Clone LP09747 Report

Search the DGRC for LP09747

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:97
Well:47
Vector:pOT2
Associated Gene/TranscriptCG44247-RA
Protein status:LP09747.pep: gold
Sequenced Size:3605

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Atf-2-RB 2009-06-22 Replacement based on scoring

Clone Sequence Records

LP09747.complete Sequence

3605 bp assembled on 2009-11-02

GenBank Submission: BT100206.1

> LP09747.complete
AGCAACGCAGCCCAGGAGTCGAGTCCCATCCGCATATATCCCCACAGCCA
TATGTCCATCTGAGCTTCTTCGCCAGCAATCTGTGAGAAAAGTGCACCAT
TTGACATTTTAACCACCCGGTAGAGTGCAGCATAACCTTTGCTAGGACAC
CTAATAACCCCCAAAAATCCTCGAGAAGTGCAGTTGGCGCAGGTTACTAG
CCAGAAATATTGCACGCCCACGCGAAAGTGCAAAAGTTCGGGGAGCAACC
ACCAGCAGCTGCCAATTGGATATATTCGCAAGTGTGTGCGAGTGTGGGTG
TTGAAAATCAATAACCCTCGTCGACGTCGTCGTTCTAGCCAAAGCCCCAT
TAACCGGCCATATGGCAGTGGTGGCAGAGGTCGTGCAGTGCTAGATAGTT
CCCATTCGAAATTGATTTCTGAGGTCTCGAGAAATCCGCAAGTGGGAGTG
CATTTGGTGGCAAGTGCAAGATGGCGGCTCGCCTGGAAATCACCGTTAGC
TTGGCGCTCGCTGCAACGCTACTGTGCAGCATATTGGGTCATTGCGAAAT
GTCCGTTTACCCAGGATTGCGCCGCCGACCCATTCAGCCGCCTGTGATGG
ATCCGCAGAGTGAGCAAGAGTATGCTTTTCTGGCCCAGATGATGGAGCAG
TATGCCCGCCGTCGGCTGCAGCAGCAGTTCGACCAACAGCTGCACGAAAT
CAACCTGAAGATGGATCGTCAGCGGCAGCTCTTGGAGCAGGAGCGGTACC
GCCAGCGGCAGCAGGAGCTCCAGGTACAGCGCGAGGCGGAGGAGGACTAC
GAGTCCAACGGAAACAACCTGAACCAGCAGTACGACCAGTACGACAACGC
GGAGGCAGAGGCCAGCTACGGCAGTCCGATGGAGGCAGTCTCTGATCTCC
AAAGTCCTCCATTGTACCTGCCTCGCCTGCCCAACCTACCACCCTTGCCC
AGCCTTCCGAATCGGCCCAGCCTGGGCAACTCCCCGAACAGGAACAGTGT
GCTCCGCGAACGGATTCCCTTTGCTGTAGGTCCCAGCGACGCTCGCTTCT
TTGACAACCCGAACGACCCTTCGGGGGAGCTGGATTCCCGGGCGCTGGAG
GACTACGAGGAGTATGCTCCCATTGAGCCCACAACCGAAGTAGCCACCAC
CGCCAGTAAGACCAAGATCGATACGCCAGTACCGGCTCCCGTGCCCGTTG
AGCCGCCCAAACTGCTTGACGCCGCCAACACCAACTTCCACCGCATCAAT
CCCCAGTCCGCCGCCGCCGCAGCCGTGGCGGGAGTGAATATTCCCCAGAG
CAAAGAACAACCACCCCATGAACTTAACGCACTGATCAACAAGCTGCAAA
AGCAAAGCAAAGCGCCCTCTCATTTGACGCTGGTCAACGGAGGTGATTCC
AGTCAGGAGCAGATTGTGCTGCGCCAGCACCTGGGCATGAACAGCGAGAT
GGGGGTGTACATAGTGGCCCTAATAGCGGGGGTTAGTGCAGCGGTGACCG
TTGGGCTTCTTGCCCTCGGAGTAACTTGGTTCCATAATCGACACAAGGCA
GCAGCGGACGTGGAATACCCTGCCTACGGCGTTACCGGGCCGAACAAGGA
