Clone LP10120 Report

Search the DGRC for LP10120

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:101
Well:20
Vector:pOT2
Associated Gene/Transcriptmag-RA
Protein status:LP10120.pep: gold
Preliminary Size:1510
Sequenced Size:1479

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5932 2001-01-01 Release 2 assignment
CG5932 2001-07-04 Blastp of sequenced clone
CG5932 2003-01-01 Sim4 clustering to Release 3
CG5932 2008-04-29 Release 5.5 accounting
CG5932 2008-08-15 Release 5.9 accounting
CG5932 2008-12-18 5.12 accounting

Clone Sequence Records

LP10120.complete Sequence

1479 bp (1479 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052062

> LP10120.complete
CCACAATGAATCCAATCTTCTGCGCACTACTGTTCAGCTTGGTGGCGGGT
CTAGTCCTCGCCGAGAAGTCGGACTATTGTCTGAGCGAGATCGTCAAGTC
GGACGAGAGGATCCGTTCGCACGGATATCCCACGGAGACTCACGAGGTGA
CCACCCAGGATGGCTATGTGCTGACCCTGTTCCGCATCCCGTACTCCCAC
AAGCTGAAGAACCAGAACGAGAAGCGACCGCCAATCCTGCTGCAGCACGG
ATTGTTCAGTAACTCGGACTGCTGGCTGTCCTCCGGACCGGACAACTCCC
TGGCCTACCTGCTCGCGGATGCCGGATACGATGTGTGGCTGGGCAATGCC
CGTGGTAACATCTACTCGCGGAACAACATCATCATCTCGCTGAACAGCCA
CAAGTTCTGGCACTTCGACTGGCACGAAATCGGCACCATCGACATCCCCG
CCATGATCGACTACATCCTGGCGGATACCGGCTTCGATCAGATACACTAC
GCCGGACACTCGCAAGGAACCACCGTGTACCTGGTGATGCTTTCCGAGCG
ACCGGAGTACAATGCCCTCATTAAGTCCGGTCATTTGCTGGCTCCATGTG
CCTTCTTCGAGCACGGAACCTCCTTCATCTTCAATGCCCTGGGTCCCCTG
GTGGGTACACCCGGCGGCATCTGGAACCAACTGCTGGTGGACACCGAACT
GATTCCGAACAACAACCTGGTTAACCGATTGGTCGACAACAGTTGCCATC
TATCCAACACGATTTGCAACAACGCCTTCATAATGTTTGCCAATGGTGGA
TACGTTAATGCCAATGCGAGCTCCATGAGCGTCCTGATCGAGACCCATCC
GGCTGGATCCTCTAGCAACCAGGGCATCCACTACCTGCAGCTATGGAAGT
CCCTCAAGTTCCGCCAGTACGACTGGGGCACAAAGAAGAACAACGAGCTG
TATGGCCAGGATCTGCCTCCAGATTACGATCTCAGCAAGATCGTCGCACC
CACCCACTTGTACTCCAGCACCAACGATGCCCTTTGCGGACCCGAAGACG
TCAATACCCTGGTGGAGAACTTCCCGCACCTGACGGAGGACTACCGTGTG
CCCGTCCAGAGTTTCAACCACTTGGACTTCATCATCGCCAAGAACATGAA
GGAGCTGGTCAACGATCCGATCATCGAACGCATTAACTCCTACGAAGGTC
GCTAGAAATCGGCCAATAAAAGAATCCGTAATGCACCGATTTTAACACAT
AGTTTTCGGGCTACGTACCCGAATTTATTGGGGGGATTCAAATGTCCAAG
TCGGCGACAAGTCAAAGAATAAACTTAACCTTCAAATAATAAAATTAGTA
TAGCCTTCCCATGGAAAAACACCCGAAAATAAAGTGCATCTCGTTTGGGA
ATCTTATCTTGTAAAGTGGACAAGCAAATATGCAAGTGCCAATAAAAAGT
ATTGAACAATTAAAAAAAAAAAAAAAAAA

