVHSIISRKVT
ITGFDLSSYRQCMQKWNHAIEVMHEQCRDIGKDRCMMVYYEQLVLHPEEW
MRKILKFLDVPWNDAVLHHEEFINKPNGVPLSKVERSSDQVIKPVNLEAM
SKWVGQIPGDVVRDMADIAPMLSVLGYDPYANPPDYGKPDAWVQDNTSKL
KANRMLWESKAKQVLQMSSSEDDNTNTIINNSNNKDNNNNQYTINKIIPE
QHSRQRQHVQQQHLQQQQQQHLQQQQHQRQQQQQQREEESESEREAEPDR
EQQLLHQKPKDVITIKQLPLAGSNNNNINNNINNNNNNNNIMEDPMADT*

LP09162.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Tango13-PE 499 CG32632-PE 1..499 1..499 2634 100 Plus
Tango13-PF 513 CG32632-PF 1..499 1..499 2634 100 Plus
Tango13-PB 499 CG32632-PB 1..499 1..499 2634 100 Plus
Tango13-PG 346 CG32632-PG 1..338 1..338 1777 99.7 Plus
Tango13-PD 346 CG32632-PD 1..338 1..338 1777 99.7 Plus