BDGP Sequence Production Resources |
Search the DGRC for LP09277
Library: | LP |
Tissue Source: | Drosophila melanogaster larval-early pupal |
Created by: | Ling Hong |
Date Registered: | 1998-06-11 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 92 |
Well: | 77 |
Vector: | pOT2 |
Associated Gene/Transcript | Slc45-1-RA |
Protein status: | LP09277.pep: gold |
Sequenced Size: | 2970 |
Gene | Date | Evidence |
---|---|---|
CG4484 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4484 | 2008-04-29 | Release 5.5 accounting |
CG4484 | 2008-08-15 | Release 5.9 accounting |
CG4484 | 2008-12-18 | 5.12 accounting |
2970 bp (2970 high quality bases) assembled on 2006-01-20
GenBank Submission: BT024227
> LP09277.complete AGCAGACCAAGATCATCTCGAGCAGTTGTCCGAAGGCGATTTGGCCATCC AAAAATAGACCAAAGTCATCGAAAGTTGAGGCACCGCAAACAAAAAGTTC TGCAAAAAATAGAACATAAATTTTCCATTTCGTGCGTATCGATTCGAGGG ACATAATTCGGAACTGCGCAGTTTGCCGGGAAATTGCGAGGAAAACTCTT CTTTCATGTCTTGCCAAAATCTTCGCAGCGTTCAGGCCAAAGGAGTAAAC AGCTGCCGCGCTCGACAAGCGGCAATGTCAGCAGTTTAATAAGAAAGTAA AAATCATACAACCAAACGAATAACAAATCCATCGGGCAACGAGCAGATAT AAAGTAGATATATCATTAAAATTGATAATAATAATAATTCGCCAAAGTGC AAGTGAATCGAGAGCGACAGAGAAGAGTGCGGAACAACTTTCCGCAGGAA AACAAAAACAGGAGGACCGAGACTGGGGTGCAAAAATTGATTTCGTTAGC CTTTTGCCAACACCAATTGCATGGGTAAAGTTATGAGAGTGAATTCATTA TCGCCGCCCGCCCACAACTGCCACGCCCACGCTCGCTCCAAGCAACAAAA GCAGAAACAATTGAAATTAAAGAAAATCGAAATATATTTTATGTTCAGCA ATTTGTGCAAGCGAAAAACTTTAACGGAGTATAATTTATTGACACTAAAA CAAAGTCGGGATAGTGAGTGAAGCAAAGCGCTTAAACAGTGACAGTGATC GTTAAAACTTTAATCAACATAAAACATAAGAAGAAAAATTAGTCACATTT CGTAGCAAAAATAAATAGTTAGAGGAACGATTGCGTGAGGAGCGTGGGCT GTCAGCAGATCAAGGATTGCCACACATACAGTCAGTAAGACCGGATCAAA ATGGTTGGAGTTACTGCCGACGCCTCGCAGGCGAATCAGCTGTCCTCGGT CCGGAACCCGATGATCAAGTACATGCTGAAAACACGGGAGAATCATGCTC GGGAACAGGATCGCGACTACTCGCATGTCTTCCGCCGGAAGACGCGGTTC GAGATGTTTCGATTGTCCGCCATCGCCATGGCCATTGAATTTGCCTATGC GGCGGAGACGAGTTTCGTCTCTCCGATTCTCCTACAGATCGGTGTGGATC ACAAACACATGTCCATGACCTGGGGACTGTCGCCACTGATTGGATTCTTT ATGTCCCCGCTGCTGGGAAGTATTAGCGATCGCTGCAAGCTTCGTTGGGG TCGCCGACGTCCAATTATCTCGATTCTATCATTTGGCATAATGTGCGGTT TGATTCTGGTGCCATATGGCAAGGATCTGGGTCTGCTGCTTGGCGATGCC GGATATACTTATGCAGAGTCAGCCTTGAATTTCACATCTTCGTCGGGGGG ATCTGTGGCTGCTTTGGTTTCGGGTGAAGCGACGACAGGACCTTCTGCAT CCGACTATAAGTTCGCCGTGATCCTTACGATTTTGGGCATGGTCCTATTG GATTTCGATGCGGATACCTGCCAGACACCGGCTCGCACTTATTTACTGGA TATGTGTGTGCCAGAGGAGCAGCCGAAAGCCATGACCATGTTTGCGCTCT TCGCGGGATTCGGCGGCACGATTGGATATGCCATTGGAGGAGTGGATTGG GAGACAACGCATATTGGCAGCTTCATGGGTGGCAATATACCCACTGTATT CACCCTGGTCACCATCATATTCGCGGTGTGCTATCTTATCACGGTGACCA CATTCCGTGAAATTCCATTGCCCTTGATCGAGCAGGATGAGCTGCTGAGA CCGCTGTCCGAACAGGCCATCAAGAAGGAGTTGAAAAAGAAGAACAATAC CATTTACTATATCCAGGAGACCACACAGCTGGAGCTTCAGATGGCCAGTG ATGATCCCAAGCGATTGGAGGCACTGCAAGGCAGCTATCAGAATGGCTAT TCACCCGCTGTGGAGAAGCAAGGGAAATCCCAGGATTTGGAGACCCAGTC