Clone LP09756 Report

Search the DGRC for LP09756

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:97
Well:56
Vector:pOT2
Associated Gene/TranscriptCG10827-RA
Protein status:LP09756.pep: gold
Preliminary Size:1988
Sequenced Size:1684

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10827 2001-01-01 Release 2 assignment
CG10827 2001-09-19 Blastp of sequenced clone
CG10827 2003-01-01 Sim4 clustering to Release 3
CG10827 2008-04-29 Release 5.5 accounting
CG10827 2008-08-15 Release 5.9 accounting
CG10827 2008-12-18 5.12 accounting

Clone Sequence Records

LP09756.complete Sequence

1684 bp (1684 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058746

> LP09756.complete
AGATGTTCCGCCTGTTGAACGCACTACTGATCGCCATCGTGCTGGTAGCC
CATCCCGCTTGGTCCGCTCCGGAATGCGGCCGTACTCCGGAGGAGTGCAG
GGAGCACAGGATGCATCCGGATATGCCGGAACCGGAACGACATGGCAAGG
CATTCCGGGTGGTTGATGGCGAGGATACCAACGCCTACTGGCGCCAACAG
GGAGTGCAGTTTGTCCAGCAGAAGTTGGCTTCTGAACCGAATAAGCGCCA
GGCCAAGAATGTGATCCTCTTTCTCGGCGATGGAATGGGTGTGACCACCA
CGTCAGCGGCTCGCAATCTCTTGGGCGGCGAGGAGAAGTCCCTGTCCTTC
GAAAACTTCCCCTTCACGGGCCTCTCGAAGACCTATTCCGTGGATAAGAT
TGTGCCCGACTCCGCCTGCACGGCCACTGCCTATTTGTGTGGCGTGAAAG
GTCAGGAGGGAACTATTGGCGTGAATGGCCAGGTGCCCCGCACCGACTGC
AAGGTCATGCTGGACGAGAGCACCCACGTCGACTCCATTGCCAAGTGGGC
CATGGAGGCGGGCAAGTGGGCGGGTCTGGTGACCACCACCCGCGTCACTC
ACGCCTCGCCTTCTGGAGTGTACGCCCACATAGCTGAGCGCGACTGGGAG
AACGATGCGGAGGTGGCTACCGACTGTGGAGCAGGCTCCGGAATCAATGA
CATTGCCTATCAACTGGCCCGCGGCGAGGTGGGCAGCAAGCTGAAGGTGA
TCATGGGCGGCGGACGCAAGCACTTTGTCGACTCCAGTCTGGAATCCTGG
GGCAAGCGTACCGATGGACTTAACCTTATCGATGAATTTAAATCAGCAAG
CGAAAATAATGTCTATGTGACCACCGCCGCAGAGTTGGCCGCCGTGGATG
TCACCAAAACGGATCGCCTCCTCGGTCTCTTCAACGACGACCATCTGCAG
TACCTCATGGAGACCACAACAGAGAGCAGCCAGCCCACTTTGGAGCAGAT
GACCCGCAAGGCCATCGAGTACATGAGCCAGAACGAGCAGGGCTACTTCC
TCTTCATCGAGGGCGGTCGCATCGACCAGGCCCACCACATCAACCAGGCG
CGTATGGCTCTGAATGAAACTATTGAGTTCTCCAAGGCCATCGCCGCTGC
CCAGGAGCTGACCAGCGAGGATGACACCTTGCTGGTGGTCACCGCCGATC
ACTCACATGTGTTCACCTACGCAGGATACTCGTACCGTGGATCTGATGTA
TTTGGAAAGACCCCAGTAAATGGACACGATGGCAAACCATACATGGTTCT
AAGCTACGCCAACGGACCGAGTTACGAGAATTTCTACGACGCGGAGACGA
TGGAGCGCAAGGATCCCACCACGGTGGTGAAGGGAGACCACGACGATGAG
TTTCCCTCGGGTGTCCCCATCGACATGGACTCGCACGGAGGCGACGATGT
GCCCGTCTACGCGTTGGGTCCCTGGGCGCACCTGTTCACCGGAGTCTACG
AACAGAGCACCATTCCGCATATGATGGCCTACGCATCCTGCTTGGGCGAC
GGTCATACCATGTGCAAGTAGGATGGAAACGCAGATGGTGCAAGGTTGCC
ATGCCGCCTGGTTGTAACAATTAAGTTTGAAGGTCATTAAATCCAGTAAG
CTGCATTTGCAAAAAAAAAAAAAAAAAAAAAAAA

