Clone LP10490 Report

Search the DGRC for LP10490

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:104
Well:90
Vector:pOT2
Associated Gene/TranscriptVap-33B-RA
Protein status:LP10490.pep: gold
Preliminary Size:1312
Sequenced Size:1526

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10977 2002-01-01 Sim4 clustering to Release 2
CG33523 2003-08-02 Blastp of sequenced clone
CG33523 2008-04-29 Release 5.5 accounting
CG33523 2008-08-15 Release 5.9 accounting
CG33523 2008-12-18 5.12 accounting

Clone Sequence Records

LP10490.complete Sequence

1526 bp (1526 high quality bases) assembled on 2003-08-02

GenBank Submission: BT010032

> LP10490.complete
CGAACTAGTCACAAAAACCTGCAAAGCAATCGCATTTTACGTTTGTTTCT
GTCCTCAACTTGTCGTAATCGTCATGGAAATGTGCAATCTGTAATTGTTA
TTAACAAAGGAGCAAACATAAGTGGAAACTGCATTGTTATCGTACCAATT
GATATTCACTACTCAAAGTTTAAGCAAAAACAACAAAATGCCCAGGGTCA
CCTTTGTCGATTCCGCTCCCATGGTGCTCAAGGAGACCAACATCAACAAG
ATGCACACTCCATCCGAGGGCATGTTGCACATCAATCCCAAGGATTTTGT
CAACTTCAATTCCAAGAATGCGGAAGCCACGATGACCATCAAGTCTATTG
CCACCTCGGCAGTGACGTACAAGATCCAAACCACATCGCCGGAGAAGTTC
CGTGTGCGACCACGTTGCGGCATCATCCAGCCCAATCAGGAGGCCACCAT
CAACATATGGTTGAAGTCGGAGCACAAGCTTAGTGACGACAGCAAGGATA
AGTTCCTGGTGATGGCTATGGTCGCGCCAGGCGGTGAATGCGGTGGCGCC
GATGTGACCGAGCTGTGGCGGAGCAAATCCCCCACATCTGCGGATGTGGA
GCAGCATCGACTGGTCTGCCGCTTCGATGAGAACAAATCAAAAGCGCAGC
TAGATTGCGCAAGCAAGTCCAGTAAGGCCAGCGTGGATTGCAGCAAGAAG
TCCGGTGCTGGCGTAGATCCAGCTACGGCAATGGAGCGTCAGTTGGCATT
CACCCAGAACCTGCAATACGTGACGCTGGCGCTGTTGTTCCTGTTGTTTG
CCGGCTTCGGCTTTCTGATGTACCAGCAGCTCGGCCAGCACGCCGCTACC
TGTCCCAAGGCAACGGCGTATTCGTGCGCTAAGCGCAAATAATATTTACT
TAGCCCGTGCAATTTGACCAGGCAGGAGCTAGACATTGCCGCTCGCGATA
GCCACAACAATAACGAAGACGACTGCGACTGTCCAGAGCTGGAGAACTGT
GCCTGTGCTGTTGATTTGATGAATCTAGGTCTGGACTGTGCCGATACGAT
GGACCAATACGATGGCGAATGCCTCGAGGCACTGATACAGGCGCATCTGC
AGCTGTGCCTCAGCTGTCAGGGCACTGGTGATTGGCAGCTGGGCGGCGTT
GCTGCCGGCGGCCATTTGCTGGGATTCATCGCATTCGCAAGGAAGATGGT
GCGCGTCGTTCTTTCGCTATCGCTGCTGTGCGGCATCTTGTTCGTGAGCT
TCTACCTGGGAAGCAACTACGGCGGAAACTCCACCACCACTACCATAACC
ACCTCCCTAGCCACAGTCGACTCAGGCAGAGGCAATCGTCAGCCGTGTTA
CTACTCGTAGTGAAGCCAAAACCCTCAACTGTGCATGCCAGGGTGGTTCG
ATTTGTTCAGCAGTAAATGCAACTTGTTCACCTCTGTACACGTAATAATC
CATTTTGACCCTTGCCAGGTATGAAAACTACAAATATTAAAGCCTTCTTA
CATACTTCAAAAAAAAAAAAAAAAAA

