Clone LP10264 Report

Search the DGRC for LP10264

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:102
Well:64
Vector:pOT2
Associated Gene/TranscriptTpnC73F-RA
Protein status:LP10264.pep: gold
Sequenced Size:971

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
TpnC73F-RA 2009-03-13 Manual selection by Elena Potapchuk

Clone Sequence Records

LP10264.complete Sequence

971 bp assembled on 2009-09-22

GenBank Submission: BT099811.1

> LP10264.complete
ACTCCGTGACGATCGCTTCGCAAGATTAGGCTGATCAGACAGATCCCATT
GGCAAAGATATACCCAAAAGTAGCAGCAACATGAGCAGCGTCGATGAAGA
TCTTACACCCGAGCAGATCGCCGTGCTCCAGAAGGCGTTCAACAGCTTCG
ATCACCAGAAGACTGGCTCCATCCCCACCGAGATGGTCGCCGACATACTG
CGCCTGATGGGTCAGCCCTTCGACAAGAAGATCCTGGAGGAACTGATCGA
GGAGGTCGATGAGGACAAGTCCGGTCGCTTGGAATTCGGCGAGTTCGTCC
AGCTGGCTGCCAAGTTCATCGTGGAGGAGGATGCGGAGGCCATGCAGAAG
GAGCTGCGCGAGGCGTTCCGTTTGTACGATAAGCAGGGCAATGGCTTCAT
TCCCACCACCTGCCTGAAGGAGATCCTCAAGGAGCTGGACGACCAGCTGA
CCGAACAGGAGCTGGACATTATGATCGAGGAGATCGATTCCGATGGCTCC
GGTACAGTGGATTTCGATGAATTCATGGAGATGATGACTGGCGAGTAAAT
AAACGCAATGCGTCTGCCACCCACCAACCGCCAACCCACCCTGGAAAACA
CCACCCACTTTCCCACCCTCCCAGAAAAAAAAAACAACACACACATGCAC
ACTCTACACACACACACAGACGCACACGCACACCTGTTGGACACACGTTT
GTTTGCTCCTGTTTGCACACTTGTTTCGCTTTTTATTTGCATTTTGCCCC
AACCATTTTACCATTTTTTTTGTTTTTGTTTCGCGGAGCAAACAAATCCA
CGTACTTCAGTTTGACAATGCCAAACACGAGTAGAAATAGAACTTTTGTA
CTACTTTTTTATACTAAAAGAAGCAACGGAATACTGTGTATGCGAAAAAA
TAAATGTTATGCCATGGCAAAAAAAAAAAATGAAAAAAAAAAACCAAAAA
AAAAAAAAAAAAAAAAAAAAA

LP10264.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC73F-RA 1151 TpnC73F-RA 196..1146 1..951 4755 100 Plus
TpnC73F-RB 2178 TpnC73F-RB 1752..2178 519..945 2135 100 Plus
TpnC47D-RA 912 TpnC47D-RA 227..679 96..548 1530 89.1 Plus
TpnC73F-RB 2178 TpnC73F-RB 101..367 1..267 1335 100 Plus
TpnC73F-RB 2178 TpnC73F-RB 1138..1389 268..519 1260 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17037427..17037853 519..945 2135 100 Plus
chr3L 24539361 chr3L 17036813..17037064 268..519 1260 100 Plus
chr2R 21145070 chr2R 7162043..7162292 519..270 905 90.8 Minus
chr3L 24539361 chr3L 17035805..17035924 93..212 585 99.2 Plus
chr2R 21145070 chr2R 7162353..7162524 267..96 485 85.5 Minus
chr3L 24539361 chr3L 17035641..17035733 1..93 465 100 Plus
chr3L 24539361 chr3L 17035986..17036043 210..267 290 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:54:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17047964..17048396 519..951 2165 100 Plus
3L 28110227 3L 17047350..17047601 268..519 1260 100 Plus
2R 25286936 2R 11274580..11274829 519..270 905 90.8 Minus
3L 28110227 3L 17046341..17046460 93..212 600 100 Plus
2R 25286936 2R 11274890..11275061 267..96 485 85.5 Minus
3L 28110227 3L 17046177..17046269 1..93 465 100 Plus
3L 28110227 3L 17046522..17046579 210..267 290 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17041064..17041496 519..951 2165 100 Plus
3L 28103327 3L 17040450..17040701 268..519 1260 100 Plus
2R 25260384 2R 11275779..11276028 519..270 905 90.8 Minus
3L 28103327 3L 17039441..17039560 93..212 600 100 Plus
2R 25260384 2R 11276089..11276260 267..96 485 85.4 Minus
3L 28103327 3L 17039277..17039369 1..93 465 100 Plus
3L 28103327 3L 17039622..17039679 210..267 290 100 Plus
2R 25260384 2R 11275313..11275342 548..519 150 100 Minus
Blast to na_te.dros performed on 2019-03-16 07:01:34 has no hits.

