Clone LP09580 Report

Search the DGRC for LP09580

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:95
Well:80
Vector:pOT2
Associated Gene/TranscriptGal-RA
Protein status:LP09580.pep: gold
Preliminary Size:2166
Sequenced Size:2328

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9092 2002-01-01 Sim4 clustering to Release 2
CG9092 2002-05-18 Blastp of sequenced clone
CG9092 2003-01-01 Sim4 clustering to Release 3
Gal 2008-04-29 Release 5.5 accounting
Gal 2008-08-15 Release 5.9 accounting
Gal 2008-12-18 5.12 accounting

Clone Sequence Records

LP09580.complete Sequence

2328 bp (2328 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119076

> LP09580.complete
ATTCTGGTCCACCCATCCGAGTGGAGCGAGCTTTCAAGCAAGCTTATATC
GCTAGCGATACATTTGTGGTGTTTCTCCAAGCTCCCAAGTCGGCTCTTCA
ATATGAGCGGTTGTCGTCGCAATCGAAAGCTGACGATGGCCGTAAGTGGA
TGTCTGATAATTGCTGTGATGGCCCTCACCGTTGGGCTTTGTGTGGGACT
GAGCGGTGACACCGACGCCCCCGAGGAACAGCCAAGGTTTACGATCGACC
ATGAGGCCAACACCTTCATGCTGGATGGCCAGCCCTTCCGGTACGTCTCT
GGATCGTTTCACTATTTCCGCGCTGTACCCGAGTCCTGGCGAAGTCGGTT
GCGCACCATGCGAGCATCTGGTCTTAATGCTCTGGATACCTATGTTGAAT
GGTCGCTCCACAATCCGCACGATGGAGAATACAACTGGGAGGGCATTGCG
GATGTTGTCAAGTTTCTGGAGATTGCTCAGGAGGAAGACTTCTACATCAT
TCTCCGCCCAGGTCCCTACATTTGTGCTGAGCGAGATAATGGTGGTCTTC
CTCACTGGTTGTTTACCAAATACCCGTCCATCAAGATGCGGACCAATGAC
CCCAACTACATCTCAGAGGTGGGCAAGTGGTATGCGGAGCTGATGCCACG
CCTCCAGCACCTGTTCGTAGGCAACGGCGGCAAGATCATAATGGTGCAGG
TGGAGAACGAGTACGGTGACTATGCCTGCGATCACGACTACCTCAACTGG
CTGCGAGACGAGACGGAGAAGTATGTGTCCGGCAAGGCGCTGCTCTTCAC
GGTGGACATACCCAACGAGAAGATGAGCTGTGGAAAGATCGAGAACGTGT
TCGCCACCACTGACTTCGGCATCGATCGCATCAATGAGATTGACAAAATC
TGGGCAATGCTGCGTGCCCTGCAGCCGACTGGCCCACTGGTCAACTCGGA
GTTCTATCCCGGCTGGCTAACGCATTGGCAGGAGCAGAACCAAAGGCGTG
ATGGCCAGGAGGTAGCCAATGCACTAAGGACAATTCTGAGCTACAACGCT
AGTGTTAACCTCTATATGTTCTTTGGCGGCACAAACTTTGGGTTCACTGC
TGGTGCCAACTATAATCTGGACGGTGGCATCGGATATGCGGCAGACATAA
CCAGCTACGACTACGATGCAGTGATGGACGAGGCCGGTGGCGTCACCACT
AAGTACAACCTTGTCAAGGCTGTGATTGGAGAATTCCTTCCGCTGCCGGA
AATCACCTTGAATCCCGCTAAGCGTCTGGCCTACGGAAGGGTGGAGCTGA
CACCCAAGCTGACACTGCTCTCGACGGAAGGACGTGCTGCGCTCTCCAAG
GGTGATCCCGTCGAATCGATCAAGCCGAAAACCTTCGAGGAACTAGACTT
GTACTCGGGCCTCGTCCTGTACGAGACCGAGCTGCCCAGCATGGATCTAG
ACCCAGCCTTGCTGAAAATAGATCAAATTAACGATCGAGCACACGTATTC
GTAGACCAGGAACTGGTGGGCACACTCTCCCGCGAGGCACAGATCTACTC
GCTGCCGCTTAGCAAGGGTTGGGGCAGCACACTGCAGCTGCTGGTGGAGA
ACCAAGGACGCGTCAACTTCTACATCTCCAACGACACGAAGGGCATCTTT
GGTGAGGTGAGCCTGCAGCTGCACAATGGTGGTTACCTCCCGCTGGAGAA
CTGGCGGAGCACCGCTTTCCCGCTGGAGCAATCCGCCGTCGAGCTCTGGC
GGCGCGAACACACTGACGAGAAGGCCTTGGACCCGTTGCTGGCAAGGCAA
CGCATTCTTCGAAACGGACCAATACTCTACACTGGCAGCCTGACAGTGAC
GGAGGTGGGCGACACCTATTTGAACATGGCCGGTTGGGGCAAGGGCGTGG
CCTATGTGAACGGTTTTAATTTGGGACGCTACTGGCCTGTGGCAGGTCCA
CAGGTCACCTTATATGTGCCCAACGAGATACTGAAAGTGGGTGAAAACTC
TCTGGTGATCCTTGAGTACCAACGAGCGAATAAGACAGCAACTGGCGAGG
ATCTACCTGCAGTGCAGTTCGACGCAGTTGCTCAGCTGGACGGAGAGTCT
GGTGATGTTCCACTTAAATGATGAGCCTTGTATGCATTGTTATTCCGTAT
TTCTTTATTAGAAGCGTTTTTGATTGATACTTGTGTCAACAACCTTCGTT
AAGCTTTATTATAAATTTTCTAACTCTTATAAATCTATGTTTATATACGC
CTTAATAAATGCTGTTGATCTGTGCTTGACTGACTCTTATCGATCTCCAG
CTTATTTTCAAAAAAAAAAAAAAAAAAA

