Clone LP09632 Report

Search the DGRC for LP09632

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:96
Well:32
Vector:pOT2
Associated Gene/TranscriptPof-RA
Protein status:LP09632.pep: gold
Preliminary Size:1622
Sequenced Size:1670

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3691 2001-01-01 Release 2 assignment
CG3691 2001-07-04 Blastp of sequenced clone
CG3691 2003-01-01 Sim4 clustering to Release 3
Pof 2008-04-29 Release 5.5 accounting
Pof 2008-08-15 Release 5.9 accounting
CG33228 2008-08-15 Release 5.9 accounting
Pof 2008-12-18 5.12 accounting
CG33228 2008-12-18 5.12 accounting

Clone Sequence Records

LP09632.complete Sequence

1670 bp (1670 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052060

> LP09632.complete
ATAGAACAGACTTTTCCAGTTTCCACAACTTTAGCTAGGAACACGTTCCA
CATTTTTCCACATTTTTGATACCTTAACAAAATGGATTCAAAACGCGCGG
CCCTTGAATCCGGCGACGGTCCGGACGCCAAGCGCCTTGATACCACCGAT
GATCAAGACAAAGAAGCGTCGGGGGGCGACGGCAGTCAGGTTATGCTGGC
CAAACACGTAGCACCCTACACGGGCCACGGATGTACTCCACCGATGGAGT
CCTATTTGTTCGAACCGACTCCCGCCGGGAGTCAACTTCTGCCGTGGAAA
ACTAGCGTTGATTTGGACAACGACGCCGAGCTGGAGAAGCCCACCAGTGA
CAAGAAACCCGACACTGCCAAGTTGTCCCGTCGGGAGCTGGCCAAAATGC
GCCGTGAACACACATTAAGGGCCCTCGCCCTGGAACGCGAGTTGACCAAC
AAACCGGGGCAGACACCCGCTTCCGAAGTGTTGCTCGTCCGCTTTCCTGA
TCCCGAGATTACTGCTCCCATGCTGGCAGGACTGTCCAAGGATATTCGGG
ATGTGGTCTTGCCCATTAGCGTGGCTCCACGATACTGTCTAGTGCATCTA
AAGGCCGGTGCCGATGTGGAGGCCACCATCTGCGACATAAACAGGGTGCG
CTTCGGTACGGGGCACCTTCGGGCGGAGCTTAAGCCGTTCTCCGATGAGG
AGCAGGCCGAGTTCATTGATCCCTGTTCTCTGTATGTGGGCAACATACCG
TTCAACATGACCACATCGGCCATAAAGGCCTATTTCGCCAACGCCATGCG
CGTGGACATCGGAGTGCTGAAGCGCGAGAAGCGCGCTCGCTACGCCTTTG
TGCGTTACGCCTCACCTGACCAGACCATGGAAGCGTTCAAGGAGCTGGTC
GACTCACCGCTGAACAGCCGCACTCTCACAGTCCGCTATCGGCGACTCCG
GAAGCGCGCCGGGATGCCAATGGTGCAGTGCGCCACCTCCTTTCAGGCGC
TGCAATCCCCAAATGGAGACGACGACAACACTGACTGCAAGGTCATATCT
CCACCGCCGTTAGAGTCTATCATAATTAGCGACAGCGATAACTGCTCAGA
TTCCAGTGGCAACGGCAAGGAAGACGGCAAGCGCAAGAAGAAGATAAATG
AACAGGAAAGAGAGATTGAAAAGCTCAAGCGTCAAATGGCCGAGTACGGC
GCTATTATAAAAAGTTTGCAATTTAGACAGAACAGCTTAGAAGATACATT
TATACCTGACCTTACACCCAAAGTAGAGCCGAGCGTGAATCCCACAGGTT
GTTTACTAGGATCCAATGCGGTGCACCTAATGCGTGACATTAAGAAAGAG
TGCGACTATTTGGGCATCCCTGATCCCGTACCGGCTACCAAGCCGACAAC
ACAAGCTCAAGATGACAGCCAGAAGAAAGCCAAAAGATCGTGTTTTGGCC
GCTTGTTTACGGGTCCTTTCAGACGAGGCACTAGTGCGATGAAGACTGCT
GACGAGTACGAGAAGGATGACAGACTTGAGGAGCTCTATGCTCAACTGGA
ACGCGATCCTGATCCTTAATCTGTCATGCTACAGTGTACCAAATTACTCG
TCGTAGACGAATTAGAATAATAGTTTAGTTTATTTTTTATTGGAAAAAAA
AAAAAAAAAAAAAAAAAAAA

