Clone LP10110 Report

Search the DGRC for LP10110

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:101
Well:10
Vector:pOT2
Associated Gene/TranscriptCG7083-RA
Protein status:LP10110.pep: gold
Sequenced Size:1982

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG70803 2007-09-25 DGC5 pick
CG7083 2008-04-29 Release 5.5 accounting
CG7083 2008-04-29 Picked prior to 5.5
CG7083 2008-08-15 Release 5.9 accounting
CG7083 2008-12-18 5.12 accounting

Clone Sequence Records

LP10110.complete Sequence

1982 bp assembled on 2007-10-25

GenBank Submission: BT031145

> LP10110.complete
AAGAACACGACAAGTAGTTGGAAACCCACGAATTAAACAATTTTTTTTGG
AGTTGCGTAATTGCATAAAAATAAATAAAGGCATAACCAGCGAAAATAAG
AAAACGAGAGCAAACAATTGAAAACAGAAAGTGCTGAAATAATAACAAAT
ACACTTGGCCATCAATTGCGTATATATATAATTGTTTAAATATATTCGCA
ACGCGAACTGATTTCACATATCAAGGTGAAAATGCTAGATCTGGAGATCG
TGCCGGAGATTTCCCTGGGCTGCGATGCCTGGGAATTTGTGCTGGGCATG
CACTTCTCGCAGGCTATCGCCATCATCCAGTCGCAGGTGGGCATCATCAA
GGGAGTCCAGGTGCTGTACTCGGATACCACTCCCCTGGGCGTGGACATCA
TTATCAACCTGCCACAGGATGGCGTTCGCTTGATCTTTGATCCCGTCAGT
CAGCGTTTGAAGACCATCGAGGTTTTCAACATGAAACTGGTGAAGCTGCG
GTATTTCGGCGTATACTTCAATTCCCCGGAGGTGCTGCCGAGTATCGAGC
AAATCGAGCACTCCTTTGGAGCCACACATCCTGGGGTTTACGATGCAGCC
AAACAATTGTTTGCTCTACACTTTCGCGGGCTGAGTTTCTACTTTCCGGT
GGACAGCAAGCTGCACTCGGGCTACGCCCATGGACTGAGTTCTCTGGTTT
TCCTGAATGGCGCCTCACCCGTCGTGTCCAAGATGTCTCTCTACGCAGGC
AGCAATGTGTTGGAGAACAGGGTACCATCTCTTCCCTTGTCCTGCTATCA
CCGCCAGATGTATTTGGAATCGGCCACTGTTCTCCGAACCGCCTTTGGTC
ACACGAAGGGTCTGAAGCTGAAGCTCTTTACTGAGGGTTCAGGAAGGGCT
TTGGAGCCACGCCGTCAGTGCTTTACGCGAGAGCTGCTCTTCGGCGATAG
CTGCGAGGATGTGGCCACCAGTCTTGGAGCACCCAATCGTATATTCTTCA
AGAGCGAGGACAAAATGAAGATACACAGCTCGAGTGTCAATCGACAAGCA
CAGAGCAAGCGAAGCGATATTTTCTTTAACTACTTTACACTTGGCATCGA
TGTGCTCTTTGATGCACGGACGCAGACCTGCAAGAAATTCATTCTGCACA
CCAACTACCCCGGTCACTTCAACTTTAATATGTACCATCGCTGCGAGTTC
CAGTTCCTGCTGCAGGCGGATCACCCTTCGATGAGTGATAGTGGTCACGA
TTTGGTGACGCCGACTAAGCAGGAACATGTGAACATAACCGCCTACACCA
AATGGGACGCGATCAGCAGCGCATTGGCCACCTCAGAGCGGCCAGTGGTG
CTGCATCGCGCCAGCTCGACGAACACAGCGAATCCGTTCGGCTCCACCTT
TTGCTATGGCTACCAAGACCTGATTTTCGAGGTGATGCCCAATAGCCACA
TCGCCTCGGTAACGCTCTACAATACTGCGCCTCCCAGGCAGCCAGCGCAT
TCCTGGCAGCAGCACAAAATGCAAGACATTCGCCTCACAGTGGCCTAAAG
TTGTGGAATTTACTGGGCTCCTTTCGCTGCTCCATGATGCTGAACAAGGG
AAAGCCCGCCGGTCGTGCTCTAATCTTTAAGCTACAACAATGATCTAACA
TAGCCGTAAAGTAGACACATACATTATATAGTAATATATAGATATATATA
TATACATGGTAGACGTAGATTTCCAATGTAAGCTAAGCCAATCATCGGAC
GAACTCTCTGACCAGGTTCATTCTGCGGTATTCCATTGCGATAGCTCGAT
TCAATTTGTTTCGACCCATAACTGACAATTAATAAGCCTCTTACGTTTAA
AAAATGCATGTCGTTAATATATTTCAGTACTTTAAGCTCCAATCGTGTAT
CTCTCTTTGAAAAAGAAAAAATCAGCAAAAAAATATATAAATATAAGGTT
TCGACAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP10110.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7083-RA 2039 CG7083-RA 84..2039 1..1957 9745 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8333185..8334908 224..1955 8385 99.1 Plus
chr3L 24539361 chr3L 8332900..8333125 1..227 1055 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:54:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8341145..8342881 224..1960 8685 100 Plus
3L 28110227 3L 8340860..8341085 1..227 1085 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8334245..8335981 224..1960 8685 100 Plus
3L 28103327 3L 8333960..8334185 1..227 1095 99.5 Plus
Blast to na_te.dros performed 2019-03-15 18:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 1367..1468 1806..1908 125 60.6 Plus
Stalker 7256 Stalker STALKER 7256bp 1259..1360 1806..1908 125 60.6 Plus
R2-element 3607 R2-element DMRER2DM 3607bp Derived from X51967 (g8432) (Rel. 24, Last updated, Version 1). 3382..3429 53..99 119 79.6 Plus
rover 7318 rover ROVER 7318bp 6556..6645 59..144 116 62.2 Plus

