Clone LP10861 Report

Search the DGRC for LP10861

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:108
Well:61
Vector:pOT2
Associated Gene/TranscriptCG13887-RB
Protein status:LP10861.pep: gold
Preliminary Size:1256
Sequenced Size:1185

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13887 2001-01-01 Release 2 assignment
CG13887 2003-01-01 Sim4 clustering to Release 3
CG13887 2003-02-22 Blastp of sequenced clone
CG13887 2008-04-29 Release 5.5 accounting
CG13887 2008-08-15 Release 5.9 accounting
CG13887 2008-12-18 5.12 accounting

Clone Sequence Records

LP10861.complete Sequence

1185 bp (1185 high quality bases) assembled on 2003-02-22

GenBank Submission: AY069750

> LP10861.complete
TCACTCCGGCCGTAGTTTATAAATAGCCACTAGACCGTCCGTCCCGAATC
CGTAGACTTAGCAGCTAATTTGGACGCATTTCTGCTTACAGGCGGCAGTC
GAAAAAAGCGAAAATCCAAGAAGCGAAAATCGAACGAAAAAGGGAATTAA
TAAAACATTAAAAATGAGTTTGGTGTGGACTTTGATCGCCGGATTTCTCT
ATGCGGAAATCGCACTGGTCCTTCTGCTGGTGCTGCCGGTGCTCACTCCT
TACCGCTGGAACCGGTTCTTCAAGTCCAAATTCCTATCGATGTTGGGACA
ACAGGCGCACATATATTTCCTGCTGATCATGGGAATTCTGGTCATTTTCC
TCCTGGAGGCCATTCGCGAGATGCGCAAGTACTCCGGCTTGCAGCAGTCT
AACGAGGTCCACTTGAACGTGGAGATGCAGCACAGCATGAAGCTGTTCCG
TGCCCAGCGGAACTTCTACATCTCTGGATTCGCCATTTTCCTTGCCCTGG
TCATCCGGCGACTGGTAAACTTGATCTGCACCCAGGCCAATCTCATGGCC
CAGAGCGAGGCTTCCTTCAAGCAGGCACAGAGCGCCACTGCAGCCGCACG
TTCCTTGCTGGAGAACAAGAACACCGAGAAGGCCAAGGAAGCCGGCGAGG
ATACCACTCTCATCGAGCTCAACAAGCTGCGCGAGCGCGTCCAGGAGCTA
ACCTCCGACTTGAATCGCGAAAAGAAGGACAAGGAGGCGGTTAAGTCGCA
GGCGGAGAGCATCAACCGCGAGTACGACCGACTCACCGAGGAGTACAGCA
AGCTGCAGAAGAAGATAACCATCGGCGGAGGCGGAAACAAGGATGATTAA
ACTCACTGGAGCCAAGTCCAACATTTAAATAACGATAAGACTTATAAGCA
TGGCGGTGGGGCAGCGAAAGCAGGCACATTTAAAAGATTATAACGATTTC
AAATCGATAGAAAGCACACACATCTTATTGTTAATCCTCATAGATACAAC
TACATATACCATTTGATAATGATAATGGGGTATATTGATAATGGTCCCTC
AACTCAATGTTCGTTTCGTCCGAAGTTTTGTATTTAATTCGTATGTGTTA
AGTTTTGTTTGCCACAGTAACACACCCAAAAAGCGTCGTGGCTATTAAAA
GAACAACCAAAAAGTAAAAAAAAAAAAAAAAAAAA

LP10861.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-RB 1483 CG13887-RB 135..1300 1..1166 5830 100 Plus
CG13887.c 1195 CG13887.c 86..1195 56..1165 5550 100 Plus
CG13887.d 1406 CG13887.d 102..770 1..669 3345 100 Plus
CG13887.d 1406 CG13887.d 914..1406 666..1158 2465 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 837740..838409 1..667 3270 99.6 Plus
chr3L 24539361 chr3L 839033..839532 666..1165 2485 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:54:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 837958..838624 1..667 3335 100 Plus
3L 28110227 3L 839248..839748 666..1166 2505 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 837958..838624 1..667 3335 100 Plus
3L 28103327 3L 839248..839748 666..1166 2505 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:56:43 has no hits.