TGTCTCGCCGTCCGGTGACAGAAAGCTGGCCCAGAGCGCCCAAATGTACC
ACTACCAGCACCAGAAGCAGCAGATCATCGCCATGGAGAACCAGGCCACG
GATGGTAGCTGCGGCATGTCGGACGTGGAGAGCGACGACGACAACGAGGA
GGGCGACTACACGGTGTACGAGTGCCCCGGCCTGGCGCCCACTGGTGAGA
TGGAGGTGAAGAATCCGCTCTTCCTGGACGAGACGCCGGCCACGCCGTCA
AACAACCTGTCGTCCCAAACCGCTGGAGCTGCCAATGCGGCAGCAGCGAC
CAATAACAACATCACGCAGGCTACCCCCCAGCAGCCGGCCACCCTGAAGA
AGGGAACGGTCAAGCCGAACATAAATCTCCTGAACGCAACGGGCACTGCA
GCAGCAGCAGCTTCAGCCGCATCAGCAGCCTCAGCGACCGGAGGGGAGGA
GCCCAAGCAGAAGCGCAAGAGCAAGAAGTAAGGCGACTGGACATTGTTTT
CCCTCTTGGGGCAATTGGTAAAGTTTGACTGATCCATTGTCAGCCAACAG
ACACATCCTCTTACACAGATTCAAAAACAGACCAGACTAGGTGCTGGGAG
CCATCTACGCATATTACAGATACTTCAGGGAATTTAATTCCGGGAGCCAA
GCAAACCACACACACGACACTACACACATCTGTCACTATTCTTCCTTCCC
TATATATGCATAAGTCCGGTAATGTAATGTAATTGCTATGCAGTAAGAAT
AGCTCCAGTAAACCGTGAGTACCCCAAACCCGAACCCAATCCCAATCCCA
ATCTCATCCGCCCAGTTTCCACCCGCTGTCAGTTGCACAACGCTGATGAT
TCTATTACGATGCGGCAAGCGTAATCCTGTGTTGCATGGCAGCGTGGGTT
ATTGTATATCAACTTTTTTTGTCACTGCGAATCGTTGGATTTACGGTCTG
GAGAAGCTGAGGAGCTTAGGAGGAGGGACAACCAACCGAAGCAAACTAAC
ATATTATATTATTATAAATATATGTATACATACACACATATTTATATATA
GATATATATTCATGTAATTATTGTATTATATACACGAAGGCGGACACCTT
TTTACTTACCTGTCTGTGTGGTGTACTATCTTCTCTCATTTTTACTACGC
TTTGTGATCGATCCTAAATTATCTGTGTCAATTTAGAAATACAATTCCGG
CATCCAAACTTTTTGCATGCGCATGCAAATATATTTCGTAGAGCAGGAGA
CGCGACTAGAGGAGGAGAGGATTATTTACAAGTAAAACTTAACAATAATT
TCCCTGCACATTCATGTAAAGTAAATGAAAAACGACTGATAACACACAAA
AAGAACACGCGTCTATTGTACAAAAAAGAGAAATCGATACGAAGAAACAA
TTTATTTACCTATTAGTGAGAGATTATTAATGGAAACTATCAGCGGAAAC
AATTCCCAGCCCCAAAAACTACTAAAGGAAACTGTAGCGAACATTTTACT
GTATTGCTGTAAATAATCATGAAACATTGGGCAAAGGACAGAGTTAGAAA
CCATTGCGGCCGAAACAATACACTGAATACAACCGAATTGAAGAACTTGC
GAGTTCAAAAACTAGCTAAAGAAAACACAACACGAATATTATATTTCTAT
TAACTAGGCGAATGCAAAGCATCTTGGAGCATTGAACATTGAATTTGAAT
TCCAAATCGAAACTGACTTAGCCACAATAAAATGCGCATAGCATATGAAT
GTACGTTGAGCGTAATGTTGAGTTTGAAATATATATTTTATGGTGTTTGG
CCAAAAACACGAAAATAATTAGAACTCAAGGCGAGGACTCGAAATGCAAA
ATTGCAACTTGAAAGCGGAGGTGCAAAGAACACACTTTGTAAATGAAGAG
CATAATTTAATTTATATTTATTCATGTATGATAACCGTAAAACACACAAA
TTATACAATATGCATACAGAATAAACTAAACTAACCAAAAAAAAAAAAAA
AAAAA