LP09756.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10827-RA 1930 CG10827-RA 162..1822 1..1661 8305 100 Plus
CG5150-RA 1807 CG5150-RA 557..663 546..652 220 80.3 Plus
CG5150-RA 1807 CG5150-RA 1463..1572 1440..1549 220 80 Plus
CG8147-RA 2060 CG8147-RA 811..901 576..666 155 78 Plus
CG8147-RA 2060 CG8147-RA 637..677 402..442 145 90.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16829606..16830837 1232..1 6040 99.4 Minus
chr3R 27901430 chr3R 16829021..16829449 1660..1232 2145 100 Minus
chr3L 24539361 chr3L 5588674..5588780 546..652 220 80.4 Plus
chr3L 24539361 chr3L 5589580..5589689 1440..1549 220 80 Plus
chr3L 24539361 chr3L 5586476..5586560 628..544 185 81.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21005745..21006976 1232..1 6160 100 Minus
3R 32079331 3R 21005159..21005588 1661..1232 2150 100 Minus
3L 28110227 3L 5596102..5596208 546..652 220 80.4 Plus
3L 28110227 3L 5597008..5597117 1440..1549 220 80 Plus
3L 28110227 3L 5593904..5593988 628..544 185 81.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20746576..20747807 1232..1 6160 100 Minus
3R 31820162 3R 20745990..20746419 1661..1232 2150 100 Minus
3L 28103327 3L 5589202..5589308 546..652 220 80.3 Plus
3L 28103327 3L 5590108..5590217 1440..1549 220 80 Plus
3R 31820162 3R 9236377..9236467 576..666 155 78 Plus
3R 31820162 3R 9236203..9236243 402..442 145 90.2 Plus
Blast to na_te.dros performed on 2019-03-15 16:15:08 has no hits.

LP09756.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:15:53 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16829021..16829448 1233..1660 100 <- Minus
chr3R 16829606..16830837 1..1232 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:40:06 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 1..1569 3..1571 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:58:19 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 1..1569 3..1571 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:57:36 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 1..1569 3..1571 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:27:33 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 1..1569 3..1571 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:31:12 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 1..1569 3..1571 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:45:03 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 12..1671 1..1660 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:58:19 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 12..1671 1..1660 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:36 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 15..1674 1..1660 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:27:33 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 12..1671 1..1660 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:31:12 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 15..1674 1..1660 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:53 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21005160..21005587 1233..1660 100 <- Minus
3R 21005745..21006976 1..1232 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:53 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21005160..21005587 1233..1660 100 <- Minus
3R 21005745..21006976 1..1232 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:53 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21005160..21005587 1233..1660 100 <- Minus
3R 21005745..21006976 1..1232 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:36 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16830882..16831309 1233..1660 100 <- Minus
arm_3R 16831467..16832698 1..1232 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:04:55 Download gff for LP09756.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20745991..20746418 1233..1660 100 <- Minus
3R 20746576..20747807 1..1232 100   Minus

LP09756.hyp Sequence

Translation from 2 to 1570

> LP09756.hyp
MFRLLNALLIAIVLVAHPAWSAPECGRTPEECREHRMHPDMPEPERHGKA
FRVVDGEDTNAYWRQQGVQFVQQKLASEPNKRQAKNVILFLGDGMGVTTT
SAARNLLGGEEKSLSFENFPFTGLSKTYSVDKIVPDSACTATAYLCGVKG
QEGTIGVNGQVPRTDCKVMLDESTHVDSIAKWAMEAGKWAGLVTTTRVTH
ASPSGVYAHIAERDWENDAEVATDCGAGSGINDIAYQLARGEVGSKLKVI
MGGGRKHFVDSSLESWGKRTDGLNLIDEFKSASENNVYVTTAAELAAVDV
TKTDRLLGLFNDDHLQYLMETTTESSQPTLEQMTRKAIEYMSQNEQGYFL
FIEGGRIDQAHHINQARMALNETIEFSKAIAAAQELTSEDDTLLVVTADH
SHVFTYAGYSYRGSDVFGKTPVNGHDGKPYMVLSYANGPSYENFYDAETM
ERKDPTTVVKGDHDDEFPSGVPIDMDSHGGDDVPVYALGPWAHLFTGVYE
QSTIPHMMAYASCLGDGHTMCK*

