Clone LP09416 Report

Search the DGRC for LP09416

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:94
Well:16
Vector:pOT2
Associated Gene/Transcriptkermit-RA
Protein status:LP09416.pep: gold
Preliminary Size:2104
Sequenced Size:2044

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11546 2001-09-19 Blastp of sequenced clone
CG11546 2003-01-01 Sim4 clustering to Release 3
kermit 2008-04-29 Release 5.5 accounting
kermit 2008-08-15 Release 5.9 accounting
kermit 2008-12-18 5.12 accounting

Clone Sequence Records

LP09416.complete Sequence

2044 bp (2044 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060451

> LP09416.complete
CGAGGTCCGAATTTTCGAGCGCAGCGCGGCCACAATTTTCCGGGCGTTAG
TTAACCGAGACGACTAGTTTAATTAGCGGAATTGTGCGACGACGTCGTGG
TTGAAATTCAATTTGAACGCCCAGGCGGTAGATCGGTAAAATCGCGACAT
CAAAGCACGAGAGTGAGTGAAAAGAGAACCCTGGAAAGTGGTCAATGTGT
GTGTATTTGGCGAGCAGTGGCGGAGCACTGAAAAAACCAGTTAGCTGGCA
GTGAAAGAGATTCAATAACGTGTTGGTGGGCAAAAGAAGAACAAATTGTT
TCGAGTGTGCGAGGCGACGACGACGACATCCAACTGGTCCGGTACGAAGA
AGTCCGCTTTCCTCGCTCATTAGCGGCGCTTTCCTCGGGCCCACGATCTG
GAAGTCTGGAAATCGGCGATACCTAAAACCGGGCCATAGCCACCACTATC
ATTATCAACAAATTGATATACATATGCAATTGCAGCAGCGCGTCATCAGC
ACAGCGCCCATCGCCTAGCAGATCAGTAACAGGATCAAGAGCAAGGTAAC
CGTCCAACACTACATGTCCTAAAACTAGGAACGGTTCTCCAGCCCAAGGA
CTTATCGAGGACACTATCCAATCCCAGTCAATCATGCCGCTCTTCACAAG
AAAATCACCCAAGCAAGGACCCACCTCGGATGGGGGCTCCCAGTTCGGCA
GTCGCTCCTCCATGAACTCCGGGTCCTCCCAGGGCAGCCACATTAGCAAT
AACAACAACAACAGCATTCCGGAGAAAACAAAGCCCCCGCTGGTCTTCCA
CTGCCAACTGGCCCACGGCAGTCCCACCGGTCTAATCCACGACTTCTCCA
GCGTTCGAGAGCTGTACCAGAAGATTGCCGAGTGCTTTGACATATCCGAG
AAGGACATTCTCTTCTGCACCCTCAACTCGCACAAGGTGGACATGACGCG
TCTGCTGGGCGGGCAGATCGGGCTGGACGACTTTATATTCGCCCATCGCA
AAGGTCGGCCCAAGGAGATCGAGATTGTGAAGTCGCAGGATGCCCTCGGA
CTGACGATCACCGACAACGGGGCCGGCTACGCCTTCATAAAGCGGATCAA
GGAGGACTCGATCATCGATCGCATCGAGCACATCAGCGTTGGCGATCACA
TCGAGAAGCTCAACGGCCAGAATATGGTGGGCAAGCGGCACTACGAGGTG
GCGCGCATGCTGAAGGACATTGCCACCGGGGAGACCTTCACCCTGCGCCT
GGTGGAGCCAGTGCGAAGCGGCTTCCAGGGCATCGGACCGCGCAGCCAGT
CAAGGGCGTCGGGCTCGGCCGGAGGAAAGAACTATGGCAGCGGCAAGGAG
ACGCTGCGGTTCAAGGCCAATGGCAATGCCCAGATCGAGCCGCAGTTCGA
TGAGGCGACTGTGGCCGGTATCGAGGCCATTAATAACCTGCTGGAGTCCT
TCATGGGCATCAACGACACGGAGCTGGCGTCCCAGATCTGGGACTTGGGC
GACCAAAAGTCCAACTCAATGGACTTCGCCGAGGCCATCGACAACTCGGA
CCTAGAGTCGTTCGGCTTCACGGATGACTTCATCATCGAGCTGTGGGGTG
CCATAACGGATGCCCGGCGCAAGTCCACGACCAGTCCCAAGTAATTGGGT
AACCATACCAGACGCTTTTCCAATAAATGAGGAGTGCTATTATCTACTAT
TTGAGAACGTTTTGTTTTAGAGCCTAGTTTTATTTACCACATATCATGCT
ACAATCCCATATACAAACATATGTCGTCTGCCTTTGCCAATTGTTTAGTT
ATTTGTATTCTTCACGGTAACCTATTTATTATATATATATTTTTTGCGTT
CAGATGAACGGGGGGATGTGCCGAGGCATCCCTACTATGCATATATTTTT
GGTACAATTTGTTTGATGTACATACATACATACGTATAACTATACTTCTT
TAGTTTTATCCTTTAAACGATACAAATATATTTAAATTATTTAAATCGGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP09416.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
kermit-RA 2153 kermit-RA 153..2152 1..2000 10000 100 Plus
kermit-RC 1742 kermit-RC 262..1741 521..2000 7400 100 Plus
kermit-RB 1794 kermit-RB 315..1793 522..2000 7395 100 Plus
kermit-RB 1794 kermit-RB 153..314 1..162 810 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4034425..4035905 1999..519 7405 100 Minus
chr2R 21145070 chr2R 4043580..4044100 521..1 2575 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8146917..8148398 2000..519 7410 100 Minus
2R 25286936 2R 8156055..8156575 521..1 2605 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8148116..8149597 2000..519 7410 100 Minus
2R 25260384 2R 8157254..8157774 521..1 2605 100 Minus
Blast to na_te.dros performed 2019-03-15 16:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 411..487 1922..1999 117 62.8 Plus