LP10490.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG33523-RA 2150 CG33523-RA 161..1670 1..1510 7550 100 Plus
CG33523.g 2671 CG33523.g 1002..2316 196..1510 6575 100 Plus
CG33523.e 1709 CG33523.e 216..1459 267..1510 6220 100 Plus
CG33523.e 1709 CG33523.e 23..219 1..197 985 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5921700..5922498 710..1508 3890 99.1 Plus
chr3L 24539361 chr3L 5921298..5921636 372..710 1680 99.7 Plus
chr3L 24539361 chr3L 5919467..5919664 1..198 960 99 Plus
chr3L 24539361 chr3L 5921132..5921236 269..373 525 100 Plus
chr3L 24539361 chr3L 5920819..5920893 196..270 375 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:54:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5929104..5929904 710..1510 4005 100 Plus
3L 28110227 3L 5928702..5929040 372..710 1695 100 Plus
3L 28110227 3L 5926871..5927068 1..198 990 100 Plus
3L 28110227 3L 5928536..5928640 269..373 525 100 Plus
3L 28110227 3L 5928223..5928297 196..270 375 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5922204..5923004 710..1510 4005 100 Plus
3L 28103327 3L 5921802..5922140 372..710 1695 100 Plus
3L 28103327 3L 5919971..5920168 1..198 990 100 Plus
3L 28103327 3L 5921636..5921740 269..373 525 100 Plus
3L 28103327 3L 5921323..5921397 196..270 375 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:15:14 has no hits.

LP10490.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:15:56 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5919467..5919662 1..196 98 -> Plus
chr3L 5920820..5920892 197..269 100 -> Plus
chr3L 5921133..5921236 270..373 100 -> Plus
chr3L 5921300..5921635 374..709 99 -> Plus
chr3L 5921700..5922498 710..1508 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:40:37 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RA 1..705 188..892 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:55:36 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RA 1..705 188..892 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:57:43 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RF 801..1965 196..1360 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:24:39 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RA 1..705 188..892 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:31:16 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RF 801..1965 196..1360 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:41:23 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RA 1..1508 1..1508 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:55:36 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RA 1..1508 1..1508 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:43 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RA 1..1508 1..1508 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:24:39 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RA 1..1508 1..1508 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:31:16 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RA 1..1508 1..1508 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:56 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5926871..5927066 1..196 100 -> Plus
3L 5928224..5928296 197..269 100 -> Plus
3L 5928537..5928640 270..373 100 -> Plus
3L 5928704..5929039 374..709 100 -> Plus
3L 5929104..5929902 710..1508 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:56 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5926871..5927066 1..196 100 -> Plus
3L 5928224..5928296 197..269 100 -> Plus
3L 5928537..5928640 270..373 100 -> Plus
3L 5928704..5929039 374..709 100 -> Plus
3L 5929104..5929902 710..1508 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:56 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5926871..5927066 1..196 100 -> Plus
3L 5928224..5928296 197..269 100 -> Plus
3L 5928537..5928640 270..373 100 -> Plus
3L 5928704..5929039 374..709 100 -> Plus
3L 5929104..5929902 710..1508 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:43 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5919971..5920166 1..196 100 -> Plus
arm_3L 5921324..5921396 197..269 100 -> Plus
arm_3L 5921637..5921740 270..373 100 -> Plus
arm_3L 5921804..5922139 374..709 100 -> Plus
arm_3L 5922204..5923002 710..1508 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:01:53 Download gff for LP10490.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5921804..5922139 374..709 100 -> Plus
3L 5922204..5923002 710..1508 100   Plus
3L 5919971..5920166 1..196 100 -> Plus
3L 5921324..5921396 197..269 100 -> Plus
3L 5921637..5921740 270..373 100 -> Plus

