Clone LP09339 Report

Search the DGRC for LP09339

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:93
Well:39
Vector:pOT2
Associated Gene/Transcriptect-RA
Protein status:LP09339.pep: gold
Preliminary Size:2107
Sequenced Size:2145

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11965 2001-01-01 Release 2 assignment
CG6611 2001-01-01 Release 2 assignment
CG6611 2001-10-10 Blastp of sequenced clone
ect 2008-04-29 Release 5.5 accounting
ect 2008-08-15 Release 5.9 accounting
ect 2008-12-18 5.12 accounting

Clone Sequence Records

LP09339.complete Sequence

2145 bp (2145 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061556

> LP09339.complete
TCAGTCGAGCGAGACAGTTGTGTGCGCGCCGGTGTTGGAAACCCGAACTC
GAATTCGAACCACTGAAGAGCCAGCCAAGCTCAGGCCAGAATCCACCATC
GACTCGAATCGAATCGAAACGAATCGAATCGCCACAAAAATAAAAAAGAA
ACCAACACAAACAGATCTGACAACATGAAGTTCGTGATTTTGCTGTGCGT
GCTGAGCGCGTTGCTGCTGCAAATTGAAGCGTCGCCCCTCCAGCGGCTTT
CGAGAAGCGAGCGGGCTGTTTCCCGCCAACAGACGGTCAACAATGAGGTG
GCTCCGGCGGTAGCTCCTGCCAGCGATGATGACGATGATGACGACGATGA
GGACGACGATGATGAGCCTGATCTAGGAGATCTGATCGATGACGATGATG
ATGATGATGAGGAGGAGGACGATGACGAGGACGAGGAGGATGATACGCCC
CAGGGTCAGGCTGCTCCAGCGGCCACTGCCAGCGATGATGACGAAGAGGA
AGACGATGATGATGACGATTATCTGGACAGGCTGTTCGATGATATCCTGG
GCGATGATGAAGATGAGGATGATGATGACGAGACACCCGCTGCCACCGCC
CAGCAGAGCGCTGTGGCCGCCGCTCCCGCCCAAACTCTGGATGAGGTCGC
CCCCGCTGCCGCCTCCTCCGTGAGCGCCGGTATCTCCGATGGTGTTGATC
TGCCCGCCGAGTCCGGAAATGCCGCTGAGGTCCTGGCCGCTGGAAATGCT
GCCGATGAGTCCGTTTCCGCTGCCGTTGCTCCGGCGCAAAACGCTGCCGC
CAGCAGCAGCAACAACGAAGGTATCGCCGGTGACGACGACGAGGAGGCCG
ACGATGATGATGACGATGACGACGATGACATTATCGGCGATGACATCATC
GAGGCCCGCCGTGAAGCACGTGACCTGAAGAACAACGTCATCGATATGTC
CACGGATGCTTTCCAGGCCCGCCACAACCACTTCATCGATGCCATCTTCT
CGAGGATCAATCGCATTGTTTCGGAAAACTATGATCCCTATGTGGTCAAT
CTAACGGGTCGCTCCGTTTTGCCAAATGCCGCCAGTGGGTCAAATGTGAA
GGCCGCTAACAAGAAGCAATCGACGAGCAGCAAGGTCGGAGGTCACAAGA
AGCTGAAGAACACGCGCTCGGAGCCCCGTTCCGTCAATTCGAACCAGGAG
GCACGGGAGGCTGCGGTGAAGCTGCAGGAGCAATTGACGCAATTACAGTC
CGAGCTGGCCATCAAAGCCGTGGAGAAGAGGCCCAGCCCCACATCGCCTG
CCACCGAGTCCGAGTCCGATTCCGGATCACCGAAGGCGGAAACGCGCACC
GTTTCGGGCTCAAAAACGGGCCAAAAGAAGTCCTCGAACAAGCAGAACAC
GAAAAAGGCGTCGGGCCTGAAATCAGGAAACTACAATCAGCCAGCGGGGG
CCAGCAAGGCGGGAGCCTCCAGCGCTGGTGCAGTGGAAAAGCTGCAAAAG
GCCGAGGGCAGGCTCTCCGGACTGGCATCCTTGAAGCGCGTGGGAAATGT
CAAGGTGATCAGCGATGCCGAGGGACGCAACTCGACGATCAAGGCCAAGT
TCACGCTGGGTCCCTTGGTTCTGCGGGTGGAGAAGTCCTTTAAGAAGGGC
AGCGTGAGGAGCGTGAAGAGTGCGACCGCCAGGACGAACGAGATGATGGG
