Clone LP10657 Report

Search the DGRC for LP10657

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:106
Well:57
Vector:pOT2
Associated Gene/TranscriptCG33494-RA
Protein status:LP10657.pep: gold
Sequenced Size:769

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33494 2002-11-16 Blastp of sequenced clone
CG4625 2003-01-01 Sim4 clustering to Release 3
CG33494 2008-04-29 Release 5.5 accounting
CG33494 2008-08-15 Release 5.9 accounting
CG33494 2008-12-18 5.12 accounting

Clone Sequence Records

LP10657.complete Sequence

769 bp (769 high quality bases) assembled on 2002-11-16

GenBank Submission: BT003551

> LP10657.complete
CAACGGGATAGTGCGGTTTTATCGGTTGCTTAAATAAATTGAACACTTTC
CAGAATGCACGCGACTGTCATCTCGGCTTTCGGGATAGTATATCTACTGT
TCCTGTTCCTGGGACATCTTTCTGCTCAAATTACCGTGAGTCCAAGCACG
TTCAATCCTCTTATGGTCGACAGCAAGCCGGAACCCGCCACAAAAAACTC
TTGGCACATTAATAATTATTATCCAAAAAGGTGGTTAATAAATATGAATA
GTTCCGATAAGAAACTCAGACAATCCTACGATTACCGCCCGCTGCACAAT
CCCCTCTATGGGTAACCAGTTCCAAAGTCCACTTAGTCTTTGCTCTCGAA
TCGGTCATCCAAGCCTTTGAGATTACATTTAAATATGTCATGAAATACAT
AGCATGATATACATACATATATAGCATGAGTAACGAAATATGTATATGTG
CAACAAGTTCTGATTGTTAAAGCTACTCGATTCTAATTTAAAATCAAGGT
CAATACAAAATGCTCTTATCAACATATATGAATCACATATGTATTAAGAT
GTAAAATCTCATTTTTAATTAAGCATTAATGTGAAATGAAAGTGCCTTTT
TGCCGTGTGTATTTTTTATATGTAAGGCCCCTTTAAAGTCGGCAGTCAAC
TGTTTGTTTACTGAGTCAGAATCTTGGAGTCGCCATGATCAGTCGCATTG
AAATATTTATTTTTATTCATATAAATTCCATAATAATCAAAACTGGAAAT
TAAAAAAAAAAAAAAAAAA

LP10657.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-RA 1091 CG33494-RA 58..824 1..767 3835 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21316706..21317207 751..250 2495 99.8 Minus
chr3R 27901430 chr3R 21317341..21317546 251..46 1030 100 Minus
chr3R 27901430 chr3R 21318243..21318287 45..1 225 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:54:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25493563..25494080 767..250 2590 100 Minus
3R 32079331 3R 25494215..25494420 251..46 1030 100 Minus
3R 32079331 3R 25495117..25495161 45..1 225 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25234394..25234911 767..250 2590 100 Minus
3R 31820162 3R 25235046..25235251 251..46 1030 100 Minus
3R 31820162 3R 25235948..25235992 45..1 225 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:15:16 has no hits.

LP10657.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:15:58 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21316711..21317205 252..746 99 <- Minus
chr3R 21317341..21317546 46..251 100 <- Minus
chr3R 21318243..21318287 1..45 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:40:44 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 1..261 55..315 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:49:51 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 1..261 55..315 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:57:47 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 1..261 55..315 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:31:59 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 1..261 55..315 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:31:20 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 1..261 55..315 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:00:30 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 1..751 1..751 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:49:51 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 1..751 1..751 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:47 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 1..751 1..751 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:31:59 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 1..751 1..751 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:31:20 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 1..751 1..751 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:58 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25494215..25494420 46..251 100 <- Minus
3R 25495117..25495161 1..45 100   Minus
3R 25493579..25494078 252..751 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:58 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25494215..25494420 46..251 100 <- Minus
3R 25495117..25495161 1..45 100   Minus
3R 25493579..25494078 252..751 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:58 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25494215..25494420 46..251 100 <- Minus
3R 25495117..25495161 1..45 100   Minus
3R 25493579..25494078 252..751 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:47 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21319301..21319800 252..751 100 <- Minus
arm_3R 21319937..21320142 46..251 100 <- Minus
arm_3R 21320839..21320883 1..45 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:11:33 Download gff for LP10657.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25234410..25234909 252..751 100 <- Minus
3R 25235046..25235251 46..251 100 <- Minus
3R 25235948..25235992 1..45 100   Minus

LP10657.pep Sequence

Translation from 54 to 314

> LP10657.pep
MHATVISAFGIVYLLFLFLGHLSAQITVSPSTFNPLMVDSKPEPATKNSW
HINNYYPKRWLINMNSSDKKLRQSYDYRPLHNPLYG*

LP10657.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-PB 86 CG33494-PB 1..86 1..86 465 100 Plus
CG33494-PA 86 CG33494-PA 1..86 1..86 465 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18191-PA 99 GD18191-PA 1..90 1..85 257 60 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10690-PA 131 GE10690-PA 1..80 1..72 143 43.8 Plus

LP10657.hyp Sequence

Translation from 54 to 314

> LP10657.hyp
MHATVISAFGIVYLLFLFLGHLSAQITVSPSTFNPLMVDSKPEPATKNSW
HINNYYPKRWLINMNSSDKKLRQSYDYRPLHNPLYG*

LP10657.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-PB 86 CG33494-PB 1..86 1..86 465 100 Plus
CG33494-PA 86 CG33494-PA 1..86 1..86 465 100 Plus