GGATTACGATGCTCCCGTCTCCCTTAAGGCCTATCTCAAGAGCATCTTCA TCATGCCCTACTCGATGCGCATGCTGGCCCTCACCAATCTCTTCTGCTGG ATGGGCCACGTCACCTATTGCCTGTACTTCACGGACTTTGTGGGTGAGGC AGTTTTCCACGGTGATCCCACGGCTGCTCCCAACTCGGAAGCTGCTCTCA ACTACGAGGCTGGAGTGCGATTTGGTTGCTGGGGAATGGCCATATACGCA TTTTCCTGCTCCATTTACTCGCTGTCGGTGACCAAGTTAATGAAGTGGTT CGGAACCAAGGCGGTTTACATTAGTGGAATGATTTACTATGGTATCGGAA TGCTTGTCCTGGGCTTGTGGCCAACTAAGTGGGGAGTCTTGGTATTCAGC ACGTCAGCTGGTATTCTGTATGGAACCATTTTCACGGTGCCTTTCATATT GGTGGCTAGATATCATGCCAAAAATTGTTTCTCTATTAAGAATGGAGAGA TAGTACCACTGAAACAGGCTCGTGGATTGGGCACTGATGTGGCCATTATC AGCAGTATGGTTTTTATTGCCCAGTTGATTGTATCCCTTTCCGTGGGTCC TTTGGTATCCTGGATGGACACAACTTGTGCCGTGCTCTACGCCTCGACGT TTCTGTCCTTTTTGGCGGCCATTGCAGCCATGTTTGTGTTATATGTCTAG GAATATAAGGATATAGCGAACAAGTGTCCAATATGAACACAAATGTTACA TGATTTTACGTAGCGTAAATGTATCTAGTTGAGTATCTTTGCCTACTTTC TGGCAGTATCTGCGACTGCACTCACAATGTTGTGGCATACTTTAAGGATG AAGCGTATATTGTACTTGTATTCATTGAACATTTAATTTTTTTTTGTAAA CTGCATGAATTATATGAATTTAAATTAGTGAAATACATTTATTTCTACCT TAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4484-RA | 3064 | CG4484-RA | 110..3063 | 1..2954 | 14770 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 9195991..9197417 | 2303..877 | 6940 | 99.1 | Minus |
chr3L | 24539361 | chr3L | 9199875..9200748 | 881..1 | 4205 | 98.8 | Minus |
chr3L | 24539361 | chr3L | 9194955..9195427 | 2951..2479 | 2275 | 98.7 | Minus |
chr3L | 24539361 | chr3L | 9195488..9195663 | 2478..2303 | 880 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 9204098..9205524 | 2303..877 | 7135 | 100 | Minus |
3L | 28110227 | 3L | 9207973..9208853 | 881..1 | 4405 | 100 | Minus |
3L | 28110227 | 3L | 9203062..9203537 | 2954..2479 | 2380 | 100 | Minus |
3L | 28110227 | 3L | 9203598..9203773 | 2478..2303 | 880 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 9197198..9198624 | 2303..877 | 7135 | 100 | Minus |
3L | 28103327 | 3L | 9201073..9201953 | 881..1 | 4405 | 100 | Minus |
3L | 28103327 | 3L | 9196162..9196637 | 2954..2479 | 2380 | 100 | Minus |
3L | 28103327 | 3L | 9196698..9196873 | 2478..2303 | 880 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 9194955..9195427 | 2479..2951 | 98 | <- | Minus |
chr3L | 9195488..9195662 | 2304..2478 | 100 | <- | Minus |
chr3L | 9195991..9197412 | 882..2303 | 99 | <- | Minus |
chr3L | 9199875..9200748 | 1..881 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4484-RA | 1..1800 | 901..2700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4484-RA | 1..1800 | 901..2700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slc45-1-RB | 1..1800 | 901..2700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4484-RA | 1..1800 | 901..2700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slc45-1-RB | 1..1800 | 901..2700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4484-RA | 