Clone LP10820 Report

Search the DGRC for LP10820

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:108
Well:20
Vector:pOT2
Associated Gene/TranscriptCG4025-RA
Protein status:LP10820.pep: gold
Preliminary Size:842
Sequenced Size:1242

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4025 2002-01-01 Sim4 clustering to Release 2
CG4025 2002-06-04 Blastp of sequenced clone
CG4025 2003-01-01 Sim4 clustering to Release 3
CG4025 2008-04-29 Release 5.5 accounting
CG4025 2008-08-15 Release 5.9 accounting
CG4025 2008-12-18 5.12 accounting

Clone Sequence Records

LP10820.complete Sequence

1242 bp (1242 high quality bases) assembled on 2002-06-04

GenBank Submission: AY118613

> LP10820.complete
CGCTCCCTTGTTCGTGTTATTGCAGCGCAATTAAATAAGATACGTTAGTT
GTGGCCAGTGCTGCAACTTACCACCACCCGGATACACCATTCCCTAGCGC
GATGTCACAGGTTTACTTGCTGCCGGTGCTCACGTTCCTGATATTCCAGG
TCACCTTTCTTGGCACGTACATCTTCGCCGTGCTGGAGGGGCATGTGGTG
CCCACGGTTCCCTACATCAGCGATGCGGCCACCTACTCGCCGGAAAGCTG
TGTGTTCGGGCAGCTTATCAACATAGGCAGCGTTCTGCTTGGAATTACCA
TCTACGTACGCTACCGTCAGGTGCTGCAGCTTTATGAACACCATCCGGAT
TTGGACGGGTCGGTGCTGCGCCAGAACCGACTAGCCTTGTGGTTCGGACT
GGTGTCCTGCCTGGGCATTAGCTTCGTGGGCAACTTTCAGGAGACGAACG
TGCGGATTGTCCACTTCATCGGAGCCTTCTGCTGCTTCGGCTGCGGCACC
TTGTACTTTTGGATGCAGGCGCTCATCTCGTATCTGATCTTCCCCATGTC
GGGTACCCGCATTAACGCTCACTTGCGGCTGGGCATGTCCGTTGTCTGCA
CGATCCTGTTCATCCTGCTGGCGGTCACCGGCGTGATGTCGCACATCCTC
TTCAAAGGACAGAATCCTCGAAAGTGGTATCCCTCGGACGGCGGCTGGTA
CTTCCACGTGGTCAGCTCTATTTCAGAGTGGGTCATCGCCACCGTCTTCA
GCTTCTTTATCCTCTCCTTCACGAATGAGTTCCGCGACGTGTCGCTGTCG
CATCCCCAGATTGCCCTGATGTCCTATTCGACCACCATCTAGAGCTTACC
TTCATAGATCAGAAGATCAGATAGTAGAGATCAGCGTCTGAAGTAGGCAG
CGGTTCCTTCACCTTCAACATTTTAAGTACAATCTAAGGTGGCAAGAGCA
CGGGCCTCGAGGACGATGTGCTGAGCGGCTGATGTGCACTGCGGCCTCTC
GCCTGCCTTTCCTCTCTTTCCGGTGCTCTTTCTCTGTCGGATTGCTGTGA
TATGTGCAAAGTGTTTCCCAAAGACTGGGATCGGGTAGTTCGAAGTGACA
GAATGCTTTTTGATTGAAGAGTTACATTTATTGTTTACCCGCGTTCGTTT
TTTCAATACACATTAGCATTACTAAATCGGTAGAAATAATCTGTAAATTT
GTAAAATAAAGAGCAATTAAATATAAAAAAAAAAAAAAAAAA

LP10820.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4025-RA 1247 CG4025-RA 24..1247 1..1224 6120 100 Plus
CG16903-RA 2010 CG16903-RA 1844..2010 1226..1060 835 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1971821..1972369 676..1224 2730 99.8 Plus
chrX 22417052 chrX 1971366..1971755 289..678 1950 100 Plus
chrX 22417052 chrX 1970896..1971064 1..169 845 100 Plus
chrX 22417052 chrX 1971132..1971253 167..288 610 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:54:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2077907..2078457 676..1226 2755 100 Plus
X 23542271 X 2077452..2077841 289..678 1950 100 Plus
X 23542271 X 2076982..2077150 1..169 845 100 Plus
X 23542271 X 2077218..2077339 167..288 610 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2086005..2086555 676..1226 2755 100 Plus
X 23527363 X 2085550..2085939 289..678 1950 100 Plus
X 23527363 X 2085080..2085248 1..169 845 100 Plus
X 23527363 X 2085316..2085437 167..288 610 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:56:37 has no hits.