LP09580.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
Gal-RA 2396 Gal-RA 88..2396 1..2309 11545 100 Plus
Gal.c 2683 Gal.c 375..2683 1..2309 11545 100 Plus
Gal.a 2303 Gal.a 1..2303 1..2309 11430 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6002625..6003907 2309..1027 6415 100 Minus
chr2L 23010047 chr2L 6004264..6004603 880..541 1700 100 Minus
chr2L 23010047 chr2L 6005617..6005842 226..1 1130 100 Minus
chr2L 23010047 chr2L 6004955..6005120 389..224 830 100 Minus
chr2L 23010047 chr2L 6004736..6004887 541..390 760 100 Minus
chr2L 23010047 chr2L 6004056..6004204 1029..881 745 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6003572..6004856 2311..1027 6425 100 Minus
2L 23513712 2L 6005213..6005552 880..541 1700 100 Minus
2L 23513712 2L 6006566..6006791 226..1 1130 100 Minus
2L 23513712 2L 6005904..6006069 389..224 830 100 Minus
2L 23513712 2L 6005685..6005836 541..390 760 100 Minus
2L 23513712 2L 6005005..6005153 1029..881 745 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6003572..6004856 2311..1027 6425 100 Minus
2L 23513712 2L 6005213..6005552 880..541 1700 100 Minus
2L 23513712 2L 6006566..6006791 226..1 1130 100 Minus
2L 23513712 2L 6005904..6006069 389..224 830 100 Minus
2L 23513712 2L 6005685..6005836 541..390 760 100 Minus
2L 23513712 2L 6005005..6005153 1029..881 745 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:37:12 has no hits.