LP09747.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Atf-2.b 3867 Atf-2.b 170..3759 1..3590 17950 100 Plus
Atf-2-RB 2871 Atf-2-RB 170..2871 1..2702 13510 100 Plus
Atf-2.a 2565 Atf-2.a 245..2565 339..2659 11605 100 Plus
Atf-2.a 2565 Atf-2.a 109..244 146..281 680 100 Plus
Atf-2.a 2565 Atf-2.a 27..109 1..83 415 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20765122..20767174 1528..3586 10140 99.6 Plus
chr2R 21145070 chr2R 20764095..20765063 562..1530 4830 99.9 Plus
chr2R 21145070 chr2R 20762693..20763257 1..565 2825 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24879163..24881225 1528..3590 10315 100 Plus
2R 25286936 2R 24878136..24879104 562..1530 4845 100 Plus
2R 25286936 2R 24876734..24877298 1..565 2825 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24880362..24882424 1528..3590 10315 100 Plus
2R 25260384 2R 24879335..24880303 562..1530 4845 100 Plus
2R 25260384 2R 24877933..24878497 1..565 2825 100 Plus
Blast to na_te.dros performed 2019-03-16 07:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1046..1119 1641..1716 130 70.1 Plus

LP09747.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:24:03 Download gff for LP09747.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20762693..20763256 1..564 100 -> Plus
chr2R 20764098..20765061 565..1528 99 -> Plus
chr2R 20765123..20767174 1529..3586 94   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-11-02 09:18:27 Download gff for LP09747.complete
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RB 1..1611 471..2081 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:15:43 Download gff for LP09747.complete
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RB 1..1611 471..2081 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:36:30 Download gff for LP09747.complete
Subject Subject Range Query Range Percent Splice Strand
CG44247-RA 1..1611 471..2081 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:30:52 Download gff for LP09747.complete
Subject Subject Range Query Range Percent Splice Strand
CG44247-RA 1..1611 471..2081 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-11-02 09:18:26 Download gff for LP09747.complete
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RB 27..2685 1..2659 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:15:43 Download gff for LP09747.complete
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RB 27..2685 1..2659 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:30 Download gff for LP09747.complete
Subject Subject Range Query Range Percent Splice Strand
CG44247-RB 44..3629 1..3586 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:30:52 Download gff for LP09747.complete
Subject Subject Range Query Range Percent Splice Strand
CG44247-RB 44..3629 1..3586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:24:03 Download gff for LP09747.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24876734..24877297 1..564 100 -> Plus
2R 24878139..24879102 565..1528 100 -> Plus
2R 24879164..24881221 1529..3586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:24:03 Download gff for LP09747.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24876734..24877297 1..564 100 -> Plus
2R 24878139..24879102 565..1528 100 -> Plus
2R 24879164..24881221 1529..3586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:24:03 Download gff for LP09747.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24876734..24877297 1..564 100 -> Plus
2R 24878139..24879102 565..1528 100 -> Plus
2R 24879164..24881221 1529..3586 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:30 Download gff for LP09747.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20764257..20764820 1..564 100 -> Plus
arm_2R 20765662..20766625 565..1528 100 -> Plus
arm_2R 20766687..20768744 1529..3586 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:05:40 Download gff for LP09747.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24877951..24878514 1..564 100 -> Plus
2R 24879356..24880319 565..1528 100 -> Plus
2R 24880381..24882438 1529..3586 100   Plus

