Clone LP09975 Report

Search the DGRC for LP09975

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:99
Well:75
Vector:pOT2
Associated Gene/TranscriptDronc-RA
Protein status:LP09975.pep: gold
Preliminary Size:2002
Sequenced Size:2069

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8091 2001-01-01 Release 2 assignment
CG8091 2001-09-19 Blastp of sequenced clone
CG8091 2003-01-01 Sim4 clustering to Release 3
Nc 2008-04-29 Release 5.5 accounting
Nc 2008-08-15 Release 5.9 accounting
Nc 2008-12-18 5.12 accounting

Clone Sequence Records

LP09975.complete Sequence

2069 bp (2069 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058747

> LP09975.complete
CGTTCTCTGGTTAAAATGGCGCACCCACAAGCAGCCACACCAATCCCAAA
GTTTCATTTATTAGTTTAGTGGCGAGTTTGGCGGCGCGAAACGCTCGTTG
GTCCTTTTGTTTCGAAAGAAATCCTATTCGAAGATCCCCGATCCTTGCTA
GGATCATCTAGTGCAATATATAGACTAGTTAATTTACTTTTGGAAAAATA
AGGACACCAGCAGGGCCGCCGATTTGTGCCCCTTTCTTGAAAGTCGCAAA
ACAAAAACAACGACGACAACAACAAAGCGGAGACAAAGAATCGACAAGTA
GCGATAAACGAAATCATTCCCGGGAAAACCTTGGAGACGGGTGATTCACT
GCCAATACCACTGCCAATTGGAGACTGATCACGGCAGCCATCCTTGGCGC
GCCCAATAAGCGGAGTCACCGGAACGCGTGGAAGCCATATCCGGAATGCA
GCCGCCGGAGCTCGAGATTGGAATGCCGAAGAGGCATCGCGAGCATATAC
GCAAGAATCTGAATATACTGGTTGAATGGACGAACTACGAGCGTCTGGCC
ATGGAGTGCGTGCAACAGGGCATCCTAACCGTTCAGATGCTAAGAAATAC
GCAGGATCTCAATGGCAAGCCATTCAACATGGACGAGAAGGATGTGCGTG
TGGAGCAGCATCGTAGGCTCCTATTGAAGATCACCCAGCGTGGTCCCACC
GCCTATAACCTGCTGATCAATGCACTGCGCAATATCAATTGTCTGGATGC
GGCCGTTCTATTGGAATCCGTCGATGAGTCCGATTCAAGGCCACCCTTTA
TCTCGCTAAACGAACGGAGAACCAGCCGGAAGTCGGCCGATATTGTGGAC
ACACCCTCACCCGAAGCCTCCGAAGGACCCTGCGTTAGCAAGCTCCGGAA
TGAGCCGCTGGGAGCACTCACCCCTTATGTGGGTGTCGTTGACGGTCCCG
AGGTAAAAAAATCGAAAAAGATACATGGTGGGGATAGTGCCATATTGGGC
ACATATAAGATGCAATCACGTTTCAACCGAGGCGTTTTGCTAATGGTTAA
CATAATGGACTATCCGGATCAAAACCGTCGACGGATCGGAGCCGAAAAGG
ACAGCAAGTCGTTGATACACTTGTTTCAAGAACTGAATTTTACGATTTTC
CCCTATGGGAACGTGAATCAGGATCAGTTCTTTAAACTTCTGACAATGGT
GACCTCCTCGTCGTATGTGCAGAATACCGAGTGTTTCGTAATGGTACTGA
TGACACACGGCAACAGTGTGGAGGGAAAAGAGAAGGTGGAGTTTTGCGAT
GGATCTGTGGTCGATATGCAGAAGATCAAGGACCATTTCCAGACGGCCAA
ATGTCCTTATTTGGTGAACAAGCCGAAGGTGCTTATGTTTCCCTTTTGCC
GCGGCGATGAATATGATTTGGGCCATCCAAAGAATCAAGGCAATCTCATG
GAGCCAGTGTATACGGCGCAAGAGGAGAAGTGGCCTGACACCCAGACGGA
GGGCATACCCAGCCCGAGCACCAATGTGCCAAGTCTTGCCGACACTCTGG
TCTGCTATGCTAATACGCCGGGCTATGTTACCCACCGCGATCTCGACACG
GGCAGCTGGTACATCCAGAAGTTTTGCCAAGTGATGGCCGATCATGCCCA
CGACACAGACCTTGAGGATATCCTAAAGAAGACGAGCGAAGCCGTGGGTA
ATAAGCGCACCAAGAAGGGTTCCATGCAGACAGGTGCCTATGATAATCTT
GGCTTTAATAAGAAACTCTACTTCAATCCCGGGTTTTTCAACGAATAGTT
GCCGCCACTGGACATTTTATCATTCCGGATGCATTTTTAACCGCATTTAT
GTTCTTATCGTCGCATTTAGTATGTCTTTTAGATTATGTGTTCTGTGCTC
GCGTGCTATAAAATGTTTATATTGTAACAAATACTCATTCAAGTATTCTT
CTAATACGTATTGCATACCTCATTTAAAGGTACGAAATTATGTAATTTAT
GTGATAACTGCCAGAAATCTACAAATATTATAATACAGAGTTCCAGTATA
TAAAAAAAAAAAAAAAAAA

