Clone LP09696 Report

Search the DGRC for LP09696

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:96
Well:96
Vector:pOT2
Associated Gene/TranscriptTango9-RA
Protein status:LP09696.pep: gold
Preliminary Size:1398
Sequenced Size:1595

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10007 2001-01-01 Release 2 assignment
CG10007 2001-09-19 Blastp of sequenced clone
CG10007 2003-01-01 Sim4 clustering to Release 3
Tango9 2008-04-29 Release 5.5 accounting
Tango9 2008-08-15 Release 5.9 accounting
Tango9 2008-12-18 5.12 accounting

Clone Sequence Records

LP09696.complete Sequence

1595 bp (1595 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058745

> LP09696.complete
CTAATTCGCACTACTTGCAAAAAAATTACTAGTTACTTAGGTTTTTGACC
TTGAAAAAGGTAAAGTTACTGGTTAATGACCACAACAACTCAAGTGGATT
ATATAGATCTGTGGAAGGGCAGTCAATTGACCGTCTGGCCGCACTTTTTT
GCACTTATCACTGCGCAGTCACAATTGCAAATTGCACAAAGAACGTCAAT
ATTTATAAATCGAATTAACGCTGCACCCGTCAAGTGAATCTTCCGCCGAC
GAATGGATCATCGTGTTTTCCTGTCGCTGATCTTTGTGCTCAGCGGCACC
TTCAACGTTCTGGTGGTGAAGTGGGCCAATCAACAACAGGTAATCGGCAG
CGATGGAAAACTTCATGGATTTCAACATCCAGTGGTGTTCACACTGCTCA
TGTTCCTGGGCGAGTTCCTGTGCTTTGCGGTCTTCAAGGTGATCCGCCTG
ATCTCCAATCGTCGTGGAGTTATATCCGATCTGGATAGCATCTTGTCGCA
GGACAGCAGTGAGTTCCGCCCTGTTAGCATGCTATTGCCCACTTTGCTGG
ATGCGGCAGCCTCCATTCTGTTGTTCACCGGACTTTACTTGACTTACGCC
ACCAGCTTTCAGATGATAAGAGGCGCCGCCCTGATCTTTGTGGGCATCTT
TAGCACCATGTTTCTGAATCACACGCTGACCGGACGGCACTGGCTGGCCA
TCTTTACGATATCGTGCGGCCTGCTGGACATTATCAGTCTGGACGTCCAT
CGCGTTGAATACGACCTGGTCACGTTGCCTTACACGGACTACAAATCCAT
TCTGACCGGCGACTTACTCATCATCATTGCTGAAATTCTGCACGGACTGC
AATATGTTTGCGAGGAGAAACAGCTAAAAACCTCGAATGTTGCTCCACTG
CAAGCTGCTGGCTGGCAGGGAATCTTCGGCTTGGGCATCACCTCGATGCT
GGCCATTTGCATGAACTTCCTGCCGAGCATTGATCCATTTAGCTGTAGTT
CGCGTGCAGTTTTCGACGATTGGGGTGATCTCTTTGCGGCTCTGCAGGGG
AGTATCTCATTGATTATGACTCTGATTGCCTTCACCATCTCATGTGCCAT
GTACAACTTCATTGGACTGTACATTGCGATGTACTCGTCCAGCGCCAACC
GGCTTCTGGCCGATGGCCTACGCGTTTACTTCATCTGGGTGTTTGTGATT
ATCATGGAGTGGGAGTACATGAATCTGGTCACGATCATGGGCTTCCTCAT
CCTGCAAATGGGTATCATCCTCTACCGACAGGCCCTATTCCTCGACTGGT
ATCGAGCTGCAGTGGCCCGCTGGTATCGTGCTCGTTACGTGGATTTGGGT
ACTGAGAATGCGGCTGCTCCGAACAGCCGGCCAGCGGATGTGATCTAAGG
TGACTGAGGAGTAGCTGAGGTGAAAGGATTGTGATGAGAGAGATGGGCTG
CAAATCAACCCTGGGCTGATTCTTGAAGATTACTTATCGATTATATGTAT
AGATGCAATAAGAAAATACACACATTAAATGTTAATTGAGCTCCTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP09696.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
Tango9-RA 1862 Tango9-RA 235..1780 1..1546 7730 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7798499..7799423 1545..621 4595 99.8 Minus
chr3R 27901430 chr3R 7799952..7800274 323..1 1615 100 Minus
chr3R 27901430 chr3R 7799482..7799636 623..469 775 100 Minus
chr3R 27901430 chr3R 7799717..7799866 470..321 750 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11973089..11974014 1546..621 4630 100 Minus
3R 32079331 3R 11974543..11974865 323..1 1615 100 Minus
3R 32079331 3R 11974073..11974227 623..469 775 100 Minus
3R 32079331 3R 11974308..11974457 470..321 750 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11713920..11714845 1546..621 4630 100 Minus
3R 31820162 3R 11715374..11715696 323..1 1615 100 Minus
3R 31820162 3R 11714904..11715058 623..469 775 100 Minus
3R 31820162 3R 11715139..11715288 470..321 750 100 Minus
Blast to na_te.dros performed 2019-03-16 12:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 1256..1294 1059..1097 114 76.9 Plus