LP10264.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:02:19 Download gff for LP10264.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17035641..17035732 1..92 100 -> Plus
chr3L 17035805..17035922 93..210 99 -> Plus
chr3L 17035987..17036043 211..267 100 -> Plus
chr3L 17036813..17037064 268..519 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:55:08 Download gff for LP10264.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC73F-RA 1..468 81..548 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:32:48 Download gff for LP10264.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC73F-RA 1..468 81..548 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:34:48 Download gff for LP10264.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC73F-RA 1..468 81..548 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:25:05 Download gff for LP10264.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC73F-RA 1..468 81..548 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-22 13:02:26 Download gff for LP10264.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC73F-RA 14..931 1..918 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:32:48 Download gff for LP10264.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC73F-RA 14..931 1..918 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:48 Download gff for LP10264.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC73F-RA 18..935 1..918 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:25:05 Download gff for LP10264.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC73F-RA 18..935 1..918 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:02:19 Download gff for LP10264.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17046177..17046268 1..92 100 -> Plus
3L 17046341..17046458 93..210 100 -> Plus
3L 17046523..17046579 211..267 100 -> Plus
3L 17047350..17047601 268..519 100 -> Plus
3L 17047965..17048363 520..918 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:02:19 Download gff for LP10264.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17046177..17046268 1..92 100 -> Plus
3L 17046341..17046458 93..210 100 -> Plus
3L 17046523..17046579 211..267 100 -> Plus
3L 17047350..17047601 268..519 100 -> Plus
3L 17047965..17048363 520..918 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:02:19 Download gff for LP10264.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17046177..17046268 1..92 100 -> Plus
3L 17046341..17046458 93..210 100 -> Plus
3L 17046523..17046579 211..267 100 -> Plus
3L 17047350..17047601 268..519 100 -> Plus
3L 17047965..17048363 520..918 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:48 Download gff for LP10264.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17039277..17039368 1..92 100 -> Plus
arm_3L 17039441..17039558 93..210 100 -> Plus
arm_3L 17039623..17039679 211..267 100 -> Plus
arm_3L 17040450..17040701 268..519 100 -> Plus
arm_3L 17041065..17041463 520..918 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:17:16 Download gff for LP10264.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17040450..17040701 268..519 100 -> Plus
3L 17041065..17041463 520..918 100   Plus
3L 17039277..17039368 1..92 100 -> Plus
3L 17039441..17039558 93..210 100 -> Plus
3L 17039623..17039679 211..267 100 -> Plus

LP10264.hyp Sequence

Translation from 80 to 547

> LP10264.hyp
MSSVDEDLTPEQIAVLQKAFNSFDHQKTGSIPTEMVADILRLMGQPFDKK
ILEELIEEVDEDKSGRLEFGEFVQLAAKFIVEEDAEAMQKELREAFRLYD
KQGNGFIPTTCLKEILKELDDQLTEQELDIMIEEIDSDGSGTVDFDEFME
MMTGE*

LP10264.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC73F-PC 155 CG7930-PC 1..155 1..155 781 100 Plus
TpnC73F-PA 155 CG7930-PA 1..155 1..155 781 100 Plus
TpnC47D-PB 155 CG9073-PB 1..155 1..155 739 92.9 Plus
TpnC47D-PA 155 CG9073-PA 1..155 1..155 739 92.9 Plus
TpnC41C-PB 154 CG2981-PB 1..151 4..154 494 63.6 Plus

LP10264.pep Sequence

Translation from 80 to 547

> LP10264.pep
MSSVDEDLTPEQIAVLQKAFNSFDHQKTGSIPTEMVADILRLMGQPFDKK
ILEELIEEVDEDKSGRLEFGEFVQLAAKFIVEEDAEAMQKELREAFRLYD
KQGNGFIPTTCLKEILKELDDQLTEQELDIMIEEIDSDGSGTVDFDEFME
MMTGE*

