Clone LP09584 Report

Search the DGRC for LP09584

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:95
Well:84
Vector:pOT2
Associated Gene/TranscriptTsp29Fb-RA
Protein status:LP09584.pep: gold
Preliminary Size:996
Sequenced Size:1141

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9496 2002-01-01 Sim4 clustering to Release 2
CG9496 2002-06-13 Blastp of sequenced clone
CG9496 2003-01-01 Sim4 clustering to Release 3
Tsp29Fb 2008-04-29 Release 5.5 accounting
Tsp29Fb 2008-08-15 Release 5.9 accounting
Tsp29Fb 2008-12-18 5.12 accounting

Clone Sequence Records

LP09584.complete Sequence

1141 bp (1141 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122216

> LP09584.complete
ACCAGCAAAAGTTAAACTGACATCCAAGCGAGACTGCGAACAGCAAAATG
TCGAATAGGGAACTGCAACTGAATTCGGGCATGAAGTGCGCCAAGTACAT
GCTCATCATCGTGAGCTTCATGTTTGCGCTGACCGCCATCCTCCTGATTA
TGGTTGGAACTACGATCCAGACCATCTTCGGCGACTTCAGCCTCTTCATC
GATGGACACTTCTCGTCGCCACCGGCACTCCTCATTGCCATCGGATTCAT
TCTGATCGCAGTGGCCGCACTGGGGGCCTATGGAGCCGTCAAGGAGAGTG
TGATGGTCATTAATCTGTACGGAGTGTGCCTTTTCCTGGTGTTCATCCTC
GAGGTTTCTGCCGCCATCGCCGCCTTTGTGATGCAATCGCAGGTGAGGGG
CATGCTGATCCGAACCATGAACCAGGCCCTGGCTGAGTATGAACACGATC
CCTACGTGGAATCTGGAGTGGACTTCATGCAATCTATGCTAGAGTGTTGC
GGAGTTAATGAGCCGGAGGACTGGAAGGACTACCTATCCGCCAATGTGAA
CTTCACTCTGGGAGTGGATGACGTGGTGGTGCCCAACTCATGCTGCGGCA
ACCAACCAACAAGTCTGAACGACTCCACCCAGATGACCTGTATGGAGACC
TACGACTACGGCTGCTTCCGCAAGATGAACTTCATTGTGTCGCAGAGCGC
CATGCTGATTGCCACCGGAGCCACCACTGTGGCCTTTGTCCAGCTTCTCG
GCGTGCTCTGCGCCTTTATGCTGGCCAAGACGCTGCGCCGCAACAAGTCC
ATCCGCGAGGCACGCCGCTGGCAGCTGCAGCAGAGCCTCGGCGTCCTCAT
CTCCGGCGGAAAGATGGCACCGCCCCAGAATTCCGCTGTCACCGGCTATC
AGCAGTTGGATAACGGAGAGCAGGGCTCCCACGAACCCTACACCTACACG
CCCCAGAGCCCCAGCGTTAACTAAGCGGCGACATCGATCGAAGCCATATT
TATACAGTATAGCATTCCTTAAAAGATCCCCTTGTATATGTAACTTTTTA
ATTTGTTAACTTAAAATATATTAAAACGAAATAAACGCAGTGGTGTTAGA
CTACCTGCTAAAAGGTAAAAAAAAAAAAAAAAAAAAAAAAA

LP09584.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fb-RB 1264 Tsp29Fb-RB 134..1250 1..1117 5585 100 Plus
Tsp29Fb.a 1172 Tsp29Fb.a 70..1170 17..1117 5505 100 Plus
Tsp29Fb-RA 1214 Tsp29Fb-RA 112..1212 17..1117 5505 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8938032..8938660 488..1116 3145 100 Plus
chr2L 23010047 chr2L 8937485..8937674 128..317 950 100 Plus
chr2L 23010047 chr2L 8937773..8937944 317..488 860 100 Plus
chr2L 23010047 chr2L 8936437..8936552 17..132 565 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8939115..8939744 488..1117 3150 100 Plus
2L 23513712 2L 8938568..8938757 128..317 950 100 Plus
2L 23513712 2L 8938856..8939027 317..488 860 100 Plus
2L 23513712 2L 8937520..8937635 17..132 565 99.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8939115..8939744 488..1117 3150 100 Plus
2L 23513712 2L 8938568..8938757 128..317 950 100 Plus
2L 23513712 2L 8938856..8939027 317..488 860 100 Plus
2L 23513712 2L 8937520..8937635 17..132 565 99.1 Plus
Blast to na_te.dros performed on 2019-03-16 12:20:00 has no hits.

