Clone LP09246 Report

Search the DGRC for LP09246

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:92
Well:46
Vector:pOT2
Associated Gene/TranscriptCG17715-RB
Protein status:LP09246.pep: gold
Sequenced Size:2787

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17715 2002-11-15 Blastp of sequenced clone
CG31178 2003-01-01 Sim4 clustering to Release 3
CG17715 2008-04-29 Release 5.5 accounting
CG31178 2008-04-29 Picked prior to 5.5
CG17715 2008-08-15 Release 5.9 accounting
CG17715 2008-12-18 5.12 accounting
CG31178 2008-12-18 5.12 accounting

Clone Sequence Records

LP09246.complete Sequence

2787 bp (2787 high quality bases) assembled on 2002-11-15

GenBank Submission: BT003227

> LP09246.complete
CAAAGTTCAAAATTTTCGTCGAATGAAATTCCAAATTTGTTTCGTCTTCA
GTTTCCGGCAGACAAAGTCCTCATTTGGACACCGCCGACATCCCATCATC
GCATCTGATTACAGCAATCCCATACACGCTACAGCAGACTGCCTAATCCC
CTAGAGAACTGGTACTCGATATCCACAAAACTGATGATCATCGAACTTTG
CCTGGAATTTCACTTGATGTGGGAATTAAATGTTCGCATCTATTTTATGC
GAATGAGAGTGGCCATTGTTAATCAACTGGAGCCAATTGGGGACTTCTCC
TACTAGAATTATTCATAATATCGAGCAAATTAACTATCCAGGATCAGGGT
TAACTAGACGTCCATTTGTTCAGGAGCAAACTGGCCAAAATGTCTGGATC
GAGGCGACGCCGTACCGTTATGGGATACTACGAATACATAATGCCCGGGA
TTTATGAGTATCCTTTGATCCAATGTGATGCGAGTGCAATCCGTTCCTAT
AGTATTGACTCCATAATGACCAGTGCTTCATCAACTTGGTCAATTCCAGA
TAGCAATGCCGCCTATGTAGCTGGACCAATGGGCGTTATCCACTATCAAT
CGGATATGCAAACGCACTTGGCTCTGCCAACTAGGCAAAATCTGGAAACT
GGTCTTATATATCCAACCATTGAATCCAACTCATGTTTCCATGAGCCAAA
TCTAGAATATGTTCAAATGGAGAATGAGCACACCGATGACGACGAGGGAT
ACGGCTATGAAATTCCCGAGATTGTTCTCTGCTTAAACCGTTCAAATTCA
GAGTCCGGCGCAGCTGAGGAATCTGGCGATTCGCAGCGTTCGTCAAAGAG
TTATTCATCGGTGGAGATTAGCGAGCAGTCAAGATCGGGGGAATACGTTA
AATTAGAATCGGTTTTCAGGAGGCGAAGAAAAGTATCGCAGAAGCGCAAA
TATACCACCGAGCAGGGTTACCTGGTTGAGGAACCCACCAGCGAACCATC
TGAGGAGGATGCCGAGGAACAGGCACCAAAATCCAGAAAATAGATATCTC