LP09756.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10827-PA 522 CG10827-PA 1..522 1..522 2767 100 Plus
CG5150-PB 517 CG5150-PB 17..516 20..521 1516 56.3 Plus
CG5150-PA 517 CG5150-PA 17..516 20..521 1516 56.3 Plus
CG10592-PA 524 CG10592-PA 26..514 33..515 1104 46.8 Plus
CG1809-PA 515 CG1809-PA 43..512 57..515 1093 50.1 Plus

LP09756.pep Sequence

Translation from 2 to 1570

> LP09756.pep
MFRLLNALLIAIVLVAHPAWSAPECGRTPEECREHRMHPDMPEPERHGKA
FRVVDGEDTNAYWRQQGVQFVQQKLASEPNKRQAKNVILFLGDGMGVTTT
SAARNLLGGEEKSLSFENFPFTGLSKTYSVDKIVPDSACTATAYLCGVKG
QEGTIGVNGQVPRTDCKVMLDESTHVDSIAKWAMEAGKWAGLVTTTRVTH
ASPSGVYAHIAERDWENDAEVATDCGAGSGINDIAYQLARGEVGSKLKVI
MGGGRKHFVDSSLESWGKRTDGLNLIDEFKSASENNVYVTTAAELAAVDV
TKTDRLLGLFNDDHLQYLMETTTESSQPTLEQMTRKAIEYMSQNEQGYFL
FIEGGRIDQAHHINQARMALNETIEFSKAIAAAQELTSEDDTLLVVTADH
SHVFTYAGYSYRGSDVFGKTPVNGHDGKPYMVLSYANGPSYENFYDAETM
ERKDPTTVVKGDHDDEFPSGVPIDMDSHGGDDVPVYALGPWAHLFTGVYE
QSTIPHMMAYASCLGDGHTMCK*