LP10820.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:57:45 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1970896..1971061 1..166 100 -> Plus
chrX 1971132..1971253 167..288 100 -> Plus
chrX 1971366..1971753 289..676 100 -> Plus
chrX 1971822..1972369 677..1224 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:40:50 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 1..741 102..842 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:32:42 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 1..741 102..842 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:41:10 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 1..741 102..842 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:23:23 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 1..741 102..842 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:25:47 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 1..741 102..842 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:03:15 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 1..1224 1..1224 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:32:42 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 1..1224 1..1224 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:41:10 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 17..1240 1..1224 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:23:24 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 1..1224 1..1224 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:25:47 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 17..1240 1..1224 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:57:45 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
X 2076982..2077147 1..166 100 -> Plus
X 2077218..2077339 167..288 100 -> Plus
X 2077452..2077839 289..676 100 -> Plus
X 2077908..2078455 677..1224 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:57:45 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
X 2076982..2077147 1..166 100 -> Plus
X 2077218..2077339 167..288 100 -> Plus
X 2077452..2077839 289..676 100 -> Plus
X 2077908..2078455 677..1224 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:57:45 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
X 2076982..2077147 1..166 100 -> Plus
X 2077218..2077339 167..288 100 -> Plus
X 2077452..2077839 289..676 100 -> Plus
X 2077908..2078455 677..1224 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:41:10 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1971015..1971180 1..166 100 -> Plus
arm_X 1971251..1971372 167..288 100 -> Plus
arm_X 1971485..1971872 289..676 100 -> Plus
arm_X 1971941..1972488 677..1224 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:56:42 Download gff for LP10820.complete
Subject Subject Range Query Range Percent Splice Strand
X 2085550..2085937 289..676 100 -> Plus
X 2086006..2086553 677..1224 100   Plus
X 2085080..2085245 1..166 100 -> Plus
X 2085316..2085437 167..288 100 -> Plus

LP10820.hyp Sequence

Translation from 101 to 841

> LP10820.hyp
MSQVYLLPVLTFLIFQVTFLGTYIFAVLEGHVVPTVPYISDAATYSPESC
VFGQLINIGSVLLGITIYVRYRQVLQLYEHHPDLDGSVLRQNRLALWFGL
VSCLGISFVGNFQETNVRIVHFIGAFCCFGCGTLYFWMQALISYLIFPMS
GTRINAHLRLGMSVVCTILFILLAVTGVMSHILFKGQNPRKWYPSDGGWY
FHVVSSISEWVIATVFSFFILSFTNEFRDVSLSHPQIALMSYSTTI*

LP10820.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4025-PA 246 CG4025-PA 1..246 1..246 1294 100 Plus

LP10820.pep Sequence

Translation from 101 to 841

> LP10820.pep
MSQVYLLPVLTFLIFQVTFLGTYIFAVLEGHVVPTVPYISDAATYSPESC
VFGQLINIGSVLLGITIYVRYRQVLQLYEHHPDLDGSVLRQNRLALWFGL
VSCLGISFVGNFQETNVRIVHFIGAFCCFGCGTLYFWMQALISYLIFPMS
GTRINAHLRLGMSVVCTILFILLAVTGVMSHILFKGQNPRKWYPSDGGWY
FHVVSSISEWVIATVFSFFILSFTNEFRDVSLSHPQIALMSYSTTI*

LP10820.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21936-PA 246 GF21936-PA 1..246 1..246 1186 90.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12904-PA 246 GG12904-PA 1..246 1..246 1259 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24452-PA 246 GH24452-PA 1..246 1..246 1153 85.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4025-PA 246 CG4025-PA 1..246 1..246 1294 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21652-PA 246 GI21652-PA 1..246 1..246 1146 84.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18336-PA 246 GL18336-PA 1..246 1..246 1175 88.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17883-PA 246 GA17883-PA 1..246 1..246 1175 88.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19194-PA 223 GM19194-PA 1..223 1..246 1102 88.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16585-PA 246 GD16585-PA 1..246 1..246 1268 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16890-PA 246 GJ16890-PA 1..246 1..246 1118 82.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10247-PA 246 GK10247-PA 1..246 1..246 1112 83.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16232-PA 246 GE16232-PA 1..246 1..246 1254 96.7 Plus
Dyak\GE11018-PA 246 GE11018-PA 1..246 1..246 1236 95.5 Plus