1..2051 | 901..2951 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4484-RA | 1..2951 | 1..2951 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slc45-1-RA | 1..2951 | 1..2951 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4484-RA | 1..2051 | 901..2951 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slc45-1-RA | 1..2951 | 1..2951 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9203065..9203537 | 2479..2951 | 100 | <- | Minus |
3L | 9203598..9203772 | 2304..2478 | 100 | <- | Minus |
3L | 9204098..9205519 | 882..2303 | 100 | <- | Minus |
3L | 9207973..9208853 | 1..881 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9203065..9203537 | 2479..2951 | 100 | <- | Minus |
3L | 9203598..9203772 | 2304..2478 | 100 | <- | Minus |
3L | 9204098..9205519 | 882..2303 | 100 | <- | Minus |
3L | 9207973..9208853 | 1..881 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9203065..9203537 | 2479..2951 | 100 | <- | Minus |
3L | 9203598..9203772 | 2304..2478 | 100 | <- | Minus |
3L | 9204098..9205519 | 882..2303 | 100 | <- | Minus |
3L | 9207973..9208853 | 1..881 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 9196165..9196637 | 2479..2951 | 100 | <- | Minus |
arm_3L | 9196698..9196872 | 2304..2478 | 100 | <- | Minus |
arm_3L | 9197198..9198619 | 882..2303 | 100 | <- | Minus |
arm_3L | 9201073..9201953 | 1..881 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9196165..9196637 | 2479..2951 | 100 | <- | Minus |
3L | 9196698..9196872 | 2304..2478 | 100 | <- | Minus |
3L | 9197198..9198619 | 882..2303 | 100 | <- | Minus |
3L | 9201073..9201953 | 1..881 | 100 | Minus |
Translation from 900 to 2699
> LP09277.pep MVGVTADASQANQLSSVRNPMIKYMLKTRENHAREQDRDYSHVFRRKTRF EMFRLSAIAMAIEFAYAAETSFVSPILLQIGVDHKHMSMTWGLSPLIGFF MSPLLGSISDRCKLRWGRRRPIISILSFGIMCGLILVPYGKDLGLLLGDA GYTYAESALNFTSSSGGSVAALVSGEATTGPSASDYKFAVILTILGMVLL DFDADTCQTPARTYLLDMCVPEEQPKAMTMFALFAGFGGTIGYAIGGVDW ETTHIGSFMGGNIPTVFTLVTIIFAVCYLITVTTFREIPLPLIEQDELLR PLSEQAIKKELKKKNNTIYYIQETTQLELQMASDDPKRLEALQGSYQNGY SPAVEKQGKSQDLETQSDYDAPVSLKAYLKSIFIMPYSMRMLALTNLFCW MGHVTYCLYFTDFVGEAVFHGDPTAAPNSEAALNYEAGVRFGCWGMAIYA FSCSIYSLSVTKLMKWFGTKAVYISGMIYYGIGMLVLGLWPTKWGVLVFS TSAGILYGTIFTVPFILVARYHAKNCFSIKNGEIVPLKQARGLGTDVAII SSMVFIAQLIVSLSVGPLVSWMDTTCAVLYASTFLSFLAAIAAMFVLYV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23582-PA | 601 | GF23582-PA | 1..601 | 1..599 | 2945 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15034-PA | 599 | GG15034-PA | 1..599 | 1..599 | 3016 | 95.7 | Plus |
Dere\GG23080-PA | 874 | GG23080-PA | 309..872 | 38..599 | 1280 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15639-PA | 594 | GH15639-PA | 1..594 | 1..599 | 2470 | 76.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Slc45-1-PD | 599 | CG4484-PD | 1..599 | 1..599 | 3094 | 100 | Plus |