LP10120.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5932-RA 1517 CG5932-RA 57..1517 1..1461 7305 100 Plus
Lip3-RA 1436 Lip3-RA 435..505 297..367 220 87.3 Plus
CG2772-RA 1439 CG2772-RA 576..629 419..472 150 85.1 Plus
CG2772-RA 1439 CG2772-RA 292..347 153..208 145 83.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20449706..20450523 1..818 4075 99.9 Plus
chr3L 24539361 chr3L 20450638..20451281 818..1461 3220 100 Plus
chr3R 27901430 chr3R 9196428..9196498 367..297 205 85.9 Minus
chr2L 23010047 chr2L 22181466..22181537 300..371 195 84.7 Plus
chr3R 27901430 chr3R 21723985..21724045 308..368 185 86.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:54:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20460699..20461516 1..818 4090 100 Plus
3L 28110227 3L 20461631..20462275 818..1462 3225 100 Plus
3R 32079331 3R 13371246..13371316 367..297 220 87.3 Minus
2L 23513712 2L 22182942..22183013 300..371 195 84.7 Plus
3R 32079331 3R 25901020..25901080 308..368 185 86.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20453799..20454616 1..818 4090 100 Plus
3L 28103327 3L 20454731..20455375 818..1462 3225 100 Plus
3R 31820162 3R 13112077..13112147 367..297 220 87.3 Minus
2L 23513712 2L 22182942..22183013 300..371 195 84.7 Plus
2L 23513712 2L 3446684..3446737 419..472 150 85.1 Plus
2L 23513712 2L 3446400..3446455 153..208 145 83.9 Plus
Blast to na_te.dros performed 2019-03-16 22:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cr1a 4470 Cr1a DMCR1A 4470bp 1267..1325 1418..1365 113 69.5 Minus

LP10120.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:12:35 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20449706..20450523 1..818 99 -> Plus
chr3L 20450639..20451281 819..1461 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:40:24 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
CG5932-RA 1..1200 6..1205 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:13:48 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
CG5932-RA 1..1200 6..1205 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:12:48 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
mag-RA 1..1200 6..1205 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:45:05 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
CG5932-RA 1..1200 6..1205 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:11 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
mag-RA 1..1200 6..1205 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:06:38 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
CG5932-RA 1..1461 1..1461 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:13:48 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
CG5932-RA 1..1461 1..1461 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:48 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
mag-RA 17..1477 1..1461 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:45:06 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
CG5932-RA 1..1461 1..1461 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:11 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
mag-RA 17..1477 1..1461 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:12:35 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20460699..20461516 1..818 100 -> Plus
3L 20461632..20462274 819..1461 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:12:35 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20460699..20461516 1..818 100 -> Plus
3L 20461632..20462274 819..1461 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:12:35 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20460699..20461516 1..818 100 -> Plus
3L 20461632..20462274 819..1461 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:48 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20453799..20454616 1..818 100 -> Plus
arm_3L 20454732..20455374 819..1461 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:22:52 Download gff for LP10120.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20453799..20454616 1..818 100 -> Plus
3L 20454732..20455374 819..1461 100   Plus

LP10120.hyp Sequence

Translation from 2 to 1204

> LP10120.hyp
TMNPIFCALLFSLVAGLVLAEKSDYCLSEIVKSDERIRSHGYPTETHEVT
TQDGYVLTLFRIPYSHKLKNQNEKRPPILLQHGLFSNSDCWLSSGPDNSL
AYLLADAGYDVWLGNARGNIYSRNNIIISLNSHKFWHFDWHEIGTIDIPA
MIDYILADTGFDQIHYAGHSQGTTVYLVMLSERPEYNALIKSGHLLAPCA
FFEHGTSFIFNALGPLVGTPGGIWNQLLVDTELIPNNNLVNRLVDNSCHL
SNTICNNAFIMFANGGYVNANASSMSVLIETHPAGSSSNQGIHYLQLWKS
LKFRQYDWGTKKNNELYGQDLPPDYDLSKIVAPTHLYSSTNDALCGPEDV
NTLVENFPHLTEDYRVPVQSFNHLDFIIAKNMKELVNDPIIERINSYEGR
*

LP10120.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
mag-PA 399 CG5932-PA 1..399 2..400 2146 100 Plus
CG2772-PA 416 CG2772-PA 26..410 24..400 894 46.4 Plus
CG31091-PC 424 CG31091-PC 59..424 37..400 830 45.1 Plus
CG31091-PB 424 CG31091-PB 59..424 37..400 830 45.1 Plus
CG31089-PA 421 CG31089-PA 42..415 27..398 813 43.4 Plus