LP10490.pep Sequence

Translation from 187 to 891

> LP10490.pep
MPRVTFVDSAPMVLKETNINKMHTPSEGMLHINPKDFVNFNSKNAEATMT
IKSIATSAVTYKIQTTSPEKFRVRPRCGIIQPNQEATINIWLKSEHKLSD
DSKDKFLVMAMVAPGGECGGADVTELWRSKSPTSADVEQHRLVCRFDENK
SKAQLDCASKSSKASVDCSKKSGAGVDPATAMERQLAFTQNLQYVTLALL
FLLFAGFGFLMYQQLGQHAATCPKATAYSCAKRK*

LP10490.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24005-PA 662 GF24005-PA 268..503 3..228 805 69.1 Plus
Dana\GF23828-PA 176 GF23828-PA 26..142 29..145 184 30.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15302-PA 497 GG15302-PA 267..497 3..234 1039 89.7 Plus
Dere\GG13971-PA 166 GG13971-PA 8..122 30..144 194 32.2 Plus
Dere\GG14468-PA 232 GG14468-PA 1..172 22..191 147 24.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14689-PA 482 GH14689-PA 260..482 8..234 503 45.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG33523-PA 234 CG33523-PA 1..234 1..234 1214 100 Plus
CG33523-PD 498 CG33523-PD 267..498 3..234 1199 99.6 Plus
CG33523-PF 654 CG33523-PF 267..498 3..234 1199 99.6 Plus
CG33523-PC 240 CG33523-PC 10..240 4..234 1197 100 Plus
CG33523-PB 206 CG33523-PB 1..206 29..234 1068 100 Plus
CG6527-PB 166 CG6527-PB 8..141 30..163 186 28.4 Plus
CG6527-PA 166 CG6527-PA 8..141 30..163 186 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13304-PA 504 GI13304-PA 272..504 3..234 500 50.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21079-PA 498 GL21079-PA 269..497 3..234 607 54.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28323-PA 498 GA28323-PA 269..497 3..234 602 54.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14735-PA 497 GM14735-PA 266..497 3..234 1225 97.4 Plus
Dsec\GM24808-PA 162 GM24808-PA 8..141 30..163 192 29.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13915-PA 240 GD13915-PA 10..240 4..234 1217 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12072-PA 487 GJ12072-PA 272..487 3..234 433 44.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16664-PA 638 GK16664-PA 279..429 3..146 432 55.3 Plus
Dwil\GK12362-PA 144 GK12362-PA 3..122 27..145 157 25 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21523-PA 641 GE21523-PA 267..493 3..229 1053 92.5 Plus
Dyak\GE20270-PA 174 GE20270-PA 8..122 30..144 191 31.3 Plus

LP10490.hyp Sequence

Translation from 187 to 891

> LP10490.hyp
MPRVTFVDSAPMVLKETNINKMHTPSEGMLHINPKDFVNFNSKNAEATMT
IKSIATSAVTYKIQTTSPEKFRVRPRCGIIQPNQEATINIWLKSEHKLSD
DSKDKFLVMAMVAPGGECGGADVTELWRSKSPTSADVEQHRLVCRFDENK
SKAQLDCASKSSKASVDCSKKSGAGVDPATAMERQLAFTQNLQYVTLALL
FLLFAGFGFLMYQQLGQHAATCPKATAYSCAKRK*

LP10490.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-PA 234 CG33523-PA 1..234 1..234 1214 100 Plus
Vap-33B-PD 498 CG33523-PD 267..498 3..234 1199 99.6 Plus
Vap-33B-PF 654 CG33523-PF 267..498 3..234 1199 99.6 Plus
Vap-33B-PC 240 CG33523-PC 10..240 4..234 1197 100 Plus
Vap-33B-PB 206 CG33523-PB 1..206 29..234 1068 100 Plus