LP09747.pep Sequence

Translation from 470 to 2080

> LP09747.pep
MAARLEITVSLALAATLLCSILGHCEMSVYPGLRRRPIQPPVMDPQSEQE
YAFLAQMMEQYARRRLQQQFDQQLHEINLKMDRQRQLLEQERYRQRQQEL
QVQREAEEDYESNGNNLNQQYDQYDNAEAEASYGSPMEAVSDLQSPPLYL
PRLPNLPPLPSLPNRPSLGNSPNRNSVLRERIPFAVGPSDARFFDNPNDP
SGELDSRALEDYEEYAPIEPTTEVATTASKTKIDTPVPAPVPVEPPKLLD
AANTNFHRINPQSAAAAAVAGVNIPQSKEQPPHELNALINKLQKQSKAPS
HLTLVNGGDSSQEQIVLRQHLGMNSEMGVYIVALIAGVSAAVTVGLLALG
VTWFHNRHKAAADVEYPAYGVTGPNKDVSPSGDRKLAQSAQMYHYQHQKQ
QIIAMENQATDGSCGMSDVESDDDNEEGDYTVYECPGLAPTGEMEVKNPL
FLDETPATPSNNLSSQTAGAANAAAATNNNITQATPQQPATLKKGTVKPN
INLLNATGTAAAAASAASAASATGGEEPKQKRKSKK*

LP09747.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13346-PA 536 GF13346-PA 1..535 1..536 2043 84.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23014-PA 542 GG23014-PA 1..542 1..536 2759 96.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20365-PA 531 GH20365-PA 1..531 1..536 1609 66.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG44247-PB 536 CG44247-PB 1..536 1..536 2759 100 Plus
CG44247-PA 536 CG44247-PA 1..536 1..536 2759 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20038-PA 510 GI20038-PA 1..482 1..504 1499 69.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11194-PA 523 GL11194-PA 1..523 1..536 2130 81.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24636-PA 527 GA24636-PA 1..527 1..536 2131 81.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11908-PA 274 GM11908-PA 1..274 1..274 1384 95.6 Plus
Dsec\GM11909-PA 199 GM11909-PA 1..199 327..536 947 92.9 Plus
Dsec\GM18751-PA 185 GM18751-PA 1..162 1..162 832 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11906-PA 536 GD11906-PA 1..536 1..536 2806 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21282-PA 531 GJ21282-PA 1..531 1..536 1489 67.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21678-PA 516 GK21678-PA 16..516 20..536 1902 73.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14451-PA 537 GE14451-PA 1..537 1..536 2755 96.5 Plus

LP09747.hyp Sequence

Translation from 470 to 2080

> LP09747.hyp
MAARLEITVSLALAATLLCSILGHCEMSVYPGLRRRPIQPPVMDPQSEQE
YAFLAQMMEQYARRRLQQQFDQQLHEINLKMDRQRQLLEQERYRQRQQEL
QVQREAEEDYESNGNNLNQQYDQYDNAEAEASYGSPMEAVSDLQSPPLYL
PRLPNLPPLPSLPNRPSLGNSPNRNSVLRERIPFAVGPSDARFFDNPNDP
SGELDSRALEDYEEYAPIEPTTEVATTASKTKIDTPVPAPVPVEPPKLLD
AANTNFHRINPQSAAAAAVAGVNIPQSKEQPPHELNALINKLQKQSKAPS
HLTLVNGGDSSQEQIVLRQHLGMNSEMGVYIVALIAGVSAAVTVGLLALG
VTWFHNRHKAAADVEYPAYGVTGPNKDVSPSGDRKLAQSAQMYHYQHQKQ
QIIAMENQATDGSCGMSDVESDDDNEEGDYTVYECPGLAPTGEMEVKNPL
FLDETPATPSNNLSSQTAGAANAAAATNNNITQATPQQPATLKKGTVKPN
INLLNATGTAAAAASAASAASATGGEEPKQKRKSKK*

LP09747.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG44247-PB 536 CG44247-PB 1..536 1..536 2759 100 Plus
CG44247-PA 536 CG44247-PA 1..536 1..536 2759 100 Plus