Clone LP09309 Report

Search the DGRC for LP09309

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:93
Well:9
Vector:pOT2
Associated Gene/TranscriptCG9886-RA
Protein status:LP09309.pep: gold
Preliminary Size:2002
Sequenced Size:2066

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9886 2001-01-01 Release 2 assignment
CG9886 2001-10-10 Blastp of sequenced clone
CG9886 2003-01-01 Sim4 clustering to Release 3
CG9886 2008-04-29 Release 5.5 accounting
CG9886 2008-08-15 Release 5.9 accounting
CG9886 2008-12-18 5.12 accounting

Clone Sequence Records

LP09309.complete Sequence

2066 bp (2066 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061555

> LP09309.complete
ATATCTTGAGCTGTTTTGAAAATGATAAGTAAAACTGGAATTTCAGCATC
GCTGATTAGGATCGCCCTGTCCGAAGCACCTTTACATAATGGCCAAGCGA
CAGACTTGGGAGCAGATGCGCCAGATCTTTGTCCAGGCGGTAAACGCAGT
GCATCCCGAAAAGGTATTCGCTGACTTTCAAAAGTTCGATTTGCGGCCTC
AAATCGGGGAAAACGCAACGGATATATCCATAAAACTCAATGGAGAGCGC
CAAGACATCAGCGGCAAGACCTGCCACATAGTGGGGTTTGGCAAAGCAGT
CCTGGGAATGGCCAACAAAGTGCAACAGGATTTGGGAGCCACCTCGGCCG
GTGGAGTCCTCAGTGTACCGGTAAACACCCTGAAGCAGTTCCAACAACCG
GTGGCACCTGGTTTGGTTGTCCACGAAGGAGCAGCCAACAATCTGCCGGA
TGAGAATGCTCTCAAGGCAGCCCGGGAAATCAAGCAGCTGGCCGAAAAGA
TGACTGCCCAGGACATCCTCTTCGTCTTCATCTCCGGTGGCGGTTCTGCC
CTTTTGCCCTTGCCCCGGTCACCTTTGACGCTGGAGGACAAGCGCAGCAT
AGCGGATAAGCTCATGAAGCGGGGAGCCAGCATACAGGAGATCAATGCTG
TCAGGATTGCTTGCTCGGACATAAAGGGCGGTCGCTTGGCCAGGTTGGCC
GGCCAGGCGGGACTCCTGGTGACCTTTGTGCTCAGCGACATCATCGGTGA
TCCCTTGGAGCTGATAGCCTGCGGTCCCACCATACAACCCGAGGCGGCAG
CATCTCCATCCGACATCCTTAAAAAGCATCATGTGTGGGAGGAGCTGTCC
CCCGAGATTCGGCGGGTCTTTGAGCAGCCGGAGGAGCAGAAGAACACATC
GCTGCCCGAGCACAAGGTTTTTGTGGTGGGCAGCAATGTGATAGCCACTT
CCACAGCGGCTCATGAGGCCGAAAGGCTGGGCTACATTCCGTGCGTGCTC
AGTTGTGCTGTCCAGGGAGATGTGGCTCAAGTGGCTGGCGACTATCAGAG
ATTGCTGCACGGTATCCAGGAGGCCAAGCAGCATGGCATACTGGATCCTC
AACTCAGGGAGAAGTACGCCTTTGGGGAGAGAAGTTATCCGACTTTTCGG
AGGGCCCTAGAGGACCACATGAGCAGCAAGAAGCCACTGTTCCTGATCTG
TGGAGGAGAGCCAGTCATTAAAGTTTCTGGCCATGGATTGGGCGGCAGAA
GCCAGCACTTGGCCCTGCTGATGTCGCAGGCTCTGCACCGCGACGAGGCC
ATGCGGGACTGCACCTTCCTGAGCGCCGGAACCGACGGCATCGATGGACC
CACCGATGCGGCCGGAGCTTTTGGAGACAGCAGCGTGGTGGAATCCTATC
TGGGTGATCATACCCTCGATGAACTGGCCGAAACGCTGCGAAACTGCGAC
AGCTACAACTTTTACAAGAATCTCGCGCAGGGAGAGCACCACGTGCTCAC
TGGACACACGGGTACCAATGTGATGGATCTGCATTTCCTGGTCGTGCCGT
AGTGTAACGCCCTCGCTCGCCGATAAATCCATTTAGTTGTATACTTGCAT
ATACATATATGTACATATGTGGGGCAGTTCGTTAATGGAGCTGCTCTTGA
ACCGCAGACGGGCAATAGTCGTTTAAATTTGTTTTTACGATTTTCCTCTT
TAATTTTGCTCTATGAAATTTTTACGACTTTTTTCATTAACATTTTTAAT
ATCCATTCAAATTCAAATAATTTTGTGATCTTTATGCTCTGAGACGGTCT
TCAGTGACAGCATAAAACGGCAATTAGCTTTCGTCTCCGGTTATGAAATC
AGCCTGGAATTGTCTTGATTGTAATTATGTGGCAGGCAATAGGCAAACCG
AACGACAGATGTGATAAATCAATTTGTATATGCGATCACCACGGAGCATA
AATATATCTGAGTAATTTCCATTTAATTTCCATTTCTTTTGTACTGCGTC
TCATAAAAATGCGCTGCTAATAAATCATCTTAATTGTTCGAAACGCCAAA
AAAAAAAAAAAAAAAA