LP09632.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
Pof-RA 2041 Pof-RA 122..1765 1..1644 8220 100 Plus
Pof-RB 1923 Pof-RB 98..1711 31..1644 8070 100 Plus
Pof.b 1991 Pof.b 107..1715 36..1644 8045 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20555794..20556678 359..1243 4425 100 Plus
chr2R 21145070 chr2R 20555382..20555739 1..358 1790 100 Plus
chr2R 21145070 chr2R 20556990..20557197 1436..1643 1040 100 Plus
chr2R 21145070 chr2R 20556738..20556932 1242..1436 975 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24669902..24670786 359..1243 4425 100 Plus
2R 25286936 2R 24669490..24669847 1..358 1790 100 Plus
2R 25286936 2R 24671098..24671306 1436..1644 1045 100 Plus
2R 25286936 2R 24670846..24671040 1242..1436 975 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24671101..24671985 359..1243 4425 100 Plus
2R 25260384 2R 24670689..24671046 1..358 1790 100 Plus
2R 25260384 2R 24672297..24672505 1436..1644 1045 100 Plus
2R 25260384 2R 24672045..24672239 1242..1436 975 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:58:55 has no hits.

LP09632.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:59:47 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20555382..20555739 1..358 100 -> Plus
chr2R 20555794..20556678 359..1243 100 -> Plus
chr2R 20556740..20556931 1244..1435 100 -> Plus
chr2R 20556990..20557197 1436..1643 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:40:01 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RA 1..1488 82..1569 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:13:46 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RA 1..1488 82..1569 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:19:42 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RB 1..1488 82..1569 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:45:03 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RA 1..1488 82..1569 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:47:46 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RB 1..1488 82..1569 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:06:35 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RA 75..1717 1..1643 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:13:46 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RA 75..1717 1..1643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:19:42 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RA 94..1736 1..1643 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:45:03 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RA 75..1717 1..1643 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:47:46 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RA 94..1736 1..1643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:59:47 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24669490..24669847 1..358 100 -> Plus
2R 24669902..24670786 359..1243 100 -> Plus
2R 24670848..24671039 1244..1435 100 -> Plus
2R 24671098..24671305 1436..1643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:59:47 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24669490..24669847 1..358 100 -> Plus
2R 24669902..24670786 359..1243 100 -> Plus
2R 24670848..24671039 1244..1435 100 -> Plus
2R 24671098..24671305 1436..1643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:59:47 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24669490..24669847 1..358 100 -> Plus
2R 24669902..24670786 359..1243 100 -> Plus
2R 24670848..24671039 1244..1435 100 -> Plus
2R 24671098..24671305 1436..1643 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:19:42 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20558371..20558562 1244..1435 100 -> Plus
arm_2R 20558621..20558828 1436..1643 100   Plus
arm_2R 20557013..20557370 1..358 100 -> Plus
arm_2R 20557425..20558309 359..1243 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:22:49 Download gff for LP09632.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24670707..24671064 1..358 100 -> Plus
2R 24671119..24672003 359..1243 100 -> Plus
2R 24672065..24672256 1244..1435 100 -> Plus
2R 24672315..24672522 1436..1643 100   Plus

