Clone LP10272 Report

Search the DGRC for LP10272

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:102
Well:72
Vector:pOT2
Associated Gene/TranscriptTmhs-RA
Protein status:LP10272.pep: gold
Preliminary Size:1511
Sequenced Size:1471

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12026 2001-01-01 Release 2 assignment
CG12026 2001-07-04 Blastp of sequenced clone
CG12026 2003-01-01 Sim4 clustering to Release 3
CG12026 2008-04-29 Release 5.5 accounting
CG12026 2008-08-15 Release 5.9 accounting
CG12026 2008-12-18 5.12 accounting

Clone Sequence Records

LP10272.complete Sequence

1471 bp (1471 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052063

> LP10272.complete
ACACATGCAGATGGATGGAAAGTTATCATTTGCCAAATACTCGGTCACCT
CTTGCATCAGAGTTCCCTGACTCAAAAGCATTACTCTATCGCCACGAGGT
CATCAAACCGAAAGCTGGCCAATTTAATAGGATTAAGTAAAGAGCGCCCC
AAAACCGATTTATGACCAGCAGAAACGCAATTGTTCGGGTTGCCCTGATT
GCGTTGGTTCCATCTTTCAATTATTAACCAGCAGACAAAGCAGCATTCCC
CACTCTCTAAAAAATGGGAACGAAGATCGAGTACGTGGACACCACGCACC
TGTACGCCTCCAAGTACATCCGCAACTCCAAGGCGATCGGTGTGCTGTGG
GCCATCTTCACCATTTGCTATGCCATCATCGGCATCGTGGCATTCGTGAC
ACCAGAGTGGATCGGTGATCCGGACAACGATGGAGCTGGTCGCCTGGGCC
TCTGGCAGCAGTGCCAGCGGGACGAGATCTTCGACAACTGCCGTCGACGA
TGGGAGAGCATCTTCGAAGTGCCCACATTCTCGTTTCAGTTGGCCACATT
CTTTATGCTGGGCGCCATAGCACTGGCCTTGCTGACCATATTCTTCTTGG
TTTGTTTGCTGTTTATGAAGTCGACGCGTGTTTTCCACCTTTGCGGTTGG
ATGCAAATCATATCAGCTATTTGCATGATTGTGGCCTGCGCGGCGTTTCC
CTTTGGCTGGAATTCGGACGATTTCCGTAAGATCTGTGGACCGGAAGCGA
ATCGCTTCGAGCTGGGCTTGTGCGGCATCCGCTGGGCTTATCCACTGGCC
ATAATCGGTTGCATAGATGGCGTGGTCTTGGCCACTCTGGCGTTTATCTT
GGCCACGCGGCACGTGCGCCTGCAGCCAGATCCGATATACCAGAACTCGC
TATACAAAGGTGAAATCAACAATGCTTACCTCACAGATGCCATCAGCTTG
GCGGGCTCGAGGAAATCCAACCCACGCATAACTGGCTTGAATTTGCAGCC
CATTTTGCTGGTGGCTCCGCCAAACGAGGATAGCATATCGCAGTTTTCTC
GTTATCACTGAGCACACCATTCAAACAGCCAGGACGCCAACCAATTAAGC
TTAGCACGTGCAAGAACCAGGGGTGAAACTCAGCTTAAAGTTTTCCATAA
ATCGTTCAAACGATTTTTAACCGATTTTCGCCGCAACCATAAGATGAAAC
TATGAAAATGTGTGTGGTATGTGTATTTGAGTGTGAAAGTCAGCGAGTGA
ATGATTTGTATATGCCGCTTAGCCCGACTGAATGCCAACTTGTAGTTGTA
AGATTGGATTTTAAACTATAATTTAACATTTCGTGTGAATAGCTTGTGCC
TAAGTGTATGCTTCGAATAAGTTAAAAGTTAAAAGAGAGTTCCCGAAGCT
CTGCCTGTAAATTATATACCCATAAACAATAAACATGTACAAATATTAAA
CATAAAAAAAAAAAAAAAAAA

LP10272.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12026.a 1461 CG12026.a 1..1457 1..1457 7285 100 Plus
CG12026-RA 1461 CG12026-RA 1..1457 1..1457 7270 99.9 Plus
CG12026.b 1300 CG12026.b 70..1296 231..1457 6135 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1890479..1891024 908..1453 2730 100 Plus
chr3L 24539361 chr3L 1890174..1890422 664..912 1245 100 Plus
chr3L 24539361 chr3L 1889052..1889284 1..233 1165 100 Plus
chr3L 24539361 chr3L 1889336..1889510 231..405 875 100 Plus
chr3L 24539361 chr3L 1889577..1889714 402..539 690 100 Plus
chr3L 24539361 chr3L 1889879..1890014 535..670 665 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:54:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1890917..1891466 908..1457 2750 100 Plus
3L 28110227 3L 1890612..1890860 664..912 1245 100 Plus
3L 28110227 3L 1889490..1889722 1..233 1165 100 Plus
3L 28110227 3L 1889774..1889948 231..405 875 100 Plus
3L 28110227 3L 1890015..1890152 402..539 690 100 Plus
3L 28110227 3L 1890317..1890452 535..670 665 99.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1890917..1891466 908..1457 2750 100 Plus
3L 28103327 3L 1890612..1890860 664..912 1245 100 Plus
3L 28103327 3L 1889490..1889722 1..233 1165 100 Plus
3L 28103327 3L 1889774..1889948 231..405 875 100 Plus
3L 28103327 3L 1890015..1890152 402..539 690 100 Plus
3L 28103327 3L 1890317..1890452 535..670 665 99.2 Plus
Blast to na_te.dros performed on 2019-03-16 06:37:49 has no hits.

