Clone LP09277 Report

Search the DGRC for LP09277

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:92
Well:77
Vector:pOT2
Associated Gene/TranscriptSlc45-1-RA
Protein status:LP09277.pep: gold
Sequenced Size:2970

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4484 2003-01-01 Sim4 clustering to Release 3
CG4484 2008-04-29 Release 5.5 accounting
CG4484 2008-08-15 Release 5.9 accounting
CG4484 2008-12-18 5.12 accounting

Clone Sequence Records

LP09277.complete Sequence

2970 bp (2970 high quality bases) assembled on 2006-01-20

GenBank Submission: BT024227

> LP09277.complete
AGCAGACCAAGATCATCTCGAGCAGTTGTCCGAAGGCGATTTGGCCATCC
AAAAATAGACCAAAGTCATCGAAAGTTGAGGCACCGCAAACAAAAAGTTC
TGCAAAAAATAGAACATAAATTTTCCATTTCGTGCGTATCGATTCGAGGG
ACATAATTCGGAACTGCGCAGTTTGCCGGGAAATTGCGAGGAAAACTCTT
CTTTCATGTCTTGCCAAAATCTTCGCAGCGTTCAGGCCAAAGGAGTAAAC
AGCTGCCGCGCTCGACAAGCGGCAATGTCAGCAGTTTAATAAGAAAGTAA
AAATCATACAACCAAACGAATAACAAATCCATCGGGCAACGAGCAGATAT
AAAGTAGATATATCATTAAAATTGATAATAATAATAATTCGCCAAAGTGC
AAGTGAATCGAGAGCGACAGAGAAGAGTGCGGAACAACTTTCCGCAGGAA
AACAAAAACAGGAGGACCGAGACTGGGGTGCAAAAATTGATTTCGTTAGC
CTTTTGCCAACACCAATTGCATGGGTAAAGTTATGAGAGTGAATTCATTA
TCGCCGCCCGCCCACAACTGCCACGCCCACGCTCGCTCCAAGCAACAAAA
GCAGAAACAATTGAAATTAAAGAAAATCGAAATATATTTTATGTTCAGCA
ATTTGTGCAAGCGAAAAACTTTAACGGAGTATAATTTATTGACACTAAAA
CAAAGTCGGGATAGTGAGTGAAGCAAAGCGCTTAAACAGTGACAGTGATC
GTTAAAACTTTAATCAACATAAAACATAAGAAGAAAAATTAGTCACATTT
CGTAGCAAAAATAAATAGTTAGAGGAACGATTGCGTGAGGAGCGTGGGCT
GTCAGCAGATCAAGGATTGCCACACATACAGTCAGTAAGACCGGATCAAA
ATGGTTGGAGTTACTGCCGACGCCTCGCAGGCGAATCAGCTGTCCTCGGT
CCGGAACCCGATGATCAAGTACATGCTGAAAACACGGGAGAATCATGCTC
GGGAACAGGATCGCGACTACTCGCATGTCTTCCGCCGGAAGACGCGGTTC
GAGATGTTTCGATTGTCCGCCATCGCCATGGCCATTGAATTTGCCTATGC
GGCGGAGACGAGTTTCGTCTCTCCGATTCTCCTACAGATCGGTGTGGATC
ACAAACACATGTCCATGACCTGGGGACTGTCGCCACTGATTGGATTCTTT