TCGCATCAAGTTCAGCGTGCTCGATGATCGGGCCACCCTGATGTCCATCA
AGGTGCAGCAGCCCAAGCAGGTGGAGGTGGAGAGCAAGGACAATCACGAC
CGCACCCGCGAATTTGTGTGGCGACGCACGCCCAAAATTGCCAAATTGGT
CAACGAGAAACTGAAATTGGCAGCCGAATCCTTGTTTGCCCCACAGGGCG
TCGAGGTTGTCAGGCTCTGAGTGCTAAAAAAAGTAAGGGGTCCTGCAGGA
TAACAGCCATTTCTCACTGCTCTGCTCAGCTGTAGTCTACGCCTAATTGT
AATGCCTAATTTATTTATTTATTTAACTTATTTACCCATCTATTTATCAA
CCCATCTATCGATAATAAATCAATTCTGACCATGCAAAAAAAAAAAAAAA
AAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP09339.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
ect.b 2372 ect.b 267..2355 1..2087 10390 99.9 Plus
ect-RA 2126 ect-RA 21..2109 1..2087 10390 99.9 Plus
ect.c 2354 ect.c 411..2337 163..2087 9580 99.8 Plus
ect.c 2354 ect.c 1..157 8..164 785 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 10182419..10183037 1773..1155 2990 98.9 Minus
chr3L 24539361 chr3L 10182035..10182355 2087..1768 1495 98.4 Minus
chr3L 24539361 chr3L 10187208..10187477 822..553 1305 98.9 Minus
chr3L 24539361 chr3L 10183332..10183567 1155..920 1180 100 Minus
chr3L 24539361 chr3L 10187975..10188213 400..162 1180 99.6 Minus
chr3L 24539361 chr3L 10187586..10187739 553..400 770 100 Minus
chr3L 24539361 chr3L 10193435..10193588 164..1 635 93.9 Minus
chr3L 24539361 chr3L 10186660..10186764 923..819 525 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10190659..10191277 1773..1155 3095 100 Minus
3L 28110227 3L 10190274..10190595 2087..1768 1545 99.4 Minus
3L 28110227 3L 10195441..10195710 822..553 1350 100 Minus
3L 28110227 3L 10196208..10196446 400..162 1195 100 Minus
3L 28110227 3L 10191572..10191807 1155..920 1180 100 Minus
3L 28110227 3L 10201658..10201821 164..1 820 100 Minus
3L 28110227 3L 10195819..10195972 553..400 770 100 Minus
3L 28110227 3L 10194893..10194997 923..819 525 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 10183759..10184377 1773..1155 3095 100 Minus
3L 28103327 3L 10183374..10183695 2087..1768 1555 99.3 Minus
3L 28103327 3L 10188541..10188810 822..553 1350 100 Minus
3L 28103327 3L 10189308..10189546 400..162 1195 100 Minus
3L 28103327 3L 10184672..10184907 1155..920 1180 100 Minus
3L 28103327 3L 10194758..10194921 164..1 820 100 Minus
3L 28103327 3L 10188919..10189072 553..400 770 100 Minus
3L 28103327 3L 10187993..10188097 923..819 525 100 Minus
3L 28103327 3L 10189348..10189391 519..476 145 88.6 Minus
Blast to na_te.dros performed on 2019-03-16 20:49:38 has no hits.