ATATTTCAGTTCAGCATCTACGTTTGACTATAGAAAAAAAACGTTACCCT
CTTTGATTTTTCGTTGGAATTTGTAGTGATCAAAATATATATATTTTATA
AATAAAAAAAAAAAAAAAAAACTCGAGTAACCACACAAATGGGAATGCAT
AATATATGTTTCAAAAAATCTCCCCTCAATTTATTAAACAAAACAAATAA
AAATTCTGCACTGATTGGCTGAACGGCTTACAGTGAAACAGACACGTTCG
AATCACACGAAAATTAATTTTCGATCAAGGCACAGACGCGGATATTAATC
AGCCTTCCGTGGCGTATTCTGCTCGGATTATTTGACGTGGGATTGCATTT
GCCTAAGAAAGCACTGTAAACCAAGAGATCGCTAATAATGCGAAATAAAT
TTCAATCCGCTATTAGGGGCGTAACGCGACAATACATTATAAGATCGTGG
CCCCGAGGCAGAGAGCTATTGAGGACGCAACTGATTATCCCGCCATCTTC
TACATCTAGCCCATTTACCTGTAGAAACTACTCAAAGTTTAGCACACATT
TGTCTATGGAGCGGGCGTTGGAGTTGCTATGCAACCTTGATGACGAGGAA
CGCGGCAACCTGCGCTCCGCTCTTGGCAGGCTAGATGCCGACAAGGAAAA
AAAATTATACGAGAGTCAACTGGCTTTCGGTAGTTGGCGCACTCGCTTCG
GACGACTTTCTAATAAGACGGAATTGGGCCAAGTTATTGCGGGAACTTTT
TGCGCAGTGCCCGATGATTGGCTGCGAAAAAAATTGGTTGAGACGGCAGC
ATCCCCCACGGCAGGTCAATTGTACAGCATTTTCTTTGTAAATGCAGTGC
CGTTTATCGCTTTCGGATTCCTTGACAATTTCATAATGATCATGGCGGGT
GAATACATTGAATATTATTTGGGCCACTTTATAACGCTGTCTACAATGGC
AGCCGCAGGACTAGGAAACACCATAAGCGATATTTTAGGCATCACTATGG
CCACCTACGTTGAGAATGGGTGCCAGATATTGGGTCTAAAGCAGCCCAAT
TTGACTCCAGCGCAATTTGAATTAAAGTCTAGCAAGCGGTCTTCAAGTTA
CGGACGGATTGTCGGGATCACTGTAGGCTGTTTGCTTGGAATGTGTCCTT
TATGGTTTATGGATGAAAAAGCAGATAAGGTGAATGTAAAAGATGAAATC
CCGAAAAATTAGAAAATGTTTTCCAGCTTGTCAAGAGAACGGATATCGGA
AATAATTTAACATTTTCTTTTCATGTTTTAAAGGGATAAATTTTTTGTAT
TATTTATGAATTTTTCGTTCAACAATTTGAATATGTATCAAATGTTTGTT
AGGCAACTTAAAAAACGTACCAAAAGTATCTGAGGTTAACATATGCTCAT
CGGCGGTAATTTTCTTCACAAATTTTTAATATTTTTTTTTATTACATAAT
AAATTTATAACAGATTACTCCAATTACCTGAGCATCAAAATGCATGTGCA
ATACTTTCTTAAGTTTTAACTCTATACAGTGCCGCTTAACTGAATAGGTT
TTAAAAATATTTTTATCGTGTGTCATGTAGTTCTTTTATCTGCCCGATAG
TTGATTTGAAAGCATCTCAGAAAGTTGTGGGACTGCCATGTTGTAAGTTT
TGGTATGTTTAATATTATTTTATTTTGTTATCTTCTTTTATTAAAGTTCA
CAGAATTAAAATTTTTCATAAAAAAAAAAAAAAAAAA