ATGTCCCCGCTGCTGGGAAGTATTAGCGATCGCTGCAAGCTTCGTTGGGG
TCGCCGACGTCCAATTATCTCGATTCTATCATTTGGCATAATGTGCGGTT
TGATTCTGGTGCCATATGGCAAGGATCTGGGTCTGCTGCTTGGCGATGCC
GGATATACTTATGCAGAGTCAGCCTTGAATTTCACATCTTCGTCGGGGGG
ATCTGTGGCTGCTTTGGTTTCGGGTGAAGCGACGACAGGACCTTCTGCAT
CCGACTATAAGTTCGCCGTGATCCTTACGATTTTGGGCATGGTCCTATTG
GATTTCGATGCGGATACCTGCCAGACACCGGCTCGCACTTATTTACTGGA
TATGTGTGTGCCAGAGGAGCAGCCGAAAGCCATGACCATGTTTGCGCTCT
TCGCGGGATTCGGCGGCACGATTGGATATGCCATTGGAGGAGTGGATTGG
GAGACAACGCATATTGGCAGCTTCATGGGTGGCAATATACCCACTGTATT
CACCCTGGTCACCATCATATTCGCGGTGTGCTATCTTATCACGGTGACCA
CATTCCGTGAAATTCCATTGCCCTTGATCGAGCAGGATGAGCTGCTGAGA
CCGCTGTCCGAACAGGCCATCAAGAAGGAGTTGAAAAAGAAGAACAATAC
CATTTACTATATCCAGGAGACCACACAGCTGGAGCTTCAGATGGCCAGTG
ATGATCCCAAGCGATTGGAGGCACTGCAAGGCAGCTATCAGAATGGCTAT
TCACCCGCTGTGGAGAAGCAAGGGAAATCCCAGGATTTGGAGACCCAGTC
GGATTACGATGCTCCCGTCTCCCTTAAGGCCTATCTCAAGAGCATCTTCA
TCATGCCCTACTCGATGCGCATGCTGGCCCTCACCAATCTCTTCTGCTGG
ATGGGCCACGTCACCTATTGCCTGTACTTCACGGACTTTGTGGGTGAGGC
AGTTTTCCACGGTGATCCCACGGCTGCTCCCAACTCGGAAGCTGCTCTCA
ACTACGAGGCTGGAGTGCGATTTGGTTGCTGGGGAATGGCCATATACGCA
TTTTCCTGCTCCATTTACTCGCTGTCGGTGACCAAGTTAATGAAGTGGTT
CGGAACCAAGGCGGTTTACATTAGTGGAATGATTTACTATGGTATCGGAA
TGCTTGTCCTGGGCTTGTGGCCAACTAAGTGGGGAGTCTTGGTATTCAGC
ACGTCAGCTGGTATTCTGTATGGAACCATTTTCACGGTGCCTTTCATATT
GGTGGCTAGATATCATGCCAAAAATTGTTTCTCTATTAAGAATGGAGAGA
TAGTACCACTGAAACAGGCTCGTGGATTGGGCACTGATGTGGCCATTATC
AGCAGTATGGTTTTTATTGCCCAGTTGATTGTATCCCTTTCCGTGGGTCC
TTTGGTATCCTGGATGGACACAACTTGTGCCGTGCTCTACGCCTCGACGT
TTCTGTCCTTTTTGGCGGCCATTGCAGCCATGTTTGTGTTATATGTCTAG
GAATATAAGGATATAGCGAACAAGTGTCCAATATGAACACAAATGTTACA
TGATTTTACGTAGCGTAAATGTATCTAGTTGAGTATCTTTGCCTACTTTC
TGGCAGTATCTGCGACTGCACTCACAATGTTGTGGCATACTTTAAGGATG
AAGCGTATATTGTACTTGTATTCATTGAACATTTAATTTTTTTTTGTAAA
CTGCATGAATTATATGAATTTAAATTAGTGAAATACATTTATTTCTACCT
TAAAAAAAAAAAAAAAAAAA