LP09975.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Nc-RA 2208 Nc-RA 10..2061 1..2052 10260 100 Plus
Nc.a 2092 Nc.a 1..1738 1..1738 8675 99.9 Plus
Nc.a 2092 Nc.a 1732..1987 1797..2052 1280 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9961633..9962773 890..2030 5600 99.4 Plus
chr3L 24539361 chr3L 9960233..9961125 1..892 4280 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:54:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9969841..9971003 890..2052 5815 100 Plus
3L 28110227 3L 9968443..9969334 1..892 4460 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9962941..9964103 890..2052 5815 100 Plus
3L 28103327 3L 9961543..9962434 1..892 4460 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:34:42 has no hits.

LP09975.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:35:44 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9960233..9961125 1..892 98 -> Plus
chr3L 9961636..9962789 893..2051 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:40:17 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
Nc-RA 1..1353 446..1798 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:05 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
Nc-RA 1..1353 446..1798 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:25:40 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
Nc-RA 1..1353 446..1798 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:14 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
Nc-RA 1..1353 446..1798 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:28:40 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
Dronc-RA 1..1353 446..1798 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:12:29 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
Nc-RA 1..2051 1..2051 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:05 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
Nc-RA 1..2051 1..2051 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:25:40 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
Nc-RA 1..2015 37..2051 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:14 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
Nc-RA 1..2051 1..2051 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:28:40 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
Dronc-RA 1..2015 37..2051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:35:44 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9968443..9969334 1..892 100 -> Plus
3L 9969844..9971002 893..2051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:35:44 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9968443..9969334 1..892 100 -> Plus
3L 9969844..9971002 893..2051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:35:44 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9968443..9969334 1..892 100 -> Plus
3L 9969844..9971002 893..2051 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:25:40 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9961543..9962434 1..892 100 -> Plus
arm_3L 9962944..9964102 893..2051 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:19 Download gff for LP09975.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9961543..9962434 1..892 100 -> Plus
3L 9962944..9964102 893..2051 100   Plus

LP09975.pep Sequence

Translation from 445 to 1797

> LP09975.pep
MQPPELEIGMPKRHREHIRKNLNILVEWTNYERLAMECVQQGILTVQMLR
NTQDLNGKPFNMDEKDVRVEQHRRLLLKITQRGPTAYNLLINALRNINCL
DAAVLLESVDESDSRPPFISLNERRTSRKSADIVDTPSPEASEGPCVSKL
RNEPLGALTPYVGVVDGPEVKKSKKIHGGDSAILGTYKMQSRFNRGVLLM
VNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLT
MVTSSSYVQNTECFVMVLMTHGNSVEGKEKVEFCDGSVVDMQKIKDHFQT
AKCPYLVNKPKVLMFPFCRGDEYDLGHPKNQGNLMEPVYTAQEEKWPDTQ
TEGIPSPSTNVPSLADTLVCYANTPGYVTHRDLDTGSWYIQKFCQVMADH
AHDTDLEDILKKTSEAVGNKRTKKGSMQTGAYDNLGFNKKLYFNPGFFNE
*