LP09339.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:50:48 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 10182422..10183037 1155..1770 98 <- Minus
chr3L 10183333..10183567 920..1154 100 <- Minus
chr3L 10186664..10186703 880..919 100 == Minus
chr3L 10187208..10187476 554..822 98 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:50:29 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
ect-RB 1..1746 175..1920 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:05 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
ect-RB 1..1746 175..1920 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:28:58 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
ect-RA 1..1746 175..1920 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:02 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
ect-RB 1..1746 175..1920 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:55:41 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
ect-RA 1..1746 175..1920 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:50:28 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
ect-RA 14..2100 1..2085 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:05 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
ect-RA 14..2100 1..2085 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:58 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
ect-RA 17..2103 1..2085 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:02 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
ect-RA 14..2100 1..2085 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:41 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
ect-RA 17..2103 1..2085 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:50:48 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10194897..10194995 821..919 100 <- Minus
3L 10201658..10201821 1..164 100   Minus
3L 10195443..10195709 554..820 100 <- Minus
3L 10195819..10195971 401..553 100 <- Minus
3L 10196208..10196443 165..400 100 <- Minus
3L 10191573..10191807 920..1154 100 <- Minus
3L 10190276..10190592 1771..2085 99 <- Minus
3L 10190662..10191277 1155..1770 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:50:48 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10194897..10194995 821..919 100 <- Minus
3L 10201658..10201821 1..164 100   Minus
3L 10195443..10195709 554..820 100 <- Minus
3L 10195819..10195971 401..553 100 <- Minus
3L 10196208..10196443 165..400 100 <- Minus
3L 10191573..10191807 920..1154 100 <- Minus
3L 10190276..10190592 1771..2085 99 <- Minus
3L 10190662..10191277 1155..1770 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:50:48 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10194897..10194995 821..919 100 <- Minus
3L 10201658..10201821 1..164 100   Minus
3L 10195443..10195709 554..820 100 <- Minus
3L 10195819..10195971 401..553 100 <- Minus
3L 10196208..10196443 165..400 100 <- Minus
3L 10191573..10191807 920..1154 100 <- Minus
3L 10190276..10190592 1771..2085 99 <- Minus
3L 10190662..10191277 1155..1770 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:58 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10183376..10183692 1771..2085 99 <- Minus
arm_3L 10183762..10184377 1155..1770 100 <- Minus
arm_3L 10184673..10184907 920..1154 100 <- Minus
arm_3L 10187997..10188095 821..919 100 <- Minus
arm_3L 10188543..10188809 554..820 100 <- Minus
arm_3L 10188919..10189071 401..553 100 <- Minus
arm_3L 10189308..10189543 165..400 100 <- Minus
arm_3L 10194758..10194921 1..164 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:07 Download gff for LP09339.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10183376..10183692 1771..2085 99 <- Minus
3L 10183762..10184377 1155..1770 100 <- Minus
3L 10184673..10184907 920..1154 100 <- Minus
3L 10187997..10188095 821..919 100 <- Minus
3L 10188543..10188809 554..820 100 <- Minus
3L 10188919..10189071 401..553 100 <- Minus
3L 10189308..10189543 165..400 100 <- Minus
3L 10194758..10194921 1..164 100   Minus