LP09696.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:21:01 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7798499..7799421 623..1545 99 <- Minus
chr3R 7799483..7799636 469..622 100 <- Minus
chr3R 7799719..7799866 321..468 100 <- Minus
chr3R 7799955..7800274 1..320 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:40:03 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 1..1146 253..1398 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:58:18 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 1..1146 253..1398 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:17:49 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 1..1146 253..1398 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:27:32 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 1..1146 253..1398 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:49 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 1..1146 253..1398 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:45:02 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 1..1545 1..1545 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:58:18 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 1..1545 1..1545 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:17:49 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 46..1590 1..1545 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:27:32 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 1..1545 1..1545 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:49 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 46..1590 1..1545 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:21:01 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11973090..11974012 623..1545 100 <- Minus
3R 11974074..11974227 469..622 100 <- Minus
3R 11974310..11974457 321..468 100 <- Minus
3R 11974546..11974865 1..320 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:21:01 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11973090..11974012 623..1545 100 <- Minus
3R 11974074..11974227 469..622 100 <- Minus
3R 11974310..11974457 321..468 100 <- Minus
3R 11974546..11974865 1..320 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:21:01 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11973090..11974012 623..1545 100 <- Minus
3R 11974074..11974227 469..622 100 <- Minus
3R 11974310..11974457 321..468 100 <- Minus
3R 11974546..11974865 1..320 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:17:49 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7798812..7799734 623..1545 100 <- Minus
arm_3R 7799796..7799949 469..622 100 <- Minus
arm_3R 7800032..7800179 321..468 100 <- Minus
arm_3R 7800268..7800587 1..320 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:04:53 Download gff for LP09696.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11713921..11714843 623..1545 100 <- Minus
3R 11714905..11715058 469..622 100 <- Minus
3R 11715141..11715288 321..468 100 <- Minus
3R 11715377..11715696 1..320 100   Minus

LP09696.pep Sequence

Translation from 252 to 1397

> LP09696.pep
MDHRVFLSLIFVLSGTFNVLVVKWANQQQVIGSDGKLHGFQHPVVFTLLM
FLGEFLCFAVFKVIRLISNRRGVISDLDSILSQDSSEFRPVSMLLPTLLD
AAASILLFTGLYLTYATSFQMIRGAALIFVGIFSTMFLNHTLTGRHWLAI
FTISCGLLDIISLDVHRVEYDLVTLPYTDYKSILTGDLLIIIAEILHGLQ
YVCEEKQLKTSNVAPLQAAGWQGIFGLGITSMLAICMNFLPSIDPFSCSS
RAVFDDWGDLFAALQGSISLIMTLIAFTISCAMYNFIGLYIAMYSSSANR
LLADGLRVYFIWVFVIIMEWEYMNLVTIMGFLILQMGIILYRQALFLDWY
RAAVARWYRARYVDLGTENAAAPNSRPADVI*

LP09696.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23188-PA 382 GF23188-PA 1..382 1..381 1660 81.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17175-PA 381 GG17175-PA 1..381 1..381 1855 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12895-PA 382 GH12895-PA 1..382 1..381 1348 65.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
Tango9-PB 381 CG10007-PB 1..381 1..381 1950 100 Plus
Tango9-PA 381 CG10007-PA 1..381 1..381 1950 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24067-PA 381 GI24067-PA 1..381 1..381 1334 65.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21590-PA 381 GL21590-PA 1..381 1..381 1624 78.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10005-PA 381 GA10005-PA 1..381 1..381 1628 78.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26055-PA 381 GM26055-PA 1..381 1..381 1961 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20618-PA 261 GD20618-PA 1..261 121..381 1350 97.3 Plus
Dsim\GD15109-PA 91 GD15109-PA 1..76 1..76 370 93.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23715-PA 381 GJ23715-PA 1..381 1..381 1351 65.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11673-PA 370 GK11673-PA 1..370 1..381 1087 56.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24566-PA 381 GE24566-PA 1..381 1..381 1904 95.3 Plus

LP09696.hyp Sequence

Translation from 252 to 1397

> LP09696.hyp
MDHRVFLSLIFVLSGTFNVLVVKWANQQQVIGSDGKLHGFQHPVVFTLLM
FLGEFLCFAVFKVIRLISNRRGVISDLDSILSQDSSEFRPVSMLLPTLLD
AAASILLFTGLYLTYATSFQMIRGAALIFVGIFSTMFLNHTLTGRHWLAI
FTISCGLLDIISLDVHRVEYDLVTLPYTDYKSILTGDLLIIIAEILHGLQ
YVCEEKQLKTSNVAPLQAAGWQGIFGLGITSMLAICMNFLPSIDPFSCSS
RAVFDDWGDLFAALQGSISLIMTLIAFTISCAMYNFIGLYIAMYSSSANR
LLADGLRVYFIWVFVIIMEWEYMNLVTIMGFLILQMGIILYRQALFLDWY
RAAVARWYRARYVDLGTENAAAPNSRPADVI*

LP09696.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
Tango9-PB 381 CG10007-PB 1..381 1..381 1950 100 Plus
Tango9-PA 381 CG10007-PA 1..381 1..381 1950 100 Plus