LP09584.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:20:57 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8937774..8937944 318..488 100 -> Plus
chr2L 8936307..8936322 1..16 100 -> Plus
chr2L 8936437..8936548 17..128 100 -> Plus
chr2L 8937486..8937674 129..317 100 -> Plus
chr2L 8938033..8938660 489..1116 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:39:56 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RC 1..927 48..974 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:21:25 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RC 1..927 48..974 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:17:11 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 1..927 48..974 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:12:16 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RC 1..927 48..974 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:41 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 1..927 48..974 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:47:33 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 1..1116 1..1116 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:21:24 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 1..1116 1..1116 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:17:11 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 1..1116 1..1116 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:12:16 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 1..1116 1..1116 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:41 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 1..1116 1..1116 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:20:57 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8937390..8937405 1..16 100 -> Plus
2L 8937520..8937631 17..128 100 -> Plus
2L 8938569..8938757 129..317 100 -> Plus
2L 8938857..8939027 318..488 100 -> Plus
2L 8939116..8939743 489..1116 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:20:57 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8937390..8937405 1..16 100 -> Plus
2L 8937520..8937631 17..128 100 -> Plus
2L 8938569..8938757 129..317 100 -> Plus
2L 8938857..8939027 318..488 100 -> Plus
2L 8939116..8939743 489..1116 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:20:57 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8937390..8937405 1..16 100 -> Plus
2L 8937520..8937631 17..128 100 -> Plus
2L 8938569..8938757 129..317 100 -> Plus
2L 8938857..8939027 318..488 100 -> Plus
2L 8939116..8939743 489..1116 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:17:11 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8937390..8937405 1..16 100 -> Plus
arm_2L 8937520..8937631 17..128 100 -> Plus
arm_2L 8938569..8938757 129..317 100 -> Plus
arm_2L 8938857..8939027 318..488 100 -> Plus
arm_2L 8939116..8939743 489..1116 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:44:54 Download gff for LP09584.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8939116..8939743 489..1116 100   Plus
2L 8938857..8939027 318..488 100 -> Plus
2L 8937390..8937405 1..16 100 -> Plus
2L 8937520..8937631 17..128 100 -> Plus
2L 8938569..8938757 129..317 100 -> Plus

LP09584.hyp Sequence

Translation from 47 to 973

> LP09584.hyp
MSNRELQLNSGMKCAKYMLIIVSFMFALTAILLIMVGTTIQTIFGDFSLF
IDGHFSSPPALLIAIGFILIAVAALGAYGAVKESVMVINLYGVCLFLVFI
LEVSAAIAAFVMQSQVRGMLIRTMNQALAEYEHDPYVESGVDFMQSMLEC
CGVNEPEDWKDYLSANVNFTLGVDDVVVPNSCCGNQPTSLNDSTQMTCME
TYDYGCFRKMNFIVSQSAMLIATGATTVAFVQLLGVLCAFMLAKTLRRNK
SIREARRWQLQQSLGVLISGGKMAPPQNSAVTGYQQLDNGEQGSHEPYTY
TPQSPSVN*

LP09584.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fb-PC 308 CG9496-PC 1..308 1..308 1579 100 Plus
Tsp29Fb-PA 308 CG9496-PA 1..308 1..308 1579 100 Plus
Tsp29Fb-PB 308 CG9496-PB 1..308 1..308 1579 100 Plus
Tsp47F-PB 239 CG9033-PB 5..238 11..251 324 29.3 Plus
Tsp39D-PB 235 CG8666-PB 3..231 9..249 300 26.1 Plus

LP09584.pep Sequence

Translation from 47 to 973

> LP09584.pep
MSNRELQLNSGMKCAKYMLIIVSFMFALTAILLIMVGTTIQTIFGDFSLF
IDGHFSSPPALLIAIGFILIAVAALGAYGAVKESVMVINLYGVCLFLVFI
LEVSAAIAAFVMQSQVRGMLIRTMNQALAEYEHDPYVESGVDFMQSMLEC
CGVNEPEDWKDYLSANVNFTLGVDDVVVPNSCCGNQPTSLNDSTQMTCME
TYDYGCFRKMNFIVSQSAMLIATGATTVAFVQLLGVLCAFMLAKTLRRNK
SIREARRWQLQQSLGVLISGGKMAPPQNSAVTGYQQLDNGEQGSHEPYTY
TPQSPSVN*

