Clone LP10922 Report

Search the DGRC for LP10922

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:109
Well:22
Vector:pOT2
Associated Gene/TranscriptCG5618-RA
Protein status:LP10922.pep: gold
Preliminary Size:1770
Sequenced Size:1736

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5618 2001-01-01 Release 2 assignment
CG5618 2001-10-10 Blastp of sequenced clone
CG5618 2003-01-01 Sim4 clustering to Release 3
CG5618 2008-04-29 Release 5.5 accounting
CG5618 2008-08-15 Release 5.9 accounting
CG5618 2008-12-18 5.12 accounting

Clone Sequence Records

LP10922.complete Sequence

1736 bp (1736 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061560

> LP10922.complete
GAAGAGGTTCGGATCTCGAAAGCCAAAAATAATCAGCCTTTTACTGGCCA
ATTGAGATACGGAAACTTCTACCGACCGAGTGTAGTATGGCTGAATCAGT
GGATGGAGCAGAGACTGTTGACCAGATTCGCGATGGCCTCATGGACGACT
GGAAGATCCTGGAGAACGTATTCCACCTTCTCCGGAAGGAGGATACCTTC
TGCGTGGATCCCCAGAAATGGGACAAGCAGAAGATAGTCCCCTTTTTGCA
GCCAGACAAACTTAAGGAACTGATTAACCTGAAGGTTCGAGAGACGGAAA
ACTGCTCGCTCGCGGAGATCGAGGAGCTGTGCCAGCAGGTGATCCATTAC
TCTGTGAAAACCTCGCACGGCCGCTTCCACAATCAGCTCTTTGGCCAGCT
GGACCCGTTTGGACTGGCAGGAGCCCTGGTCACCGAGGCCATGAACGGCA
GCACATACACCTACGAAGTTGCGCCCGTGTTTAGCTTGATCGAAACTGAG
GTGATCGCGACCATCTGCAAGTTAGCGGGATACAAGGAAGGCGATGGCAT
CTTTGCGCCCGGTGGCTCCACCTCCAACATGTACGGCATGGTTCTGGCCC
GCTATAAGATCGCGCCCGAGGTGAAGACGTCTGGAATGTTTGGAATGCGA
CCGCTGGTGCTCTTTACCTCCGACGAGTCGCACTACAGCTTCGTGAAGGC
GGCCAACTGGCTGGGATTGGGCAGCTACAACTGTGTGTCGGTGAGGACCA
ATGAGCGGGGTCAGATGCTGTTGGACGACCTGGAGGCGAAGATCGCAGAG
GCAAAGGCACGTGGCGGTGAACCGTTCTTTGTCAACTGTACTGCAGGCAC
CACTGTGTTGGGTGCCTTTGATGATATCAATGGTGCGGCGGATGTGACGG
AACGACATGGTCTGTGGCTCCATGTGGACGCCTGTCTGGGAGGCGCTGCA
CTACTCTCCGCCAAGAACCGATCGCTCATTGCCGGCCTCGAGCGGGCGAA
TTCGTTTTCCTGGAATCCGCACAAAACCATCGGCGCTCCATTGCAGTGTT
CACTCTTTTTGACCAGGGAATCTGGCCGTCTGCTGGAAAGATGCAACAGC
ACCGAGGCGCACTATTTGTTCCAGCAGGACAAGTTCTATGATGTATCCTA
CGATACGGGAAACAAGAGTGTCCAGTGCGGCCGCAAGATCGACGCTTTCA
AGTTCTGGCTAATGCTTAAGGCTCGCGGATATGGAAAGTATGGACTCATG
GTGGACCACGCCATCCACATCGCCAGGTTGCTGGAAGGCAAGCTGCGCCA
GCGTGGAGATCGCTTTAGACTGGTGATCCCGGAGCACGAGTACTCCAATG
TCTGCTTTTGGTTCATTCCGAAAGCAATGAGGGTGTCCAGCGAGGAGGAG
ACGCCTGAATGGTGGAGTCGACTTTACACTGTGGCCCCGAAAATTAAGGA
GCAAATGGCCCACAGCGGCACTTTGATGATTGGTTACTCGCCTCTTAAAG
CTAAAAATCTGGGCAACTTCTTTCGCATGGTCTTCACTTGTTTTCCCATC
CTGAAAAGCAAAGAGTTGGACTTCATTTTGGACGAAATTGAGAGATTGGG
CGAGAAAATTGTGCTTTGAATTATTTTCTATGTGAATTAAGCTAATTAAT
GGAAATCGTTCAATTGTACATTTCATTGTAGTTATTACTTTGTGATAAAA
AATACGCCTTTATTATGTAAAAAAAAAAAAAAAAAA