LP10120.pep Sequence

Translation from 5 to 1204

> LP10120.pep
MNPIFCALLFSLVAGLVLAEKSDYCLSEIVKSDERIRSHGYPTETHEVTT
QDGYVLTLFRIPYSHKLKNQNEKRPPILLQHGLFSNSDCWLSSGPDNSLA
YLLADAGYDVWLGNARGNIYSRNNIIISLNSHKFWHFDWHEIGTIDIPAM
IDYILADTGFDQIHYAGHSQGTTVYLVMLSERPEYNALIKSGHLLAPCAF
FEHGTSFIFNALGPLVGTPGGIWNQLLVDTELIPNNNLVNRLVDNSCHLS
NTICNNAFIMFANGGYVNANASSMSVLIETHPAGSSSNQGIHYLQLWKSL
KFRQYDWGTKKNNELYGQDLPPDYDLSKIVAPTHLYSSTNDALCGPEDVN
TLVENFPHLTEDYRVPVQSFNHLDFIIAKNMKELVNDPIIERINSYEGR*

LP10120.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10345-PA 399 GF10345-PA 1..399 1..399 1854 85.2 Plus
Dana\GF16784-PA 423 GF16784-PA 44..419 26..399 848 45 Plus
Dana\GF16783-PA 425 GF16783-PA 44..423 25..399 809 44.6 Plus
Dana\GF17389-PA 394 GF17389-PA 8..394 7..397 799 42.1 Plus
Dana\GF17879-PA 405 GF17879-PA 6..403 6..399 729 39.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16116-PA 399 GG16116-PA 1..399 1..399 2030 93.7 Plus
Dere\GG24941-PA 406 GG24941-PA 26..406 23..399 884 46.9 Plus
Dere\GG11436-PA 428 GG11436-PA 59..424 36..399 804 45.3 Plus
Dere\GG17061-PA 394 GG17061-PA 25..394 29..397 798 42.7 Plus
Dere\GG11437-PA 422 GG11437-PA 43..418 26..399 789 41.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14550-PA 401 GH14550-PA 3..401 7..399 1592 74.9 Plus
Dgri\GH10558-PA 402 GH10558-PA 7..400 8..397 934 47 Plus
Dgri\GH10557-PA 404 GH10557-PA 27..395 23..390 923 48.4 Plus
Dgri\GH23213-PA 422 GH23213-PA 46..418 26..397 852 45.6 Plus
Dgri\GH19444-PA 424 GH19444-PA 54..418 34..397 813 45 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
mag-PA 399 CG5932-PA 1..399 1..399 2146 100 Plus
CG2772-PA 416 CG2772-PA 26..410 23..399 894 46.4 Plus
CG31091-PC 424 CG31091-PC 59..424 36..399 830 45.1 Plus
CG31091-PB 424 CG31091-PB 59..424 36..399 830 45.1 Plus
CG31089-PA 421 CG31089-PA 42..415 26..397 813 43.4 Plus
Lip3-PA 394 CG8823-PA 16..394 15..397 792 42.7 Plus
CG3635-PB 425 CG3635-PB 55..419 36..397 760 42.7 Plus
CG8093-PB 398 CG8093-PB 11..397 12..395 752 41.1 Plus
CG8093-PA 398 CG8093-PA 11..397 12..395 752 41.1 Plus
CG11608-PB 430 CG11608-PB 43..407 27..397 742 40.3 Plus
CG31871-PA 531 CG31871-PA 68..438 21..397 714 38.6 Plus
CG6753-PB 405 CG6753-PB 8..403 4..399 704 37.9 Plus
CG11600-PB 406 CG11600-PB 47..404 36..399 681 38.3 Plus
Lip1-PB 439 CG7279-PB 69..406 33..385 680 39.9 Plus
Lip1-PA 439 CG7279-PA 69..406 33..385 680 39.9 Plus
CG11598-PB 388 CG11598-PB 7..380 4..397 678 36.7 Plus
Lip4-PB 432 CG6113-PB 75..428 36..397 677 39.9 Plus
Lip4-PA 434 CG6113-PA 75..430 36..397 675 40.2 Plus
Lip4-PC 448 CG6113-PC 89..444 36..397 675 40.2 Plus
CG18301-PA 422 CG18301-PA 50..391 36..385 654 38.1 Plus
CG18530-PA 389 CG18530-PA 19..380 30..397 653 37.5 Plus
CG7329-PB 457 CG7329-PB 46..390 36..397 626 37.4 Plus
CG7329-PA 457 CG7329-PA 46..390 36..397 626 37.4 Plus
CG17097-PB 1087 CG17097-PB 730..1083 36..395 573 35.2 Plus
CG18302-PA 406 CG18302-PA 47..396 36..391 551 38.1 Plus
CG11406-PB 396 CG11406-PB 36..385 44..392 540 37 Plus
CG31872-PB 1073 CG31872-PB 720..1072 36..395 537 36 Plus
CG31872-PA 1073 CG31872-PA 720..1072 36..395 537 36 Plus
CG18284-PB 457 CG18284-PB 97..455 30..395 521 34.9 Plus