LP09584.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15554-PA 306 GF15554-PA 1..306 1..306 1361 83.7 Plus
Dana\GF12397-PA 239 GF12397-PA 10..238 16..251 295 28.3 Plus
Dana\GF14328-PA 235 GF14328-PA 3..231 9..249 282 27.8 Plus
Dana\GF15553-PA 248 GF15553-PA 4..244 8..252 262 25.9 Plus
Dana\GF15597-PA 313 GF15597-PA 17..272 14..258 179 22.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25316-PA 311 GG25316-PA 1..311 1..308 1462 88.7 Plus
Dere\GG22652-PA 239 GG22652-PA 10..238 16..251 304 28.7 Plus
Dere\GG21299-PA 235 GG21299-PA 3..231 9..249 281 26.6 Plus
Dere\GG25314-PA 248 GG25314-PA 4..244 8..252 265 27.1 Plus
Dere\GG12603-PA 304 GG12603-PA 41..301 13..256 188 24.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13874-PA 310 GH13874-PA 1..310 1..308 1308 81 Plus
Dgri\GH20509-PA 240 GH20509-PA 10..237 16..250 304 29.2 Plus
Dgri\GH13315-PA 235 GH13315-PA 3..231 9..249 300 27 Plus
Dgri\GH13873-PA 247 GH13873-PA 4..243 8..252 262 27.5 Plus
Dgri\GH21496-PA 223 GH21496-PA 9..223 16..249 198 26.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fb-PC 308 CG9496-PC 1..308 1..308 1579 100 Plus
Tsp29Fb-PA 308 CG9496-PA 1..308 1..308 1579 100 Plus
Tsp29Fb-PB 308 CG9496-PB 1..308 1..308 1579 100 Plus
Tsp47F-PB 239 CG9033-PB 5..238 11..251 324 29.3 Plus
Tsp39D-PB 235 CG8666-PB 3..231 9..249 300 26.1 Plus
Tsp29Fa-PC 248 CG9494-PC 4..244 8..252 281 27.9 Plus
Tsp29Fa-PB 248 CG9494-PB 4..244 8..252 281 27.9 Plus
Tsp29Fa-PA 248 CG9494-PA 4..244 8..252 281 27.9 Plus
Tsp86D-PC 316 CG4591-PC 30..294 14..262 223 26.2 Plus
Tsp86D-PB 291 CG4591-PB 30..289 14..256 222 26 Plus
Tsp86D-PA 291 CG4591-PA 30..289 14..256 222 26 Plus
Tsp3A-PB 304 CG10742-PB 41..301 13..256 216 25.7 Plus
Tsp3A-PA 304 CG10742-PA 41..301 13..256 216 25.7 Plus
Tsp26A-PC 277 CG9093-PC 18..274 14..251 208 24.4 Plus
Tsp26A-PD 275 CG9093-PD 18..272 14..251 206 23.4 Plus
Tsp26A-PB 314 CG9093-PB 18..206 14..195 187 25.3 Plus
CG30160-PA 222 CG30160-PA 9..221 16..248 182 23.3 Plus
Tsp42Eb-PB 222 CG18816-PB 9..221 16..248 182 23.3 Plus
Tsp74F-PB 236 CG5492-PB 4..231 9..242 164 23.8 Plus
Tsp74F-PA 236 CG5492-PA 4..231 9..242 164 23.8 Plus
Tsp66E-PC 267 CG4999-PC 6..266 11..253 164 24.2 Plus
Tsp66E-PA 267 CG4999-PA 6..266 11..253 164 24.2 Plus
Tsp66E-PB 267 CG4999-PB 6..266 11..253 164 24.2 Plus
Tsp42Ee-PB 228 CG10106-PB 1..223 8..250 163 24.7 Plus
Tsp42Ee-PA 228 CG10106-PA 1..223 8..250 163 24.7 Plus
Tsp96F-PC 268 CG6120-PC 3..262 8..247 157 21.6 Plus
Tsp96F-PA 268 CG6120-PA 3..262 8..247 157 21.6 Plus
Tsp96F-PB 284 CG6120-PB 3..262 8..247 157 21.6 Plus
Tsp42Ea-PC 226 CG18817-PC 1..218 8..247 149 21.4 Plus
Tsp42Ea-PB 226 CG18817-PB 1..218 8..247 149 21.4 Plus