LP10922.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5618-RA 1963 CG5618-RA 190..1910 1..1721 8605 100 Plus
CG5618.e 2734 CG5618.e 961..2681 1..1721 8605 100 Plus
CG5618.f 2177 CG5618.f 404..2124 1..1721 8605 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20344364..20345341 455..1432 4875 99.9 Plus
chr3L 24539361 chr3L 20345404..20345691 1431..1718 1425 99.7 Plus
chr3L 24539361 chr3L 20343202..20343467 2..267 1330 100 Plus
chr3L 24539361 chr3L 20343860..20344049 265..454 950 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:54:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20355305..20356282 455..1432 4890 100 Plus
3L 28110227 3L 20356345..20356635 1431..1721 1455 100 Plus
3L 28110227 3L 20354140..20354406 1..267 1335 100 Plus
3L 28110227 3L 20354798..20354987 265..454 950 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20348405..20349382 455..1432 4890 100 Plus
3L 28103327 3L 20349445..20349735 1431..1721 1455 100 Plus
3L 28103327 3L 20347240..20347506 1..267 1335 100 Plus
3L 28103327 3L 20347898..20348087 265..454 950 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:29:14 has no hits.

LP10922.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:30:14 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20343200..20343466 1..266 99 -> Plus
chr3L 20343862..20344049 267..454 100 -> Plus
chr3L 20344364..20345339 455..1430 99 -> Plus
chr3L 20345404..20345691 1431..1718 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:40:59 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 1..1533 87..1619 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:50:58 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 1..1533 87..1619 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:39:56 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 1..1533 87..1619 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:20:05 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 1..1533 87..1619 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:11 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 1..1533 87..1619 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:35:43 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 189..1906 1..1718 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:50:58 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 189..1906 1..1718 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:39:56 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 221..1938 1..1718 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:20:05 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 189..1906 1..1718 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:11 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 221..1938 1..1718 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:14 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20354140..20354405 1..266 100 -> Plus
3L 20354800..20354987 267..454 100 -> Plus
3L 20355305..20356280 455..1430 100 -> Plus
3L 20356345..20356632 1431..1718 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:14 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20354140..20354405 1..266 100 -> Plus
3L 20354800..20354987 267..454 100 -> Plus
3L 20355305..20356280 455..1430 100 -> Plus
3L 20356345..20356632 1431..1718 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:14 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20354140..20354405 1..266 100 -> Plus
3L 20354800..20354987 267..454 100 -> Plus
3L 20355305..20356280 455..1430 100 -> Plus
3L 20356345..20356632 1431..1718 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:39:56 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20347240..20347505 1..266 100 -> Plus
arm_3L 20347900..20348087 267..454 100 -> Plus
arm_3L 20348405..20349380 455..1430 100 -> Plus
arm_3L 20349445..20349732 1431..1718 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:56:45 Download gff for LP10922.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20347900..20348087 267..454 100 -> Plus
3L 20347240..20347505 1..266 100 -> Plus
3L 20348405..20349380 455..1430 100 -> Plus
3L 20349445..20349732 1431..1718 100   Plus