LP09246.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17715.s 3706 CG17715.s 320..1758 1335..2773 7195 100 Plus
CG17715.i 4217 CG17715.i 320..1758 1335..2773 7195 100 Plus
CG17715.r 4266 CG17715.r 871..1807 1837..2773 4685 100 Plus
CG17715.r 4266 CG17715.r 248..750 1335..1837 2515 100 Plus
CG17715.r 4266 CG17715.r 32..189 1178..1335 790 100 Plus
CG17715.s 3706 CG17715.s 104..261 1178..1335 790 100 Plus
CG17715.i 4217 CG17715.i 104..261 1178..1335 790 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17697484..17698638 1..1154 5695 99.7 Plus
chr2L 23010047 chr2L 22740914..22741535 2148..2769 3095 99.8 Plus
chr2L 23010047 chr2L 22735693..22736074 1335..1716 1910 100 Plus
chr2L 23010047 chr2L 22740653..22740858 1947..2152 1015 99.5 Plus
chr2L 23010047 chr2L 22735477..22735634 1178..1335 790 100 Plus
chr2L 23010047 chr2L 22740195..22740317 1715..1837 615 100 Plus
chr2L 23010047 chr2L 22740531..22740599 1880..1948 345 100 Plus
chr2RHet 3288813 chr2RHet 3165257..3165306 2711..2662 235 98 Minus
chr2L 23010047 chr2L 22740438..22740480 1837..1879 215 100 Plus
chr3LHet 2555433 chr3LHet 1065194..1065334 2628..2761 215 80.1 Plus
chr3LHet 2555433 chr3LHet 1098397..1098537 2628..2761 215 80.1 Plus
chr3L 24539361 chr3L 23436177..23436267 2622..2711 195 83.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21873769..21874923 1..1154 5725 99.9 Plus
2R 25286936 2R 802777..803402 2773..2148 3115 99.8 Minus
2L 23513712 2L 22849689..22850314 2148..2773 3115 99.8 Plus
2R 25286936 2R 808242..808623 1716..1335 1910 100 Minus
2L 23513712 2L 22844468..22844849 1335..1716 1910 100 Plus
2R 25286936 2R 803458..803663 2152..1947 1030 100 Minus
2L 23513712 2L 22849428..22849633 1947..2152 1030 100 Plus
2R 25286936 2R 808682..808839 1335..1178 790 100 Minus
2L 23513712 2L 22844252..22844409 1178..1335 790 100 Plus
2R 25286936 2R 803999..804121 1837..1715 615 100 Minus
2L 23513712 2L 22848970..22849092 1715..1837 615 100 Plus
2R 25286936 2R 803717..803785 1948..1880 345 100 Minus
2L 23513712 2L 22849306..22849374 1880..1948 345 100 Plus
2R 25286936 2R 3929043..3929092 2711..2662 235 98 Minus
3L 28110227 3L 25682528..25682680 2628..2773 230 79.7 Plus
3L 28110227 3L 25715731..25715883 2628..2773 230 79.7 Plus
2R 25286936 2R 803836..803878 1879..1837 215 100 Minus
2L 23513712 2L 22849213..22849255 1837..1879 215 100 Plus
3L 28110227 3L 23447260..23447418 2622..2773 215 78.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 21614600..21615754 1..1154 5735 99.9 Plus
2R 25260384 2R 802777..803402 2773..2148 3115 99.8 Minus
2L 23513712 2L 22849689..22850314 2148..2773 3115 99.8 Plus
2R 25260384 2R 808242..808623 1716..1335 1910 100 Minus
2L 23513712 2L 22844468..22844849 1335..1716 1910 100 Plus
2R 25260384 2R 803458..803663 2152..1947 1030 100 Minus
2L 23513712 2L 22849428..22849633 1947..2152 1030 100 Plus
2R 25260384 2R 808682..808839 1335..1178 790 100 Minus
2L 23513712 2L 22844252..22844409 1178..1335 790 100 Plus
2R 25260384 2R 803999..804121 1837..1715 615 100 Minus
2L 23513712 2L 22848970..22849092 1715..1837 615 100 Plus
2R 25260384 2R 803717..803785 1948..1880 345 100 Minus
2L 23513712 2L 22849306..22849374 1880..1948 345 100 Plus
2R 25260384 2R 3930242..3930291 2711..2662 235 98 Minus
3L 28103327 3L 25708831..25708909 2628..2705 220 87.3 Plus
3L 28103327 3L 25675628..25675706 2628..2705 220 87.3 Plus
2R 25260384 2R 803836..803878 1879..1837 215 100 Minus
2L 23513712 2L 22849213..22849255 1837..1879 215 100 Plus
3L 28103327 3L 23440360..23440450 2622..2711 205 83.5 Plus
2R 25260384 2R 807886..807925 1283..1244 170 95 Minus
2L 23513712 2L 22845166..22845205 1244..1283 170 95 Plus
3L 28103327 3L 25708936..25708983 2726..2773 150 87.5 Plus
3L 28103327 3L 25675733..25675780 2726..2773 150 87.5 Plus
Blast to na_te.dros performed 2019-03-16 20:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 954..1083 2748..2615 182 63.7 Minus
Tc3 1743 Tc3 TC3 1743bp 1..64 2577..2639 173 76.6 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 3810..4000 1028..1211 142 58.3 Plus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 752..808 2748..2689 131 71.7 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1392..1479 2742..2654 126 65.9 Minus
transib1 2167 transib1 TRANSIB1 2167bp 1987..2075 2605..2693 121 62.6 Plus
Juan 4236 Juan JUAN 4236bp 1694..1818 2364..2241 120 60 Minus
gypsy9 5349 gypsy9 GYPSY9 5349bp 685..760 1182..1257 119 61.8 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 640..684 2720..2764 117 73.3 Plus