LP09632.pep Sequence

Translation from 81 to 1568

> LP09632.pep
MDSKRAALESGDGPDAKRLDTTDDQDKEASGGDGSQVMLAKHVAPYTGHG
CTPPMESYLFEPTPAGSQLLPWKTSVDLDNDAELEKPTSDKKPDTAKLSR
RELAKMRREHTLRALALERELTNKPGQTPASEVLLVRFPDPEITAPMLAG
LSKDIRDVVLPISVAPRYCLVHLKAGADVEATICDINRVRFGTGHLRAEL
KPFSDEEQAEFIDPCSLYVGNIPFNMTTSAIKAYFANAMRVDIGVLKREK
RARYAFVRYASPDQTMEAFKELVDSPLNSRTLTVRYRRLRKRAGMPMVQC
ATSFQALQSPNGDDDNTDCKVISPPPLESIIISDSDNCSDSSGNGKEDGK
RKKKINEQEREIEKLKRQMAEYGAIIKSLQFRQNSLEDTFIPDLTPKVEP
SVNPTGCLLGSNAVHLMRDIKKECDYLGIPDPVPATKPTTQAQDDSQKKA
KRSCFGRLFTGPFRRGTSAMKTADEYEKDDRLEELYAQLERDPDP*

LP09632.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Pof-PA 509 GF13001-PA 1..506 1..492 1637 67.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22999-PA 499 GG22999-PA 1..499 1..495 2261 86.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20330-PA 400 GH20330-PA 17..365 90..438 868 51.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
Pof-PC 495 CG3691-PC 1..495 1..495 2576 100 Plus
Pof-PA 495 CG3691-PA 1..495 1..495 2576 100 Plus
Pof-PB 495 CG3691-PB 1..495 1..495 2576 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20001-PA 581 GI20001-PA 1..479 1..434 1003 47.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17315-PA 433 GL17315-PA 1..259 1..256 576 49.6 Plus
Dper\GL18619-PA 351 GL18619-PA 59..319 94..404 466 40 Plus
Dper\GL17315-PA 433 GL17315-PA 260..432 329..494 367 53.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17615-PA 510 GA17615-PA 1..509 1..494 1059 49.5 Plus
Dpse\GA25720-PA 269 GA25720-PA 46..254 86..295 410 45.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11893-PA 495 GM11893-PA 1..495 1..495 2472 95.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11891-PA 495 GD11891-PA 1..495 1..495 2489 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21250-PA 550 GJ21250-PA 1..490 1..443 1012 46.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21426-PA 550 GK21426-PA 10..550 10..489 835 41.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14436-PA 496 GE14436-PA 1..496 1..495 2261 89 Plus

LP09632.hyp Sequence

Translation from 81 to 1568

> LP09632.hyp
MDSKRAALESGDGPDAKRLDTTDDQDKEASGGDGSQVMLAKHVAPYTGHG
CTPPMESYLFEPTPAGSQLLPWKTSVDLDNDAELEKPTSDKKPDTAKLSR
RELAKMRREHTLRALALERELTNKPGQTPASEVLLVRFPDPEITAPMLAG
LSKDIRDVVLPISVAPRYCLVHLKAGADVEATICDINRVRFGTGHLRAEL
KPFSDEEQAEFIDPCSLYVGNIPFNMTTSAIKAYFANAMRVDIGVLKREK
RARYAFVRYASPDQTMEAFKELVDSPLNSRTLTVRYRRLRKRAGMPMVQC
ATSFQALQSPNGDDDNTDCKVISPPPLESIIISDSDNCSDSSGNGKEDGK
RKKKINEQEREIEKLKRQMAEYGAIIKSLQFRQNSLEDTFIPDLTPKVEP
SVNPTGCLLGSNAVHLMRDIKKECDYLGIPDPVPATKPTTQAQDDSQKKA
KRSCFGRLFTGPFRRGTSAMKTADEYEKDDRLEELYAQLERDPDP*

LP09632.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pof-PC 495 CG3691-PC 1..495 1..495 2576 100 Plus
Pof-PA 495 CG3691-PA 1..495 1..495 2576 100 Plus
Pof-PB 495 CG3691-PB 1..495 1..495 2576 100 Plus