LP09277.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4484-RA 3064 CG4484-RA 110..3063 1..2954 14770 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9195991..9197417 2303..877 6940 99.1 Minus
chr3L 24539361 chr3L 9199875..9200748 881..1 4205 98.8 Minus
chr3L 24539361 chr3L 9194955..9195427 2951..2479 2275 98.7 Minus
chr3L 24539361 chr3L 9195488..9195663 2478..2303 880 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9204098..9205524 2303..877 7135 100 Minus
3L 28110227 3L 9207973..9208853 881..1 4405 100 Minus
3L 28110227 3L 9203062..9203537 2954..2479 2380 100 Minus
3L 28110227 3L 9203598..9203773 2478..2303 880 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9197198..9198624 2303..877 7135 100 Minus
3L 28103327 3L 9201073..9201953 881..1 4405 100 Minus
3L 28103327 3L 9196162..9196637 2954..2479 2380 100 Minus
3L 28103327 3L 9196698..9196873 2478..2303 880 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:58:47 has no hits.

LP09277.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:59:43 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9194955..9195427 2479..2951 98 <- Minus
chr3L 9195488..9195662 2304..2478 100 <- Minus
chr3L 9195991..9197412 882..2303 99 <- Minus
chr3L 9199875..9200748 1..881 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:39:43 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
CG4484-RA 1..1800 901..2700 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:36:57 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
CG4484-RA 1..1800 901..2700 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:19:33 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
Slc45-1-RB 1..1800 901..2700 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:11:45 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
CG4484-RA 1..1800 901..2700 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:47:38 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
Slc45-1-RB 1..1800 901..2700 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:08:43 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
CG4484-RA 1..2051 901..2951 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:36:57 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
CG4484-RA 1..2951 1..2951 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:19:33 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
Slc45-1-RA 1..2951 1..2951 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:11:46 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
CG4484-RA 1..2051 901..2951 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:47:38 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
Slc45-1-RA 1..2951 1..2951 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:59:43 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9203065..9203537 2479..2951 100 <- Minus
3L 9203598..9203772 2304..2478 100 <- Minus
3L 9204098..9205519 882..2303 100 <- Minus
3L 9207973..9208853 1..881 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:59:43 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9203065..9203537 2479..2951 100 <- Minus
3L 9203598..9203772 2304..2478 100 <- Minus
3L 9204098..9205519 882..2303 100 <- Minus
3L 9207973..9208853 1..881 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:59:43 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9203065..9203537 2479..2951 100 <- Minus
3L 9203598..9203772 2304..2478 100 <- Minus
3L 9204098..9205519 882..2303 100 <- Minus
3L 9207973..9208853 1..881 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:19:33 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9196165..9196637 2479..2951 100 <- Minus
arm_3L 9196698..9196872 2304..2478 100 <- Minus
arm_3L 9197198..9198619 882..2303 100 <- Minus
arm_3L 9201073..9201953 1..881 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:00:19 Download gff for LP09277.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9196165..9196637 2479..2951 100 <- Minus
3L 9196698..9196872 2304..2478 100 <- Minus
3L 9197198..9198619 882..2303 100 <- Minus
3L 9201073..9201953 1..881 100   Minus

LP09277.pep Sequence

Translation from 900 to 2699

> LP09277.pep
MVGVTADASQANQLSSVRNPMIKYMLKTRENHAREQDRDYSHVFRRKTRF
EMFRLSAIAMAIEFAYAAETSFVSPILLQIGVDHKHMSMTWGLSPLIGFF
MSPLLGSISDRCKLRWGRRRPIISILSFGIMCGLILVPYGKDLGLLLGDA
GYTYAESALNFTSSSGGSVAALVSGEATTGPSASDYKFAVILTILGMVLL
DFDADTCQTPARTYLLDMCVPEEQPKAMTMFALFAGFGGTIGYAIGGVDW
ETTHIGSFMGGNIPTVFTLVTIIFAVCYLITVTTFREIPLPLIEQDELLR
PLSEQAIKKELKKKNNTIYYIQETTQLELQMASDDPKRLEALQGSYQNGY
SPAVEKQGKSQDLETQSDYDAPVSLKAYLKSIFIMPYSMRMLALTNLFCW
MGHVTYCLYFTDFVGEAVFHGDPTAAPNSEAALNYEAGVRFGCWGMAIYA
FSCSIYSLSVTKLMKWFGTKAVYISGMIYYGIGMLVLGLWPTKWGVLVFS
TSAGILYGTIFTVPFILVARYHAKNCFSIKNGEIVPLKQARGLGTDVAII
SSMVFIAQLIVSLSVGPLVSWMDTTCAVLYASTFLSFLAAIAAMFVLYV*