LP09246.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:49:41 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17697484..17698614 1..1130 99 <- Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:35:32 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 1..825 1438..2262 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:03:53 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 1..825 1438..2262 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:28:55 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RD 1..825 1438..2262 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:54:07 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 1..825 1438..2262 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:55:26 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RD 1..825 1438..2262 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:35:31 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 17..1548 1169..2699 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:03:53 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 17..1548 1169..2699 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:55 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 23..1624 1169..2769 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:54:07 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 17..1548 1169..2699 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:26 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 23..1624 1169..2769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:41 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21873769..21874927 1..1160 99 <- Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:41 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21873769..21874927 1..1160 99 <- Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:41 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21873769..21874927 1..1160 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:55 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17699491..17700649 1..1160 99 <- Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:26:22 Download gff for LP09246.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21614600..21615758 1..1160 99 <- Plus

LP09246.hyp Sequence

Translation from 389 to 1042

> LP09246.hyp
MSGSRRRRTVMGYYEYIMPGIYEYPLIQCDASAIRSYSIDSIMTSASSTW
SIPDSNAAYVAGPMGVIHYQSDMQTHLALPTRQNLETGLIYPTIESNSCF
HEPNLEYVQMENEHTDDDEGYGYEIPEIVLCLNRSNSESGAAEESGDSQR
SSKSYSSVEISEQSRSGEYVKLESVFRRRRKVSQKRKYTTEQGYLVEEPT
SEPSEEDAEEQAPKSRK*

LP09246.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31178-PB 217 CG31178-PB 1..217 1..217 1123 100 Plus

LP09246.pep Sequence

Translation from 1437 to 2261

> LP09246.pep
MRNKFQSAIRGVTRQYIIRSWPRGRELLRTQLIIPPSSTSSPFTCRNYSK
FSTHLSMERALELLCNLDDEERGNLRSALGRLDADKEKKLYESQLAFGSW
RTRFGRLSNKTELGQVIAGTFCAVPDDWLRKKLVETAASPTAGQLYSIFF
VNAVPFIAFGFLDNFIMIMAGEYIEYYLGHFITLSTMAAAGLGNTISDIL
GITMATYVENGCQILGLKQPNLTPAQFELKSSKRSSSYGRIVGITVGCLL
GMCPLWFMDEKADKVNVKDEIPKN*

LP09246.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24043-PA 276 GF24043-PA 37..262 40..263 937 77.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10759-PA 1696 GH10759-PA 1515..1696 46..269 714 63.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17715-PB 274 CG17715-PB 1..274 1..274 1422 100 Plus
CG17715-PD 274 CG17715-PD 1..274 1..274 1422 100 Plus
CG17715-PG 269 CG17715-PG 1..267 1..267 1373 98.9 Plus
CG17715-PH 268 CG17715-PH 1..268 1..274 1372 97.4 Plus
CG17715-PC 233 CG17715-PC 1..233 1..274 1150 84.7 Plus
CG17715-PF 233 CG17715-PF 1..233 1..274 1150 84.7 Plus
CG17715-PE 135 CG17715-PE 1..133 1..133 693 100 Plus
CG17715-PA 135 CG17715-PA 1..133 1..133 693 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11672-PA 207 GI11672-PA 1..201 61..262 862 79.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25632-PA 151 GL25632-PA 1..131 133..263 620 86.3 Plus
Dper\GL25631-PA 119 GL25631-PA 51..102 43..94 214 76.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25361-PA 222 GA25361-PA 32..202 94..263 789 84.8 Plus
Dpse\GA25360-PA 119 GA25360-PA 51..102 43..94 214 76.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13036-PA 152 GJ13036-PA 19..145 135..261 574 82.7 Plus
Dvir\GJ13025-PA 121 GJ13025-PA 62..110 46..94 164 65.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14771-PA 87 GK14771-PA 1..84 187..270 367 83.3 Plus
Dwil\GK14770-PA 92 GK14770-PA 47..88 51..92 161 69 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22675-PA 214 GE22675-PA 111..213 171..273 542 97.1 Plus