LP09416.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:15:50 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4034452..4035902 522..1972 98 <- Minus
chr2R 4043580..4044100 1..521 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:39:48 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
kermit-RD 1..1011 634..1644 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:58:28 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
kermit-RD 1..1011 634..1644 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:57:32 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
kermit-RD 1..1011 634..1644 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:28:03 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
kermit-RD 1..1011 634..1644 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:31:06 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
kermit-RD 1..1011 634..1644 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:45:17 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
kermit-RA 76..2074 1..1999 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:58:28 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
kermit-RA 47..2045 1..1999 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:32 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
kermit-RA 80..2078 1..1999 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:28:03 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
kermit-RA 76..2074 1..1999 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:31:06 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
kermit-RA 80..2078 1..1999 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:50 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8146918..8148395 522..1999 100 <- Minus
2R 8156055..8156575 1..521 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:50 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8146918..8148395 522..1999 100 <- Minus
2R 8156055..8156575 1..521 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:50 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8146918..8148395 522..1999 100 <- Minus
2R 8156055..8156575 1..521 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:32 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4034423..4035900 522..1999 100 <- Minus
arm_2R 4043560..4044080 1..521 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:06 Download gff for LP09416.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8148117..8149594 522..1999 100 <- Minus
2R 8157254..8157774 1..521 100   Minus

LP09416.pep Sequence

Translation from 633 to 1643

> LP09416.pep
MPLFTRKSPKQGPTSDGGSQFGSRSSMNSGSSQGSHISNNNNNSIPEKTK
PPLVFHCQLAHGSPTGLIHDFSSVRELYQKIAECFDISEKDILFCTLNSH
KVDMTRLLGGQIGLDDFIFAHRKGRPKEIEIVKSQDALGLTITDNGAGYA
FIKRIKEDSIIDRIEHISVGDHIEKLNGQNMVGKRHYEVARMLKDIATGE
TFTLRLVEPVRSGFQGIGPRSQSRASGSAGGKNYGSGKETLRFKANGNAQ
IEPQFDEATVAGIEAINNLLESFMGINDTELASQIWDLGDQKSNSMDFAE
AIDNSDLESFGFTDDFIIELWGAITDARRKSTTSPK*

LP09416.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11206-PA 341 GF11206-PA 1..341 1..336 1592 91.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10670-PA 340 GG10670-PA 1..340 1..336 1765 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19980-PA 343 GH19980-PA 1..342 1..331 1355 79.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
kermit-PE 336 CG11546-PE 1..336 1..336 1739 100 Plus
kermit-PC 336 CG11546-PC 1..336 1..336 1739 100 Plus
kermit-PD 336 CG11546-PD 1..336 1..336 1739 100 Plus
kermit-PB 336 CG11546-PB 1..336 1..336 1739 100 Plus
kermit-PA 336 CG11546-PA 1..336 1..336 1739 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20266-PA 335 GI20266-PA 49..333 50..330 1398 92.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17375-PA 343 GL17375-PA 1..343 1..336 1523 86.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11060-PA 343 GA11060-PA 1..343 1..336 1523 86.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20716-PA 336 GM20716-PA 1..336 1..336 1785 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20219-PA 343 GJ20219-PA 1..339 1..333 1368 80.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23041-PA 352 GK23041-PA 1..342 1..333 1476 82.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23259-PA 336 GE23259-PA 1..336 1..336 1779 99.4 Plus

LP09416.hyp Sequence

Translation from 633 to 1643

> LP09416.hyp
MPLFTRKSPKQGPTSDGGSQFGSRSSMNSGSSQGSHISNNNNNSIPEKTK
PPLVFHCQLAHGSPTGLIHDFSSVRELYQKIAECFDISEKDILFCTLNSH
KVDMTRLLGGQIGLDDFIFAHRKGRPKEIEIVKSQDALGLTITDNGAGYA
FIKRIKEDSIIDRIEHISVGDHIEKLNGQNMVGKRHYEVARMLKDIATGE
TFTLRLVEPVRSGFQGIGPRSQSRASGSAGGKNYGSGKETLRFKANGNAQ
IEPQFDEATVAGIEAINNLLESFMGINDTELASQIWDLGDQKSNSMDFAE
AIDNSDLESFGFTDDFIIELWGAITDARRKSTTSPK*

LP09416.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
kermit-PE 336 CG11546-PE 1..336 1..336 1739 100 Plus
kermit-PC 336 CG11546-PC 1..336 1..336 1739 100 Plus
kermit-PD 336 CG11546-PD 1..336 1..336 1739 100 Plus
kermit-PB 336 CG11546-PB 1..336 1..336 1739 100 Plus
kermit-PA 336 CG11546-PA 1..336 1..336 1739 100 Plus