LP10272.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:38:48 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1889052..1889285 1..234 99 -> Plus
chr3L 1889340..1889510 235..405 100 -> Plus
chr3L 1889581..1889714 406..539 100 -> Plus
chr3L 1889884..1890010 540..666 100 -> Plus
chr3L 1890177..1890419 667..909 100 -> Plus
chr3L 1890481..1891024 910..1453 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:40:32 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12026-RA 1..798 264..1061 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:13:50 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12026-RA 1..798 264..1061 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:18:57 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
Tmhs-RB 1..798 264..1061 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:45:07 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12026-RA 1..798 264..1061 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:21:49 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
Tmhs-RB 1..798 264..1061 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:06:40 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12026-RA 1..1453 1..1453 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:13:50 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12026-RA 1..1453 1..1453 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:57 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
Tmhs-RA 1..1453 1..1453 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:45:07 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12026-RA 1..1453 1..1453 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:21:49 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
Tmhs-RA 1..1453 1..1453 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:48 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1890615..1890857 667..909 100 -> Plus
3L 1889490..1889723 1..234 99 -> Plus
3L 1889778..1889948 235..405 100 -> Plus
3L 1890019..1890152 406..539 100 -> Plus
3L 1890322..1890448 540..666 100 -> Plus
3L 1890919..1891462 910..1453 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:48 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1890615..1890857 667..909 100 -> Plus
3L 1889490..1889723 1..234 99 -> Plus
3L 1889778..1889948 235..405 100 -> Plus
3L 1890019..1890152 406..539 100 -> Plus
3L 1890322..1890448 540..666 100 -> Plus
3L 1890919..1891462 910..1453 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:48 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1890615..1890857 667..909 100 -> Plus
3L 1889490..1889723 1..234 99 -> Plus
3L 1889778..1889948 235..405 100 -> Plus
3L 1890019..1890152 406..539 100 -> Plus
3L 1890322..1890448 540..666 100 -> Plus
3L 1890919..1891462 910..1453 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:57 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1889490..1889723 1..234 99 -> Plus
arm_3L 1889778..1889948 235..405 100 -> Plus
arm_3L 1890019..1890152 406..539 100 -> Plus
arm_3L 1890322..1890448 540..666 100 -> Plus
arm_3L 1890615..1890857 667..909 100 -> Plus
arm_3L 1890919..1891462 910..1453 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:22:53 Download gff for LP10272.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1889490..1889723 1..234 99 -> Plus
3L 1889778..1889948 235..405 100 -> Plus
3L 1890019..1890152 406..539 100 -> Plus
3L 1890322..1890448 540..666 100 -> Plus
3L 1890615..1890857 667..909 100 -> Plus
3L 1890919..1891462 910..1453 100   Plus

LP10272.pep Sequence

Translation from 263 to 1060

> LP10272.pep
MGTKIEYVDTTHLYASKYIRNSKAIGVLWAIFTICYAIIGIVAFVTPEWI
GDPDNDGAGRLGLWQQCQRDEIFDNCRRRWESIFEVPTFSFQLATFFMLG
AIALALLTIFFLVCLLFMKSTRVFHLCGWMQIISAICMIVACAAFPFGWN
SDDFRKICGPEANRFELGLCGIRWAYPLAIIGCIDGVVLATLAFILATRH
VRLQPDPIYQNSLYKGEINNAYLTDAISLAGSRKSNPRITGLNLQPILLV
APPNEDSISQFSRYH*

LP10272.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24845-PA 265 GF24845-PA 1..265 1..265 1398 98.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14834-PA 265 GG14834-PA 1..265 1..265 1407 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16164-PA 265 GH16164-PA 1..265 1..265 1362 95.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
Tmhs-PA 265 CG12026-PA 1..265 1..265 1414 100 Plus
Tmhs-PB 265 CG12026-PB 1..265 1..265 1414 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13317-PA 265 GI13317-PA 1..265 1..265 1362 95.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25316-PA 265 GL25316-PA 1..265 1..265 1343 93.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11348-PA 265 GA11348-PA 1..265 1..265 1369 95.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14457-PA 265 GM14457-PA 1..265 1..265 1406 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13656-PA 265 GD13656-PA 1..265 1..265 1406 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12087-PA 265 GJ12087-PA 1..265 1..265 1362 95.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20164-PA 265 GK20164-PA 1..265 1..265 1365 96.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21197-PA 265 GE21197-PA 1..265 1..265 1404 99.2 Plus

LP10272.hyp Sequence

Translation from 263 to 1060

> LP10272.hyp
MGTKIEYVDTTHLYASKYIRNSKAIGVLWAIFTICYAIIGIVAFVTPEWI
GDPDNDGAGRLGLWQQCQRDEIFDNCRRRWESIFEVPTFSFQLATFFMLG
AIALALLTIFFLVCLLFMKSTRVFHLCGWMQIISAICMIVACAAFPFGWN
SDDFRKICGPEANRFELGLCGIRWAYPLAIIGCIDGVVLATLAFILATRH
VRLQPDPIYQNSLYKGEINNAYLTDAISLAGSRKSNPRITGLNLQPILLV
APPNEDSISQFSRYH*

LP10272.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Tmhs-PA 265 CG12026-PA 1..265 1..265 1414 100 Plus
Tmhs-PB 265 CG12026-PB 1..265 1..265 1414 100 Plus