LP09580.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:37:51 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6005618..6005842 1..225 100   Minus
chr2L 6002625..6003905 1029..2309 100 <- Minus
chr2L 6004057..6004204 881..1028 100 <- Minus
chr2L 6004264..6004603 541..880 100 <- Minus
chr2L 6004737..6004887 390..540 100 <- Minus
chr2L 6004955..6005118 226..389 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:39:55 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 1..2019 103..2121 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:41:58 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 1..2019 103..2121 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:37:02 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 1..2019 103..2121 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:34:04 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 1..2019 103..2121 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:46:33 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 1..2019 103..2121 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:16:09 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 1..2309 1..2309 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:41:58 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 1..2309 1..2309 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:02 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 37..2345 1..2309 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:34:04 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 1..2309 1..2309 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:46:33 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 37..2345 1..2309 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:51 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6005686..6005836 390..540 100 <- Minus
2L 6005904..6006067 226..389 100 <- Minus
2L 6006567..6006791 1..225 100   Minus
2L 6003574..6004854 1029..2309 100 <- Minus
2L 6005006..6005153 881..1028 100 <- Minus
2L 6005213..6005552 541..880 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:51 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6005686..6005836 390..540 100 <- Minus
2L 6005904..6006067 226..389 100 <- Minus
2L 6006567..6006791 1..225 100   Minus
2L 6003574..6004854 1029..2309 100 <- Minus
2L 6005006..6005153 881..1028 100 <- Minus
2L 6005213..6005552 541..880 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:51 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6005686..6005836 390..540 100 <- Minus
2L 6005904..6006067 226..389 100 <- Minus
2L 6006567..6006791 1..225 100   Minus
2L 6003574..6004854 1029..2309 100 <- Minus
2L 6005006..6005153 881..1028 100 <- Minus
2L 6005213..6005552 541..880 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:02 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6005686..6005836 390..540 100 <- Minus
arm_2L 6005904..6006067 226..389 100 <- Minus
arm_2L 6006567..6006791 1..225 100   Minus
arm_2L 6003574..6004854 1029..2309 100 <- Minus
arm_2L 6005006..6005153 881..1028 100 <- Minus
arm_2L 6005213..6005552 541..880 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:06:24 Download gff for LP09580.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6005006..6005153 881..1028 100 <- Minus
2L 6005213..6005552 541..880 100 <- Minus
2L 6005686..6005836 390..540 100 <- Minus
2L 6005904..6006067 226..389 100 <- Minus
2L 6006567..6006791 1..225 100   Minus
2L 6003574..6004854 1029..2309 100 <- Minus

LP09580.hyp Sequence

Translation from 0 to 2120

> LP09580.hyp
ILVHPSEWSELSSKLISLAIHLWCFSKLPSRLFNMSGCRRNRKLTMAVSG
CLIIAVMALTVGLCVGLSGDTDAPEEQPRFTIDHEANTFMLDGQPFRYVS
GSFHYFRAVPESWRSRLRTMRASGLNALDTYVEWSLHNPHDGEYNWEGIA
DVVKFLEIAQEEDFYIILRPGPYICAERDNGGLPHWLFTKYPSIKMRTND
PNYISEVGKWYAELMPRLQHLFVGNGGKIIMVQVENEYGDYACDHDYLNW
LRDETEKYVSGKALLFTVDIPNEKMSCGKIENVFATTDFGIDRINEIDKI
WAMLRALQPTGPLVNSEFYPGWLTHWQEQNQRRDGQEVANALRTILSYNA
SVNLYMFFGGTNFGFTAGANYNLDGGIGYAADITSYDYDAVMDEAGGVTT
KYNLVKAVIGEFLPLPEITLNPAKRLAYGRVELTPKLTLLSTEGRAALSK
GDPVESIKPKTFEELDLYSGLVLYETELPSMDLDPALLKIDQINDRAHVF
VDQELVGTLSREAQIYSLPLSKGWGSTLQLLVENQGRVNFYISNDTKGIF
GEVSLQLHNGGYLPLENWRSTAFPLEQSAVELWRREHTDEKALDPLLARQ
RILRNGPILYTGSLTVTEVGDTYLNMAGWGKGVAYVNGFNLGRYWPVAGP
QVTLYVPNEILKVGENSLVILEYQRANKTATGEDLPAVQFDAVAQLDGES
GDVPLK*

LP09580.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
Gal-PA 672 CG9092-PA 1..672 35..706 3561 100 Plus
Gal-PB 670 CG9092-PB 1..670 35..706 3538 99.7 Plus
Ect3-PA 637 CG3132-PA 1..617 57..675 1624 52 Plus