LP09756.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17005-PA 524 GF17005-PA 1..522 1..521 2412 83.7 Plus
Dana\GF17006-PA 464 GF17006-PA 1..462 1..521 1823 65.5 Plus
Dana\GF23984-PA 517 GF23984-PA 12..516 9..521 1528 55.7 Plus
Dana\GF10455-PA 525 GF10455-PA 26..516 33..515 1110 46 Plus
Dana\GF17216-PA 543 GF17216-PA 27..533 34..521 1101 47 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15026-PA 522 GG15026-PA 1..522 1..522 2745 95.8 Plus
Dere\GG15276-PA 517 GG15276-PA 7..516 4..521 1535 55.4 Plus
Dere\GG14123-PA 524 GG14123-PA 26..514 33..515 1129 47.4 Plus
Dere\GG24085-PA 515 GG24085-PA 43..512 57..515 1117 50.3 Plus
Dere\GG16809-PA 546 GG16809-PA 29..536 17..521 1089 46.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19241-PA 526 GH19241-PA 3..521 4..521 2022 71.9 Plus
Dgri\GH15197-PA 525 GH15197-PA 27..524 26..521 1506 56 Plus
Dgri\GH16243-PA 525 GH16243-PA 11..515 8..515 1135 47.5 Plus
Dgri\GH18436-PA 542 GH18436-PA 52..532 51..521 1094 47.1 Plus
Dgri\GH15376-PA 523 GH15376-PA 23..511 42..522 1085 46.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
Alp5-PA 522 CG10827-PA 1..522 1..522 2767 100 Plus
Alp9-PB 517 CG5150-PB 17..516 20..521 1516 56.3 Plus
Alp9-PA 517 CG5150-PA 17..516 20..521 1516 56.3 Plus
Alp10-PA 524 CG10592-PA 26..514 33..515 1104 46.8 Plus
Alp6-PA 515 CG1809-PA 43..512 57..515 1093 50.1 Plus
phu-PA 546 CG8147-PA 56..536 51..521 1080 49 Plus
Alp1-PA 523 CG5656-PA 42..513 62..521 1050 47.4 Plus
Alp1-PB 530 CG5656-PB 42..520 62..521 1033 46.7 Plus
Alp8-PB 533 CG3264-PB 64..531 62..521 954 44.1 Plus
Alp8-PA 533 CG3264-PA 64..531 62..521 954 44.1 Plus
Alp2-PA 538 CG3290-PA 65..531 62..521 950 44 Plus
Alp7-PA 543 CG3292-PA 64..539 57..521 910 42.9 Plus
Alp12-PE 596 CG16771-PE 112..579 63..515 813 40.6 Plus
Alp12-PD 596 CG16771-PD 112..579 63..515 813 40.6 Plus
Alp12-PC 596 CG16771-PC 112..579 63..515 813 40.6 Plus
Alp12-PB 596 CG16771-PB 112..579 63..515 813 40.6 Plus
Alp12-PA 596 CG16771-PA 112..579 63..515 813 40.6 Plus
Alp11-PA 483 CG8105-PA 39..473 60..521 797 40 Plus
Alp4-PA 596 CG1462-PA 56..541 62..515 791 37.6 Plus
Alp4-PB 502 CG1462-PB 1..447 95..515 731 38.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22009-PA 526 GI22009-PA 3..520 4..521 2030 71.1 Plus
Dmoj\GI12135-PA 526 GI12135-PA 35..525 34..521 1466 56 Plus
Dmoj\GI13179-PA 525 GI13179-PA 32..516 33..515 1152 47.8 Plus
Dmoj\GI24012-PA 547 GI24012-PA 66..536 62..521 1110 48.6 Plus
Dmoj\GI19888-PA 524 GI19888-PA 7..517 1..515 1102 46.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23248-PA 525 GL23248-PA 1..523 1..521 2293 79.8 Plus
Dper\GL12007-PA 538 GL12007-PA 9..528 4..515 1141 46.9 Plus
Dper\GL17170-PA 520 GL17170-PA 43..513 57..515 1112 49.2 Plus
Dper\GL16938-PA 533 GL16938-PA 63..529 62..521 961 44.8 Plus
Dper\GL16939-PA 542 GL16939-PA 37..538 21..521 907 41.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10582-PA 525 GA10582-PA 1..523 1..521 2299 80.2 Plus
Dpse\GA18693-PA 522 GA18693-PA 31..518 34..522 1517 56.7 Plus
Dpse\GA10422-PA 537 GA10422-PA 9..528 4..515 1146 47.1 Plus
Dpse\GA14786-PA 520 GA14786-PA 43..513 57..515 1114 49.4 Plus
Dpse\GA24639-PA 521 GA24639-PA 23..511 44..521 1107 48 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15118-PA 522 GM15118-PA 1..522 1..522 2767 97.1 Plus
Dsec\GM14710-PA 517 GM14710-PA 17..516 20..521 1517 55.9 Plus
Dsec\GM21133-PA 515 GM21133-PA 43..512 57..515 1124 50.1 Plus
Dsec\GM13909-PA 524 GM13909-PA 26..514 33..515 1109 46.8 Plus
Dsec\GM23808-PA 546 GM23808-PA 29..536 17..521 1103 47.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20021-PA 521 GD20021-PA 1..521 1..522 2667 95.2 Plus
Dsim\GD13892-PA 511 GD13892-PA 17..510 20..521 1481 54.9 Plus
Dsim\GD13186-PA 524 GD13186-PA 26..514 33..515 1112 46.8 Plus
Dsim\GD18617-PA 546 GD18617-PA 29..536 17..521 1097 47.4 Plus
Dsim\GD25137-PA 533 GD25137-PA 64..531 62..521 942 44.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10462-PA 520 GJ10462-PA 3..517 4..521 2143 76.3 Plus
Dvir\GJ13410-PA 526 GJ13410-PA 27..525 26..521 1498 56.3 Plus
Dvir\GJ11955-PA 528 GJ11955-PA 15..519 9..515 1156 46.5 Plus
Dvir\GJ23643-PA 545 GJ23643-PA 30..535 17..521 1097 45.8 Plus
Dvir\GJ15058-PA 524 GJ15058-PA 45..517 57..515 1089 47.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11139-PA 529 GK11139-PA 1..521 1..521 1877 64.9 Plus
Dwil\GK17300-PA 524 GK17300-PA 25..523 29..521 1465 55.4 Plus
Dwil\GK10963-PA 547 GK10963-PA 25..537 29..521 1158 47.7 Plus
Dwil\GK16879-PA 530 GK16879-PA 34..521 36..515 1127 46.7 Plus
Dwil\GK21822-PA 520 GK21822-PA 39..513 53..515 1083 48.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25027-PA 522 GE25027-PA 1..522 1..522 2725 95.4 Plus
Dyak\GE21498-PA 517 GE21498-PA 17..516 20..521 1546 56.7 Plus
Dyak\GE20547-PA 524 GE20547-PA 22..514 29..515 1118 46.8 Plus
Dyak\GE19286-PA 515 GE19286-PA 43..512 57..515 1116 50.3 Plus
Dyak\GE25953-PA 548 GE25953-PA 29..538 17..521 1095 47 Plus