LP09975.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10584-PA 450 GF10584-PA 1..449 1..450 1407 60.4 Plus
Dana\GF17937-PA 309 GF17937-PA 56..244 196..397 207 28.6 Plus
Dana\GF18666-PA 338 GF18666-PA 85..295 187..418 206 25.4 Plus
Dana\GF13064-PA 326 GF13064-PA 74..284 187..418 190 23.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15422-PA 451 GG15422-PA 1..451 1..450 1762 74 Plus
Dere\GG22866-PA 323 GG22866-PA 71..281 187..418 202 24.8 Plus
Dere\GG16826-PA 308 GG16826-PA 56..247 196..401 199 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16053-PA 470 GH16053-PA 13..467 8..447 986 45.1 Plus
Dgri\GH19945-PA 294 GH19945-PA 6..251 153..419 220 23 Plus
Dgri\GH20516-PA 309 GH20516-PA 49..270 186..421 218 28.7 Plus
Dgri\GH17516-PA 309 GH17516-PA 49..270 186..421 218 28.7 Plus
Dgri\GH19956-PA 351 GH19956-PA 97..307 187..418 204 22.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dronc-PA 450 CG8091-PA 1..450 1..450 2389 100 Plus
Drice-PA 339 CG7788-PA 86..288 187..410 199 24 Plus
Dcp-1-PA 323 CG5370-PA 74..280 191..417 193 24.9 Plus
Dredd-PD 488 CG7486-PD 254..486 191..445 161 25.2 Plus
Dredd-PG 440 CG7486-PG 200..438 191..445 155 24.6 Plus
Dredd-PE 494 CG7486-PE 254..492 191..445 155 24.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12317-PA 451 GI12317-PA 11..451 2..450 1083 49.8 Plus
Dmoj\GI22043-PA 345 GI22043-PA 92..302 187..418 218 24.4 Plus
Dmoj\GI22869-PA 295 GI22869-PA 91..271 219..419 208 27.4 Plus
Dmoj\GI20496-PA 318 GI20496-PA 67..276 187..418 207 26.4 Plus
Dmoj\GI10391-PA 539 GI10391-PA 57..248 196..401 192 26.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12563-PA 457 GL12563-PA 1..457 1..450 1405 59.9 Plus
Dper\GL23515-PA 344 GL23515-PA 91..301 187..418 217 23.6 Plus
Dper\GL27295-PA 308 GL27295-PA 56..243 196..397 204 26.2 Plus
Dper\GL16870-PA 323 GL16870-PA 95..281 211..418 194 24 Plus
Dper\GL11317-PA 257 GL11317-PA 5..207 181..404 183 24.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20817-PA 457 GA20817-PA 1..457 1..450 1408 59.9 Plus
Dpse\GA20588-PA 344 GA20588-PA 91..301 187..418 218 23.6 Plus
Dpse\GA13340-PA 308 GA13340-PA 56..243 196..397 204 26.2 Plus
Dpse\GA18828-PA 323 GA18828-PA 95..281 211..418 194 24 Plus
Dpse\GA24681-PA 261 GA24681-PA 5..221 181..418 186 24.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25197-PA 449 GM25197-PA 1..447 1..448 2015 82.4 Plus
Dsec\GM12823-PA 343 GM12823-PA 90..300 187..418 203 23.6 Plus
Dsec\GM15423-PA 308 GM15423-PA 56..247 196..401 201 27.2 Plus
Dsec\GM16025-PA 323 GM16025-PA 71..281 187..418 200 24.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14228-PA 449 GD14228-PA 1..447 1..448 2019 82.9 Plus
Dsim\GD21467-PA 343 GD21467-PA 90..300 187..418 207 24 Plus
Dsim\GD11774-PA 323 GD11774-PA 71..281 187..418 200 24.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13253-PA 445 GJ13253-PA 13..442 8..448 1065 48.8 Plus
Dvir\GJ22849-PA 310 GJ22849-PA 57..263 196..411 225 28.2 Plus
Dvir\GJ24096-PA 345 GJ24096-PA 92..302 187..418 217 24 Plus
Dvir\GJ23418-PA 300 GJ23418-PA 56..268 187..419 214 25 Plus
Dvir\GJ19552-PA 271 GJ19552-PA 4..218 172..406 185 23.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16787-PA 436 GK16787-PA 1..433 10..450 1172 52.4 Plus
Dwil\GK11928-PA 346 GK11928-PA 92..303 187..418 202 23.5 Plus
Dwil\GK11927-PA 255 GK11927-PA 10..220 187..418 200 23.8 Plus
Dwil\GK11868-PA 311 GK11868-PA 56..255 196..406 195 27.5 Plus
Dwil\GK23280-PA 330 GK23280-PA 77..288 187..418 191 24.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21731-PA 451 GE21731-PA 1..451 1..450 1810 75.5 Plus
Dyak\GE23886-PA 339 GE23886-PA 86..296 187..418 209 23.2 Plus
Dyak\GE26146-PA 308 GE26146-PA 56..247 196..401 199 27.2 Plus
Dyak\GE14302-PA 325 GE14302-PA 73..283 187..418 197 23.9 Plus

LP09975.hyp Sequence

Translation from 445 to 1797

> LP09975.hyp
MQPPELEIGMPKRHREHIRKNLNILVEWTNYERLAMECVQQGILTVQMLR
NTQDLNGKPFNMDEKDVRVEQHRRLLLKITQRGPTAYNLLINALRNINCL
DAAVLLESVDESDSRPPFISLNERRTSRKSADIVDTPSPEASEGPCVSKL
RNEPLGALTPYVGVVDGPEVKKSKKIHGGDSAILGTYKMQSRFNRGVLLM
VNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLT
MVTSSSYVQNTECFVMVLMTHGNSVEGKEKVEFCDGSVVDMQKIKDHFQT
AKCPYLVNKPKVLMFPFCRGDEYDLGHPKNQGNLMEPVYTAQEEKWPDTQ
TEGIPSPSTNVPSLADTLVCYANTPGYVTHRDLDTGSWYIQKFCQVMADH
AHDTDLEDILKKTSEAVGNKRTKKGSMQTGAYDNLGFNKKLYFNPGFFNE
*

LP09975.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dronc-PA 450 CG8091-PA 1..450 1..450 2389 100 Plus
Drice-PA 339 CG7788-PA 86..288 187..410 199 24 Plus
Dcp-1-PA 323 CG5370-PA 74..280 191..417 193 24.9 Plus
Dredd-PD 488 CG7486-PD 254..486 191..445 161 25.2 Plus
Dredd-PG 440 CG7486-PG 200..438 191..445 155 24.6 Plus