LP09309.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9886.b 2354 CG9886.b 104..2153 1..2050 10250 100 Plus
CG9886.a 2598 CG9886.a 104..2153 1..2050 10250 100 Plus
CG9886-RA 2195 CG9886-RA 104..2153 1..2050 10250 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2420554..2421783 1..1230 5955 98.9 Plus
chr2L 23010047 chr2L 2421832..2422656 1223..2047 4020 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2420808..2422037 1..1230 6135 99.9 Plus
2L 23513712 2L 2422086..2422913 1223..2050 4140 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2420808..2422037 1..1230 6135 99.9 Plus
2L 23513712 2L 2422086..2422913 1223..2050 4140 100 Plus
Blast to na_te.dros performed 2019-03-16 22:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 4994..5048 1561..1618 120 72.4 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1099..1134 1620..1582 116 82.1 Minus

LP09309.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:12:31 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2420554..2421775 1..1222 99 -> Plus
chr2L 2421832..2422656 1223..2047 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:39:44 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
CG9886-RA 1..1464 89..1552 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:59 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
CG9886-RA 1..1464 89..1552 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:12:36 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
CG9886-RA 1..1464 89..1552 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:03 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
CG9886-RA 1..1464 89..1552 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:00 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
CG9886-RA 1..1464 89..1552 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:12:17 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
CG9886-RA 1..2047 1..2047 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:59 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
CG9886-RA 1..2047 1..2047 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:36 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
CG9886-RA 1..2025 23..2047 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:03 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
CG9886-RA 1..2047 1..2047 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:00 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
CG9886-RA 1..2025 23..2047 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:12:31 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2420808..2422029 1..1222 100 -> Plus
2L 2422086..2422910 1223..2047 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:12:31 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2420808..2422029 1..1222 100 -> Plus
2L 2422086..2422910 1223..2047 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:12:31 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2420808..2422029 1..1222 100 -> Plus
2L 2422086..2422910 1223..2047 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:36 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2420808..2422029 1..1222 100 -> Plus
arm_2L 2422086..2422910 1223..2047 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:11 Download gff for LP09309.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2420808..2422029 1..1222 100 -> Plus
2L 2422086..2422910 1223..2047 100   Plus

LP09309.pep Sequence

Translation from 88 to 1551

> LP09309.pep
MAKRQTWEQMRQIFVQAVNAVHPEKVFADFQKFDLRPQIGENATDISIKL
NGERQDISGKTCHIVGFGKAVLGMANKVQQDLGATSAGGVLSVPVNTLKQ
FQQPVAPGLVVHEGAANNLPDENALKAAREIKQLAEKMTAQDILFVFISG
GGSALLPLPRSPLTLEDKRSIADKLMKRGASIQEINAVRIACSDIKGGRL
ARLAGQAGLLVTFVLSDIIGDPLELIACGPTIQPEAAASPSDILKKHHVW
EELSPEIRRVFEQPEEQKNTSLPEHKVFVVGSNVIATSTAAHEAERLGYI
PCVLSCAVQGDVAQVAGDYQRLLHGIQEAKQHGILDPQLREKYAFGERSY
PTFRRALEDHMSSKKPLFLICGGEPVIKVSGHGLGGRSQHLALLMSQALH
RDEAMRDCTFLSAGTDGIDGPTDAAGAFGDSSVVESYLGDHTLDELAETL
RNCDSYNFYKNLAQGEHHVLTGHTGTNVMDLHFLVVP*

LP09309.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20583-PA 487 GF20583-PA 2..487 3..487 1888 71.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24857-PA 487 GG24857-PA 1..487 1..487 2456 94.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10262-PA 487 GH10262-PA 1..487 1..487 1784 67.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9886-PB 487 CG9886-PB 1..487 1..487 2507 100 Plus
CG9886-PA 487 CG9886-PA 1..487 1..487 2507 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15550-PA 487 GI15550-PA 1..487 1..487 1692 68.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26557-PA 504 GL26557-PA 1..504 1..487 1933 73.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22100-PA 504 GA22100-PA 1..504 1..487 1951 73.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18341-PA 487 GM18341-PA 1..487 1..487 2504 96.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23155-PA 439 GD23155-PA 1..439 1..439 2263 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17291-PA 487 GJ17291-PA 1..487 1..487 1723 70.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23939-PA 489 GK23939-PA 1..489 1..487 1604 65.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18155-PA 487 GE18155-PA 1..487 1..487 2458 94.9 Plus

LP09309.hyp Sequence

Translation from 88 to 1551

> LP09309.hyp
MAKRQTWEQMRQIFVQAVNAVHPEKVFADFQKFDLRPQIGENATDISIKL
NGERQDISGKTCHIVGFGKAVLGMANKVQQDLGATSAGGVLSVPVNTLKQ
FQQPVAPGLVVHEGAANNLPDENALKAAREIKQLAEKMTAQDILFVFISG
GGSALLPLPRSPLTLEDKRSIADKLMKRGASIQEINAVRIACSDIKGGRL
ARLAGQAGLLVTFVLSDIIGDPLELIACGPTIQPEAAASPSDILKKHHVW
EELSPEIRRVFEQPEEQKNTSLPEHKVFVVGSNVIATSTAAHEAERLGYI
PCVLSCAVQGDVAQVAGDYQRLLHGIQEAKQHGILDPQLREKYAFGERSY
PTFRRALEDHMSSKKPLFLICGGEPVIKVSGHGLGGRSQHLALLMSQALH
RDEAMRDCTFLSAGTDGIDGPTDAAGAFGDSSVVESYLGDHTLDELAETL
RNCDSYNFYKNLAQGEHHVLTGHTGTNVMDLHFLVVP*

LP09309.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9886-PB 487 CG9886-PB 1..487 1..487 2507 100 Plus
CG9886-PA 487 CG9886-PA 1..487 1..487 2507 100 Plus