LP10264.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10103-PA 155 GF10103-PA 1..155 1..155 783 99.4 Plus
Dana\GF12423-PA 155 GF12423-PA 1..155 1..155 737 92.3 Plus
Dana\GF13927-PA 173 GF13927-PA 25..170 8..154 476 63.3 Plus
Dana\GF14383-PA 143 GF14383-PA 3..143 15..155 412 58.2 Plus
Dana\GF13971-PA 161 GF13971-PA 6..161 1..155 410 50.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13604-PA 155 GG13604-PA 1..155 1..155 786 100 Plus
Dere\GG22682-PA 155 GG22682-PA 1..155 1..155 741 92.9 Plus
Dere\GG10878-PA 289 GG10878-PA 135..286 2..154 492 64.7 Plus
Dere\GG25060-PA 143 GG25060-PA 3..143 15..155 409 58.2 Plus
Dere\GG10858-PA 158 GG10858-PA 2..153 4..154 405 51.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16402-PA 155 GH16402-PA 1..155 1..155 783 99.4 Plus
Dgri\GH21939-PA 154 GH21939-PA 3..154 4..155 723 92.8 Plus
Dgri\GH21731-PA 152 GH21731-PA 1..149 6..154 496 65.1 Plus
Dgri\GH21490-PA 143 GH21490-PA 3..143 15..155 400 56.7 Plus
Dgri\GH21732-PA 154 GH21732-PA 9..153 11..154 383 51.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC73F-PC 155 CG7930-PC 1..155 1..155 781 100 Plus
TpnC73F-PA 155 CG7930-PA 1..155 1..155 781 100 Plus
TpnC47D-PB 155 CG9073-PB 1..155 1..155 739 92.9 Plus
TpnC47D-PA 155 CG9073-PA 1..155 1..155 739 92.9 Plus
TpnC41C-PB 154 CG2981-PB 1..151 4..154 494 63.6 Plus
TpnC41C-PA 154 CG2981-PA 1..151 4..154 494 63.6 Plus
TpnC25D-PC 149 CG6514-PC 5..149 11..155 420 57.2 Plus
TpnC25D-PA 149 CG6514-PA 5..149 11..155 420 57.2 Plus
TpnC25D-PB 143 CG6514-PB 3..143 15..155 415 58.2 Plus
TpnC4-PB 153 CG12408-PB 3..153 5..154 411 52.3 Plus
TpnC4-PA 153 CG12408-PA 3..153 5..154 411 52.3 Plus
Cam-PD 149 CG8472-PD 3..149 6..155 309 40.7 Plus
Cam-PC 149 CG8472-PC 3..149 6..155 309 40.7 Plus
Cam-PE 149 CG8472-PE 3..149 6..155 309 40.7 Plus
Cam-PB 149 CG8472-PB 3..149 6..155 309 40.7 Plus
Cam-PA 149 CG8472-PA 3..149 6..155 309 40.7 Plus
Acam-PB 148 CG17769-PB 3..146 7..153 275 38.1 Plus
Acam-PA 148 CG17769-PA 3..146 7..153 275 38.1 Plus
CG11638-PA 387 CG11638-PA 210..355 12..152 244 33.6 Plus
CG31802-PA 186 CG31802-PA 38..180 7..152 228 34.2 Plus
CG17493-PD 182 CG17493-PD 34..176 7..152 223 34.2 Plus
CG17493-PC 182 CG17493-PC 34..176 7..152 223 34.2 Plus
CG17493-PB 182 CG17493-PB 34..176 7..152 223 34.2 Plus
CG31960-PA 148 CG31960-PA 2..146 6..153 222 31.1 Plus
azot-PA 148 CG11165-PA 2..146 6..153 221 34.2 Plus
CG17770-PA 164 CG17770-PA 19..162 7..153 203 33.1 Plus
CG5024-PB 165 CG5024-PB 21..162 8..152 188 29 Plus
CG5024-PA 165 CG5024-PA 21..162 8..152 188 29 Plus
CG30378-PA 148 CG30378-PA 5..146 8..152 180 22.8 Plus
Cam-PD 149 CG8472-PD 1..73 80..152 161 43.8 Plus
Cam-PC 149 CG8472-PC 1..73 80..152 161 43.8 Plus
Cam-PE 149 CG8472-PE 1..73 80..152 161 43.8 Plus
Cam-PB 149 CG8472-PB 1..73 80..152 161 43.8 Plus
Cam-PA 149 CG8472-PA 1..73 80..152 161 43.8 Plus
Eip63F-1-PD 166 CG15855-PD 1..165 4..152 158 23 Plus
CanB2-PB 170 CG11217-PB 18..157 11..152 157 29.3 Plus
CanB2-PA 170 CG11217-PA 18..157 11..152 157 29.3 Plus