Tsp42Ea-PA 226 CG18817-PA 1..218 8..247 149 21.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17426-PA 308 GI17426-PA 1..308 1..308 1270 79.3 Plus
Dmoj\GI21055-PA 240 GI21055-PA 10..237 16..250 308 29.6 Plus
Dmoj\GI17425-PA 248 GI17425-PA 4..244 8..252 301 27.2 Plus
Dmoj\GI12231-PA 235 GI12231-PA 3..231 9..249 293 28.1 Plus
Dmoj\GI19465-PA 223 GI19465-PA 9..222 16..248 202 27.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25579-PA 308 GL25579-PA 1..308 1..308 1473 88.6 Plus
Dper\GL10398-PA 239 GL10398-PA 10..238 16..251 297 28.7 Plus
Dper\GL26662-PA 235 GL26662-PA 3..231 9..249 282 25.7 Plus
Dper\GL25578-PA 248 GL25578-PA 4..244 8..252 253 28 Plus
Dper\GL12547-PA 290 GL12547-PA 82..288 61..256 170 25 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21832-PA 308 GA21832-PA 1..308 1..308 1465 88.3 Plus
Dpse\GA21493-PA 239 GA21493-PA 10..237 16..250 300 28.8 Plus
Dpse\GA21246-PA 235 GA21246-PA 3..231 9..249 288 27.4 Plus
Dpse\GA21830-PA 248 GA21830-PA 4..244 8..252 255 28 Plus
Dpse\GA22650-PA 303 GA22650-PA 29..288 14..256 172 24.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17272-PA 308 GM17272-PA 1..308 1..308 1626 98.4 Plus
Dsec\GM20434-PA 225 GM20434-PA 8..224 28..251 280 28 Plus
Dsec\GM23410-PA 235 GM23410-PA 3..231 9..249 280 26.1 Plus
Dsec\GM17261-PA 248 GM17261-PA 4..244 8..252 259 27.5 Plus
Dsec\GM23909-PA 290 GM23909-PA 82..288 61..256 185 26.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23575-PA 308 GD23575-PA 1..308 1..308 1629 98.7 Plus
Dsim\GD24319-PA 235 GD24319-PA 3..231 9..249 287 26.6 Plus
Dsim\GD25905-PA 246 GD25905-PA 10..245 16..251 285 27.9 Plus
Dsim\GD23574-PA 1578 GD23574-PA 1354..1574 28..252 255 28.3 Plus
Dsim\GD24608-PA 304 GD24608-PA 41..301 13..256 187 25.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18361-PA 310 GJ18361-PA 1..310 1..308 1283 80.6 Plus
Dvir\GJ17850-PA 235 GJ17850-PA 3..231 9..249 302 28.9 Plus
Dvir\GJ21977-PA 240 GJ21977-PA 10..234 16..247 300 29.6 Plus
Dvir\GJ18360-PA 248 GJ18360-PA 4..244 8..252 248 24.8 Plus
Dvir\GJ19203-PA 310 GJ19203-PA 48..307 14..256 179 25.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24539-PA 308 GK24539-PA 1..308 1..308 1379 82.5 Plus
Dwil\GK21888-PA 239 GK21888-PA 3..238 9..251 313 29.5 Plus
Dwil\GK18739-PA 235 GK18739-PA 3..231 9..249 281 26.6 Plus
Dwil\GK24538-PA 248 GK24538-PA 4..244 8..252 262 26.2 Plus
Dwil\GK21772-PA 222 GK21772-PA 9..222 16..249 191 26.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18807-PA 308 GE18807-PA 1..308 1..308 1525 91.9 Plus
Dyak\GE13526-PA 239 GE13526-PA 10..238 16..251 302 28.7 Plus
Dyak\GE12914-PA 235 GE12914-PA 3..231 9..249 282 26.6 Plus
Dyak\GE18806-PA 248 GE18806-PA 12..244 16..252 257 26.7 Plus
Dyak\GE25811-PA 275 GE25811-PA 18..272 14..251 201 23.4 Plus