LP09339.pep Sequence

Translation from 174 to 1919

> LP09339.pep
MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQTVNNEVAPAVAPAS
DDDDDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDEDEEDDTPQGQAAPAA
TASDDDEEEDDDDDDYLDRLFDDILGDDEDEDDDDETPAATAQQSAVAAA
PAQTLDEVAPAAASSVSAGISDGVDLPAESGNAAEVLAAGNAADESVSAA
VAPAQNAAASSSNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREARD
LKNNVIDMSTDAFQARHNHFIDAIFSRINRIVSENYDPYVVNLTGRSVLP
NAASGSNVKAANKKQSTSSKVGGHKKLKNTRSEPRSVNSNQEAREAAVKL
QEQLTQLQSELAIKAVEKRPSPTSPATESESDSGSPKAETRTVSGSKTGQ
KKSSNKQNTKKASGLKSGNYNQPAGASKAGASSAGAVEKLQKAEGRLSGL
ASLKRVGNVKVISDAEGRNSTIKAKFTLGPLVLRVEKSFKKGSVRSVKSA
TARTNEMMGRIKFSVLDDRATLMSIKVQQPKQVEVESKDNHDRTREFVWR
RTPKIAKLVNEKLKLAAESLFAPQGVEVVRL*

LP09339.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23838-PA 602 GF23838-PA 1..602 1..581 1764 81.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13981-PA 586 GG13981-PA 1..586 1..581 2865 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16557-PA 598 GH16557-PA 156..598 155..581 1276 67.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
ect-PB 581 CG6611-PB 1..581 1..581 2891 100 Plus
ect-PA 581 CG6611-PA 1..581 1..581 2891 100 Plus
ect-PF 589 CG6611-PF 1..589 1..581 2872 98.6 Plus
ect-PE 548 CG6611-PE 1..548 1..581 2674 94.3 Plus
ect-PD 280 CG6611-PD 1..253 1..253 1263 98.8 Plus
l(2)01289-PG 1191 CG9432-PG 708..956 27..261 214 29 Plus
l(2)01289-PM 1193 CG9432-PM 708..956 27..261 214 29 Plus
CG15239-PA 493 CG15239-PA 275..433 46..216 204 35.7 Plus
Asph-PB 382 CG8421-PB 101..300 34..235 184 27 Plus
Asph-PJ 400 CG8421-PJ 119..318 34..235 184 27 Plus
Asph-PG 557 CG8421-PG 101..300 34..235 184 27 Plus
Asph-PI 575 CG8421-PI 119..318 34..235 184 27 Plus
Asph-PA 785 CG8421-PA 101..300 34..235 184 27 Plus
Asph-PH 803 CG8421-PH 119..318 34..235 184 27 Plus
Asph-PL 991 CG8421-PL 101..298 34..235 184 26.4 Plus
CG9297-PA 930 CG9297-PA 63..434 48..389 183 23.7 Plus
l(2)01289-PM 1193 CG9432-PM 886..1014 50..182 181 30.6 Plus
hang-PA 1901 CG32575-PA 1618..1833 28..263 180 27.2 Plus
hang-PD 1959 CG32575-PD 1622..1837 28..263 180 27.2 Plus
hang-PC 2223 CG32575-PC 1886..2101 28..263 180 27.2 Plus
Asph-PK 556 CG8421-PK 101..299 34..235 179 28.8 Plus
l(2)01289-PG 1191 CG9432-PG 886..1008 50..172 178 30.6 Plus
CG8184-PF 5127 CG8184-PF 2738..2967 47..323 177 25.1 Plus
l(2)01289-PG 1191 CG9432-PG 838..949 26..136 176 32.2 Plus
l(2)01289-PM 1193 CG9432-PM 838..949 26..136 176 32.2 Plus
l(2)01289-PG 1191 CG9432-PG 871..961 51..137 170 38.5 Plus
CG8184-PG 5101 CG8184-PG 2711..2941 50..323 170 25.2 Plus
CG8184-PC 5145 CG8184-PC 2753..2985 50..323 170 24.5 Plus
CG8184-PB 5146 CG8184-PB 2754..2986 50..323 170 24.5 Plus
CG8184-PD 5150 CG8184-PD 2758..2990 50..323 170 24.5 Plus
CG8184-PH 5151 CG8184-PH 2759..2991 50..323 170 24.5 Plus
CG8184-PE 5116 CG8184-PE 2718..2956 39..323 167 24.2 Plus
CG13096-PB 681 CG13096-PB 573..679 12..136 166 31.7 Plus
CG13096-PA 681 CG13096-PA 573..679 12..136 166 31.7 Plus
CG8108-PA 919 CG8108-PA 246..458 16..249 161 24.5 Plus
CG8108-PB 919 CG8108-PB 246..458 16..249 161 24.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13848-PA 589 GI13848-PA 1..589 1..581 1438 74.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11751-PA 567 GL11751-PA 1..567 1..581 1607 71.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19722-PA 609 GA19722-PA 1..609 1..581 1636 75.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24817-PA 467 GM24817-PA 133..467 247..581 1710 97.6 Plus
Dsec\GM24817-PA 467 GM24817-PA 1..102 1..103 251 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12869-PA 581 GD12869-PA 1..581 1..581 2935 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11712-PA 589 GJ11712-PA 1..589 1..581 1463 71.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24084-PA 675 GK24084-PA 1..624 1..581 1377 68.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20279-PA 588 GE20279-PA 1..588 1..581 2850 95.4 Plus

LP09339.hyp Sequence

Translation from 174 to 1919

> LP09339.hyp
MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQTVNNEVAPAVAPAS
DDDDDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDEDEEDDTPQGQAAPAA
TASDDDEEEDDDDDDYLDRLFDDILGDDEDEDDDDETPAATAQQSAVAAA
PAQTLDEVAPAAASSVSAGISDGVDLPAESGNAAEVLAAGNAADESVSAA
VAPAQNAAASSSNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREARD
LKNNVIDMSTDAFQARHNHFIDAIFSRINRIVSENYDPYVVNLTGRSVLP
NAASGSNVKAANKKQSTSSKVGGHKKLKNTRSEPRSVNSNQEAREAAVKL
QEQLTQLQSELAIKAVEKRPSPTSPATESESDSGSPKAETRTVSGSKTGQ
KKSSNKQNTKKASGLKSGNYNQPAGASKAGASSAGAVEKLQKAEGRLSGL
ASLKRVGNVKVISDAEGRNSTIKAKFTLGPLVLRVEKSFKKGSVRSVKSA
TARTNEMMGRIKFSVLDDRATLMSIKVQQPKQVEVESKDNHDRTREFVWR
RTPKIAKLVNEKLKLAAESLFAPQGVEVVRL*

LP09339.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
ect-PB 581 CG6611-PB 1..581 1..581 2891 100 Plus
ect-PA 581 CG6611-PA 1..581 1..581 2891 100 Plus
ect-PF 589 CG6611-PF 1..589 1..581 2872 98.6 Plus
ect-PE 548 CG6611-PE 1..548 1..581 2674 94.3 Plus
ect-PD 280 CG6611-PD 1..253 1..253 1263 98.8 Plus