LP09580.pep Sequence

Translation from 102 to 2120

> LP09580.pep
MSGCRRNRKLTMAVSGCLIIAVMALTVGLCVGLSGDTDAPEEQPRFTIDH
EANTFMLDGQPFRYVSGSFHYFRAVPESWRSRLRTMRASGLNALDTYVEW
SLHNPHDGEYNWEGIADVVKFLEIAQEEDFYIILRPGPYICAERDNGGLP
HWLFTKYPSIKMRTNDPNYISEVGKWYAELMPRLQHLFVGNGGKIIMVQV
ENEYGDYACDHDYLNWLRDETEKYVSGKALLFTVDIPNEKMSCGKIENVF
ATTDFGIDRINEIDKIWAMLRALQPTGPLVNSEFYPGWLTHWQEQNQRRD
GQEVANALRTILSYNASVNLYMFFGGTNFGFTAGANYNLDGGIGYAADIT
SYDYDAVMDEAGGVTTKYNLVKAVIGEFLPLPEITLNPAKRLAYGRVELT
PKLTLLSTEGRAALSKGDPVESIKPKTFEELDLYSGLVLYETELPSMDLD
PALLKIDQINDRAHVFVDQELVGTLSREAQIYSLPLSKGWGSTLQLLVEN
QGRVNFYISNDTKGIFGEVSLQLHNGGYLPLENWRSTAFPLEQSAVELWR
REHTDEKALDPLLARQRILRNGPILYTGSLTVTEVGDTYLNMAGWGKGVA
YVNGFNLGRYWPVAGPQVTLYVPNEILKVGENSLVILEYQRANKTATGED
LPAVQFDAVAQLDGESGDVPLK*

LP09580.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14288-PA 661 GF14288-PA 1..661 12..672 3219 89.3 Plus
Dana\GF17225-PA 637 GF17225-PA 24..618 46..642 1609 53 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24263-PA 672 GG24263-PA 1..672 1..672 3422 95.7 Plus
Dere\GG18564-PA 637 GG18564-PA 17..624 39..651 1644 52.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10713-PA 680 GH10713-PA 11..680 3..672 2934 79.8 Plus
Dgri\GH23545-PA 639 GH23545-PA 26..621 46..642 1588 53 Plus
Dgri\GH25263-PA 619 GH25263-PA 26..601 46..642 1496 50.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Gal-PA 672 CG9092-PA 1..672 1..672 3561 100 Plus
Gal-PB 670 CG9092-PB 1..670 1..672 3538 99.7 Plus
Ect3-PA 637 CG3132-PA 1..617 23..641 1624 52 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11295-PA 678 GI11295-PA 7..676 3..669 2897 79.1 Plus
Dmoj\GI23552-PA 641 GI23552-PA 6..621 16..642 1620 51.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19091-PA 672 GL19091-PA 3..672 4..672 3188 87.8 Plus
Dper\GL22259-PA 640 GL22259-PA 4..621 16..642 1606 51.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25341-PA 672 GA25341-PA 3..672 4..672 3202 87.9 Plus
Dpse\GA16177-PA 640 GA16177-PA 4..621 16..642 1602 51.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17976-PA 672 GM17976-PA 1..672 1..672 3541 98.1 Plus
Dsec\GM23992-PA 622 GM23992-PA 24..609 46..651 1557 51.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18795-PA 636 GD18795-PA 23..623 46..651 1638 53.2 Plus
Dsim\GD22612-PA 69 GD22612-PA 1..69 1..69 357 92.8 Plus
Dsim\GD22613-PA 81 GD22613-PA 1..62 86..147 334 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12525-PA 684 GJ12525-PA 13..681 5..668 2907 80 Plus
Dvir\GJ23531-PA 640 GJ23531-PA 7..621 19..642 1569 51.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15404-PA 673 GK15404-PA 4..671 3..669 3021 83.1 Plus
Dwil\GK11429-PA 640 GK11429-PA 30..621 46..642 1613 53.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18961-PA 672 GE18961-PA 1..672 1..672 3498 96.9 Plus
Dyak\GE26154-PA 637 GE26154-PA 24..624 46..651 1632 53 Plus