Slc45-1-PC | 599 | CG4484-PC | 1..599 | 1..599 | 3094 | 100 | Plus |
Slc45-1-PB | 599 | CG4484-PB | 1..599 | 1..599 | 3094 | 100 | Plus |
Slc45-1-PA | 599 | CG4484-PA | 1..599 | 1..599 | 3094 | 100 | Plus |
CG45782-PA | 615 | CG45782-PA | 40..613 | 26..599 | 1290 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12686-PA | 596 | GI12686-PA | 1..596 | 1..599 | 2564 | 79.9 | Plus |
Dmoj\GI23971-PA | 583 | GI23971-PA | 24..581 | 13..599 | 1218 | 42.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18421-PA | 569 | GL18421-PA | 1..569 | 1..599 | 2436 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18215-PA | 600 | GA18215-PA | 1..600 | 1..599 | 2733 | 84.9 | Plus |
Dpse\GA30172-PA | 622 | GA30172-PA | 55..620 | 37..599 | 1321 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24888-PA | 599 | GM24888-PA | 1..599 | 1..599 | 3151 | 98.2 | Plus |
Dsec\GM25226-PA | 218 | GM25226-PA | 1..216 | 385..599 | 574 | 52.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17994-PA | 145 | GD17994-PA | 1..145 | 385..529 | 432 | 55.2 | Plus |
Dsim\GD17993-PA | 176 | GD17993-PA | 20..145 | 184..309 | 338 | 45.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12671-PA | 596 | GJ12671-PA | 1..596 | 1..599 | 2581 | 79.6 | Plus |
Dvir\GJ11162-PA | 298 | GJ11162-PA | 1..252 | 45..290 | 680 | 49.6 | Plus |
Dvir\GJ11163-PA | 238 | GJ11163-PA | 4..236 | 361..599 | 617 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24322-PA | 611 | GK24322-PA | 1..611 | 1..599 | 2691 | 83.4 | Plus |
Dwil\GK10931-PA | 663 | GK10931-PA | 49..661 | 18..599 | 1304 | 44.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21258-PA | 599 | GE21258-PA | 1..599 | 1..599 | 3126 | 97.2 | Plus |
Translation from 900 to 2699
> LP09277.hyp MVGVTADASQANQLSSVRNPMIKYMLKTRENHAREQDRDYSHVFRRKTRF EMFRLSAIAMAIEFAYAAETSFVSPILLQIGVDHKHMSMTWGLSPLIGFF MSPLLGSISDRCKLRWGRRRPIISILSFGIMCGLILVPYGKDLGLLLGDA GYTYAESALNFTSSSGGSVAALVSGEATTGPSASDYKFAVILTILGMVLL DFDADTCQTPARTYLLDMCVPEEQPKAMTMFALFAGFGGTIGYAIGGVDW ETTHIGSFMGGNIPTVFTLVTIIFAVCYLITVTTFREIPLPLIEQDELLR PLSEQAIKKELKKKNNTIYYIQETTQLELQMASDDPKRLEALQGSYQNGY SPAVEKQGKSQDLETQSDYDAPVSLKAYLKSIFIMPYSMRMLALTNLFCW MGHVTYCLYFTDFVGEAVFHGDPTAAPNSEAALNYEAGVRFGCWGMAIYA FSCSIYSLSVTKLMKWFGTKAVYISGMIYYGIGMLVLGLWPTKWGVLVFS TSAGILYGTIFTVPFILVARYHAKNCFSIKNGEIVPLKQARGLGTDVAII SSMVFIAQLIVSLSVGPLVSWMDTTCAVLYASTFLSFLAAIAAMFVLYV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Slc45-1-PD | 599 | CG4484-PD | 1..599 | 1..599 | 3094 | 100 | Plus |
Slc45-1-PC | 599 | CG4484-PC | 1..599 | 1..599 | 3094 | 100 | Plus |
Slc45-1-PB | 599 | CG4484-PB | 1..599 | 1..599 | 3094 | 100 | Plus |
Slc45-1-PA | 599 | CG4484-PA | 1..599 | 1..599 | 3094 | 100 | Plus |
CG45782-PA | 615 | CG45782-PA | 40..613 | 26..599 | 1290 | 44.8 | Plus |