CG18284-PC 457 CG18284-PC 97..455 30..395 521 34.9 Plus
CG3635-PC 301 CG3635-PC 55..293 36..270 506 44 Plus
CG11406-PA 326 CG11406-PA 2..315 81..392 488 36.9 Plus
Lip2-PB 377 CG17116-PB 12..371 44..399 397 31.2 Plus
Lip2-PA 413 CG17116-PA 48..407 44..399 397 31.2 Plus
CG11406-PD 266 CG11406-PD 2..127 81..206 340 50.8 Plus
CG11406-PC 266 CG11406-PC 2..127 81..206 340 50.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13397-PA 401 GI13397-PA 25..401 26..399 1594 78.2 Plus
Dmoj\GI16796-PA 408 GI16796-PA 28..403 23..397 974 50 Plus
Dmoj\GI24674-PA 420 GI24674-PA 46..418 26..397 839 44.3 Plus
Dmoj\GI22981-PA 422 GI22981-PA 48..417 26..397 829 45 Plus
Dmoj\GI20878-PA 399 GI20878-PA 12..397 12..394 768 42.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12789-PA 399 GL12789-PA 1..399 1..399 1835 84.7 Plus
Dper\GL18612-PA 410 GL18612-PA 30..408 23..399 931 48.2 Plus
Dper\GL22025-PA 425 GL22025-PA 46..419 26..397 868 44.7 Plus
Dper\GL21801-PA 422 GL21801-PA 46..416 26..397 837 43.9 Plus
Dper\GL22024-PA 429 GL22024-PA 59..426 34..399 802 44.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19240-PA 399 GA19240-PA 1..399 1..399 1824 84.2 Plus
Dpse\GA15458-PA 410 GA15458-PA 30..408 23..399 927 48.2 Plus
Dpse\GA15999-PA 425 GA15999-PA 46..419 26..397 869 44.7 Plus
Dpse\GA16001-PA 429 GA16001-PA 59..426 34..399 807 44.1 Plus
Dpse\GA21347-PA 393 GA21347-PA 15..393 15..397 775 42.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22294-PA 362 GM22294-PA 1..362 1..399 1827 87.2 Plus
Dsec\GM11136-PA 416 GM11136-PA 26..409 23..398 869 46.2 Plus
Dsec\GM10276-PA 424 GM10276-PA 8..424 4..399 842 44.4 Plus
Dsec\GM10277-PA 421 GM10277-PA 42..417 26..399 806 42.9 Plus
Dsec\GM25946-PA 394 GM25946-PA 16..394 15..397 804 42.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14888-PA 399 GD14888-PA 1..399 1..399 2084 96.5 Plus
Dsim\GD21246-PA 424 GD21246-PA 59..424 36..399 838 46.3 Plus
Dsim\GD21247-PA 421 GD21247-PA 42..417 26..399 809 43.2 Plus
Dsim\GD20506-PA 394 GD20506-PA 25..394 29..397 797 43 Plus
Dsim\GD25632-PA 398 GD25632-PA 1..396 4..394 756 40.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11522-PA 401 GJ11522-PA 3..401 5..399 1638 77.2 Plus
Dvir\GJ17195-PA 407 GJ17195-PA 25..402 23..397 973 50.3 Plus
Dvir\GJ23893-PA 424 GJ23893-PA 52..418 32..397 845 45.8 Plus
Dvir\GJ24675-PA 422 GJ24675-PA 48..420 26..398 844 45.6 Plus
Dvir\GJ23892-PA 421 GJ23892-PA 51..417 32..397 792 43.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12291-PA 406 GK12291-PA 5..406 4..397 1726 78.9 Plus
Dwil\GK15530-PA 410 GK15530-PA 4..405 5..398 920 46.2 Plus
Dwil\GK12870-PA 427 GK12870-PA 52..419 34..397 829 44.9 Plus
Dwil\GK12869-PA 431 GK12869-PA 60..427 34..397 825 44.7 Plus
Dwil\GK12867-PA 424 GK12867-PA 57..421 39..399 779 45.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19683-PA 399 GE19683-PA 1..399 1..399 2042 94.5 Plus
Dyak\GE18232-PA 410 GE18232-PA 26..403 23..398 887 46.4 Plus
Dyak\GE23631-PA 424 GE23631-PA 59..424 36..399 829 45.7 Plus
Dyak\GE23632-PA 421 GE23632-PA 42..415 26..397 821 43.9 Plus
Dyak\GE24449-PA 394 GE24449-PA 25..394 29..397 799 42.7 Plus