LP10861.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:57:48 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 837740..838409 1..667 99 -> Plus
chr3L 839035..839532 668..1165 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:40:54 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RB 1..687 164..850 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:48:38 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RB 1..687 164..850 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:41:15 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RC 1..687 164..850 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:02 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RB 1..687 164..850 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:25:54 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RC 1..687 164..850 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:01:04 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RB 102..1266 1..1165 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:48:38 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RB 102..1266 1..1165 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:41:15 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RB 98..1262 1..1165 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:02 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RB 102..1266 1..1165 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:25:54 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RB 98..1262 1..1165 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:57:48 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
3L 837958..838624 1..667 100 -> Plus
3L 839250..839747 668..1165 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:57:48 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
3L 837958..838624 1..667 100 -> Plus
3L 839250..839747 668..1165 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:57:48 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
3L 837958..838624 1..667 100 -> Plus
3L 839250..839747 668..1165 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:41:15 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 837958..838624 1..667 100 -> Plus
arm_3L 839250..839747 668..1165 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:24 Download gff for LP10861.complete
Subject Subject Range Query Range Percent Splice Strand
3L 837958..838624 1..667 100 -> Plus
3L 839250..839747 668..1165 100   Plus

LP10861.pep Sequence

Translation from 163 to 849

> LP10861.pep
MSLVWTLIAGFLYAEIALVLLLVLPVLTPYRWNRFFKSKFLSMLGQQAHI
YFLLIMGILVIFLLEAIREMRKYSGLQQSNEVHLNVEMQHSMKLFRAQRN
FYISGFAIFLALVIRRLVNLICTQANLMAQSEASFKQAQSATAAARSLLE
NKNTEKAKEAGEDTTLIELNKLRERVQELTSDLNREKKDKEAVKSQAESI
NREYDRLTEEYSKLQKKITIGGGGNKDD*

LP10861.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24779-PA 232 GF24779-PA 1..232 1..228 1000 84.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14739-PA 228 GG14739-PA 1..228 1..228 1088 92.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15423-PA 229 GH15423-PA 1..226 1..227 915 80.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-PE 228 CG13887-PE 1..228 1..228 1128 100 Plus
CG13887-PB 228 CG13887-PB 1..228 1..228 1128 100 Plus
CG13887-PC 228 CG13887-PC 1..228 1..228 1128 100 Plus
CG13887-PD 184 CG13887-PD 1..181 1..181 866 97.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13024-PA 231 GI13024-PA 1..231 1..228 984 81.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16285-PA 231 GL16285-PA 1..217 1..217 967 87.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12600-PA 231 GA12600-PA 1..217 1..217 965 87.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14356-PA 228 GM14356-PA 1..228 1..228 1190 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13575-PA 228 GD13575-PA 1..228 1..228 1190 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12120-PA 230 GJ12120-PA 1..230 1..228 993 82.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10890-PA 228 GK10890-PA 1..228 1..228 976 84.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21102-PA 228 GE21102-PA 1..228 1..228 1109 90.8 Plus

LP10861.hyp Sequence

Translation from 163 to 849

> LP10861.hyp
MSLVWTLIAGFLYAEIALVLLLVLPVLTPYRWNRFFKSKFLSMLGQQAHI
YFLLIMGILVIFLLEAIREMRKYSGLQQSNEVHLNVEMQHSMKLFRAQRN
FYISGFAIFLALVIRRLVNLICTQANLMAQSEASFKQAQSATAAARSLLE
NKNTEKAKEAGEDTTLIELNKLRERVQELTSDLNREKKDKEAVKSQAESI
NREYDRLTEEYSKLQKKITIGGGGNKDD*

LP10861.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-PE 228 CG13887-PE 1..228 1..228 1128 100 Plus
CG13887-PB 228 CG13887-PB 1..228 1..228 1128 100 Plus
CG13887-PC 228 CG13887-PC 1..228 1..228 1128 100 Plus
CG13887-PD 184 CG13887-PD 1..181 1..181 866 97.2 Plus