Eip63F-1-PC 181 CG15855-PC 21..180 9..152 157 23.8 Plus
Eip63F-1-PA 193 CG15855-PA 33..192 9..152 157 23.8 Plus
Eip63F-1-PB 161 CG15855-PB 8..160 16..152 153 23.5 Plus
CG13898-PA 151 CG13898-PA 1..145 1..148 149 23 Plus
Mlc-c-PB 153 CG3201-PB 19..150 17..152 144 25 Plus
CG13526-PA 154 CG13526-PA 8..150 7..152 141 24 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12482-PA 155 GI12482-PA 1..155 1..155 783 99.4 Plus
Dmoj\GI19647-PA 155 GI19647-PA 1..155 1..155 732 91.6 Plus
Dmoj\GI18874-PA 186 GI18874-PA 29..183 1..154 508 65.2 Plus
Dmoj\GI24238-PA 143 GI24238-PA 3..143 15..155 410 57.4 Plus
Dmoj\GI18875-PA 220 GI18875-PA 13..156 11..153 381 51.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11919-PA 155 GL11919-PA 1..155 1..155 773 97.4 Plus
Dper\GL16748-PA 155 GL16748-PA 1..155 1..155 725 90.3 Plus
Dper\GL11049-PA 207 GL11049-PA 54..204 4..154 496 63.6 Plus
Dper\GL15651-PA 422 GL15651-PA 276..420 11..154 420 54.5 Plus
Dper\GL19565-PA 149 GL19565-PA 5..149 11..155 406 55.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\TpnCIa-PA 155 GA23964-PA 1..155 1..155 773 97.4 Plus
Dpse\TpnCIb-PA 155 GA21520-PA 1..155 1..155 725 90.3 Plus
Dpse\TpnCIIIb-PA 174 GA11615-PA 20..172 3..154 420 52.9 Plus
Dpse\TpnCII-PA 149 GA19654-PA 5..149 11..155 406 55.9 Plus
Dpse\GA24499-PA 149 GA24499-PA 5..147 8..153 290 41.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25686-PA 155 GM25686-PA 1..155 1..155 786 100 Plus
Dsec\GM20459-PA 155 GM20459-PA 1..155 1..155 741 92.9 Plus
Dsec\GM18540-PA 143 GM18540-PA 3..143 15..155 409 58.2 Plus
Dsec\GM16508-PA 155 GM16508-PA 2..153 4..154 406 50.7 Plus
Dsec\GM13554-PA 131 GM13554-PA 3..127 6..131 299 50 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14691-PA 155 GD14691-PA 1..155 1..155 786 100 Plus
Dsim\TpnC47D-PA 155 GD25928-PA 1..155 1..155 741 92.9 Plus
Dsim\GD16679-PA 154 GD16679-PA 3..151 6..154 497 64.4 Plus
Dsim\GD23329-PA 149 GD23329-PA 5..149 11..155 412 57.2 Plus
Dsim\GD10357-PA 155 GD10357-PA 2..153 4..154 406 50.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TpnCIa-PA 158 GJ12386-PA 7..158 4..155 772 100 Plus
Dvir\TpnCIb-PA 155 GJ15012-PA 1..155 1..155 738 92.3 Plus
Dvir\TpnCIIIa-PA 158 GJ21908-PA 4..155 2..154 501 64.7 Plus
Dvir\TpnCII-PA 143 GJ21496-PA 3..143 15..155 408 57.4 Plus
Dvir\TpnCIIIb-PA 189 GJ21909-PA 8..153 11..155 379 50.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15267-PA 155 GK15267-PA 1..155 1..155 780 98.7 Plus
Dwil\GK21627-PA 155 GK21627-PA 1..155 1..155 738 92.3 Plus
Dwil\GK21371-PA 151 GK21371-PA 2..148 8..154 476 61.9 Plus
Dwil\GK21946-PA 557 GK21946-PA 406..555 6..154 415 52.7 Plus
Dwil\GK21094-PA 150 GK21094-PA 6..150 11..155 412 56.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19899-PA 155 GE19899-PA 1..155 1..155 786 100 Plus
Dyak\TpnC47D-PA 155 GE13037-PA 1..155 1..155 741 92.9 Plus
Dyak\GE11315-PA 152 GE11315-PA 1..149 6..154 497 64.4 Plus
Dyak\GE25333-PA 143 GE25333-PA 3..143 15..155 409 58.2 Plus
Dyak\TpnC4-PA 170 GE11292-PA 13..165 3..154 401 50.3 Plus