LP09277.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23582-PA 601 GF23582-PA 1..601 1..599 2945 90.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15034-PA 599 GG15034-PA 1..599 1..599 3016 95.7 Plus
Dere\GG23080-PA 874 GG23080-PA 309..872 38..599 1280 45.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15639-PA 594 GH15639-PA 1..594 1..599 2470 76.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
Slc45-1-PD 599 CG4484-PD 1..599 1..599 3094 100 Plus
Slc45-1-PC 599 CG4484-PC 1..599 1..599 3094 100 Plus
Slc45-1-PB 599 CG4484-PB 1..599 1..599 3094 100 Plus
Slc45-1-PA 599 CG4484-PA 1..599 1..599 3094 100 Plus
CG45782-PA 615 CG45782-PA 40..613 26..599 1290 44.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12686-PA 596 GI12686-PA 1..596 1..599 2564 79.9 Plus
Dmoj\GI23971-PA 583 GI23971-PA 24..581 13..599 1218 42.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18421-PA 569 GL18421-PA 1..569 1..599 2436 77.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18215-PA 600 GA18215-PA 1..600 1..599 2733 84.9 Plus
Dpse\GA30172-PA 622 GA30172-PA 55..620 37..599 1321 44.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24888-PA 599 GM24888-PA 1..599 1..599 3151 98.2 Plus
Dsec\GM25226-PA 218 GM25226-PA 1..216 385..599 574 52.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17994-PA 145 GD17994-PA 1..145 385..529 432 55.2 Plus
Dsim\GD17993-PA 176 GD17993-PA 20..145 184..309 338 45.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12671-PA 596 GJ12671-PA 1..596 1..599 2581 79.6 Plus
Dvir\GJ11162-PA 298 GJ11162-PA 1..252 45..290 680 49.6 Plus
Dvir\GJ11163-PA 238 GJ11163-PA 4..236 361..599 617 50 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24322-PA 611 GK24322-PA 1..611 1..599 2691 83.4 Plus
Dwil\GK10931-PA 663 GK10931-PA 49..661 18..599 1304 44.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21258-PA 599 GE21258-PA 1..599 1..599 3126 97.2 Plus

LP09277.hyp Sequence

Translation from 900 to 2699

> LP09277.hyp
MVGVTADASQANQLSSVRNPMIKYMLKTRENHAREQDRDYSHVFRRKTRF
EMFRLSAIAMAIEFAYAAETSFVSPILLQIGVDHKHMSMTWGLSPLIGFF
MSPLLGSISDRCKLRWGRRRPIISILSFGIMCGLILVPYGKDLGLLLGDA
GYTYAESALNFTSSSGGSVAALVSGEATTGPSASDYKFAVILTILGMVLL
DFDADTCQTPARTYLLDMCVPEEQPKAMTMFALFAGFGGTIGYAIGGVDW
ETTHIGSFMGGNIPTVFTLVTIIFAVCYLITVTTFREIPLPLIEQDELLR
PLSEQAIKKELKKKNNTIYYIQETTQLELQMASDDPKRLEALQGSYQNGY
SPAVEKQGKSQDLETQSDYDAPVSLKAYLKSIFIMPYSMRMLALTNLFCW
MGHVTYCLYFTDFVGEAVFHGDPTAAPNSEAALNYEAGVRFGCWGMAIYA
FSCSIYSLSVTKLMKWFGTKAVYISGMIYYGIGMLVLGLWPTKWGVLVFS
TSAGILYGTIFTVPFILVARYHAKNCFSIKNGEIVPLKQARGLGTDVAII
SSMVFIAQLIVSLSVGPLVSWMDTTCAVLYASTFLSFLAAIAAMFVLYV*

LP09277.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Slc45-1-PD 599 CG4484-PD 1..599 1..599 3094 100 Plus
Slc45-1-PC 599 CG4484-PC 1..599 1..599 3094 100 Plus
Slc45-1-PB 599 CG4484-PB 1..599 1..599 3094 100 Plus
Slc45-1-PA 599 CG4484-PA 1..599 1..599 3094 100 Plus
CG45782-PA 615 CG45782-PA 40..613 26..599 1290 44.8 Plus