LP10110.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:58:17 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8332900..8333123 1..225 98 -> Plus
chr3L 8333187..8334908 226..1955 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:40:23 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
CG7083-RA 1..1317 232..1548 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:05:36 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
CG7083-RA 1..1317 232..1548 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:37:16 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
CG7083-RA 1..1317 232..1548 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:51:55 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
CG7083-RA 1..1317 232..1548 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:53 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
CG7083-RA 1..1317 232..1548 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:59:54 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
CG7083-RA 39..1585 1..1548 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:05:36 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
CG7083-RA 76..2029 1..1955 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:37:16 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
CG7083-RA 76..2029 1..1955 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:51:56 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
CG7083-RA 39..1585 1..1548 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:53 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
CG7083-RA 76..2029 1..1955 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:17 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8340860..8341083 1..225 99 -> Plus
3L 8341147..8342876 226..1955 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:17 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8340860..8341083 1..225 99 -> Plus
3L 8341147..8342876 226..1955 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:17 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8340860..8341083 1..225 99 -> Plus
3L 8341147..8342876 226..1955 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:37:16 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8333960..8334183 1..225 99 -> Plus
arm_3L 8334247..8335976 226..1955 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:57:47 Download gff for LP10110.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8333960..8334183 1..225 99 -> Plus
3L 8334247..8335976 226..1955 100   Plus

LP10110.pep Sequence

Translation from 231 to 1547

> LP10110.pep
MLDLEIVPEISLGCDAWEFVLGMHFSQAIAIIQSQVGIIKGVQVLYSDTT
PLGVDIIINLPQDGVRLIFDPVSQRLKTIEVFNMKLVKLRYFGVYFNSPE
VLPSIEQIEHSFGATHPGVYDAAKQLFALHFRGLSFYFPVDSKLHSGYAH
GLSSLVFLNGASPVVSKMSLYAGSNVLENRVPSLPLSCYHRQMYLESATV
LRTAFGHTKGLKLKLFTEGSGRALEPRRQCFTRELLFGDSCEDVATSLGA
PNRIFFKSEDKMKIHSSSVNRQAQSKRSDIFFNYFTLGIDVLFDARTQTC
KKFILHTNYPGHFNFNMYHRCEFQFLLQADHPSMSDSGHDLVTPTKQEHV
NITAYTKWDAISSALATSERPVVLHRASSTNTANPFGSTFCYGYQDLIFE
VMPNSHIASVTLYNTAPPRQPAHSWQQHKMQDIRLTVA*

LP10110.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20115-PA 438 GF20115-PA 1..438 1..438 2227 93.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14304-PA 438 GG14304-PA 1..438 1..438 2300 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15057-PA 432 GH15057-PA 1..432 1..438 2141 90.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7083-PA 438 CG7083-PA 1..438 1..438 2295 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12822-PA 431 GI12822-PA 1..431 1..438 2169 91.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24696-PA 436 GL24696-PA 1..436 1..438 2176 91.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20089-PA 436 GA20089-PA 1..436 1..438 2176 91.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25046-PA 446 GM25046-PA 1..445 1..437 2058 87.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14083-PA 444 GD14083-PA 1..443 1..437 2324 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12965-PA 431 GJ12965-PA 1..431 1..438 2173 92 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11944-PA 443 GK11944-PA 1..443 1..438 2210 91.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20732-PA 438 GE20732-PA 1..438 1..438 2294 96.6 Plus

LP10110.hyp Sequence

Translation from 231 to 1547

> LP10110.hyp
MLDLEIVPEISLGCDAWEFVLGMHFSQAIAIIQSQVGIIKGVQVLYSDTT
PLGVDIIINLPQDGVRLIFDPVSQRLKTIEVFNMKLVKLRYFGVYFNSPE
VLPSIEQIEHSFGATHPGVYDAAKQLFALHFRGLSFYFPVDSKLHSGYAH
GLSSLVFLNGASPVVSKMSLYAGSNVLENRVPSLPLSCYHRQMYLESATV
LRTAFGHTKGLKLKLFTEGSGRALEPRRQCFTRELLFGDSCEDVATSLGA
PNRIFFKSEDKMKIHSSSVNRQAQSKRSDIFFNYFTLGIDVLFDARTQTC
KKFILHTNYPGHFNFNMYHRCEFQFLLQADHPSMSDSGHDLVTPTKQEHV
NITAYTKWDAISSALATSERPVVLHRASSTNTANPFGSTFCYGYQDLIFE
VMPNSHIASVTLYNTAPPRQPAHSWQQHKMQDIRLTVA*

LP10110.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7083-PA 438 CG7083-PA 1..438 1..438 2295 100 Plus