LP10922.pep Sequence

Translation from 86 to 1618

> LP10922.pep
MAESVDGAETVDQIRDGLMDDWKILENVFHLLRKEDTFCVDPQKWDKQKI
VPFLQPDKLKELINLKVRETENCSLAEIEELCQQVIHYSVKTSHGRFHNQ
LFGQLDPFGLAGALVTEAMNGSTYTYEVAPVFSLIETEVIATICKLAGYK
EGDGIFAPGGSTSNMYGMVLARYKIAPEVKTSGMFGMRPLVLFTSDESHY
SFVKAANWLGLGSYNCVSVRTNERGQMLLDDLEAKIAEAKARGGEPFFVN
CTAGTTVLGAFDDINGAADVTERHGLWLHVDACLGGAALLSAKNRSLIAG
LERANSFSWNPHKTIGAPLQCSLFLTRESGRLLERCNSTEAHYLFQQDKF
YDVSYDTGNKSVQCGRKIDAFKFWLMLKARGYGKYGLMVDHAIHIARLLE
GKLRQRGDRFRLVIPEHEYSNVCFWFIPKAMRVSSEEETPEWWSRLYTVA
PKIKEQMAHSGTLMIGYSPLKAKNLGNFFRMVFTCFPILKSKELDFILDE
IERLGEKIVL*

LP10922.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10330-PA 510 GF10330-PA 1..510 1..510 2404 83.9 Plus
Dana\GF14260-PA 578 GF14260-PA 124..578 49..508 1059 43.9 Plus
Dana\GF24407-PA 510 GF24407-PA 56..510 48..508 960 42.5 Plus
Dana\GF13800-PA 637 GF13800-PA 25..400 46..412 250 24.4 Plus
Dana\GF15210-PA 510 GF15210-PA 61..443 47..424 241 24.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16103-PA 510 GG16103-PA 1..510 1..510 2613 93.5 Plus
Dere\GG23885-PA 572 GG23885-PA 118..572 49..508 1080 44.5 Plus
Dere\GG14223-PA 510 GG14223-PA 56..510 48..508 963 42.8 Plus
Dere\GG10812-PA 637 GG10812-PA 25..400 46..412 244 24.1 Plus
Dere\GG21650-PA 510 GG21650-PA 218..443 190..424 236 29.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16827-PA 511 GH16827-PA 12..507 11..506 2053 72.2 Plus
Dgri\GH11117-PA 588 GH11117-PA 134..588 49..508 1084 44.9 Plus
Dgri\GH17003-PA 510 GH17003-PA 56..510 48..508 965 43.2 Plus
Dgri\GH20148-PA 588 GH20148-PA 15..409 36..424 250 25.6 Plus
Dgri\GH13483-PA 516 GH13483-PA 61..444 47..424 244 24.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5618-PA 510 CG5618-PA 1..510 1..510 2691 100 Plus
CG5618-PE 346 CG5618-PE 1..346 165..510 1830 100 Plus
CG5618-PD 346 CG5618-PD 1..346 165..510 1830 100 Plus
b-PC 514 CG7811-PC 60..514 49..508 1044 44.5 Plus
b-PB 575 CG7811-PB 121..575 49..508 1044 44.5 Plus
b-PA 575 CG7811-PA 121..575 49..508 1044 44.5 Plus
Gad1-PD 510 CG14994-PD 56..510 48..508 944 42.8 Plus
Gad1-PC 510 CG14994-PC 56..510 48..508 944 42.8 Plus
Gad1-PA 510 CG14994-PA 56..510 48..508 944 42.8 Plus
Gad1-PB 510 CG14994-PB 56..510 48..508 944 42.8 Plus
Ddc-PD 475 CG10697-PD 26..408 47..424 237 24.9 Plus
Ddc-PB 475 CG10697-PB 26..408 47..424 237 24.9 Plus
Ddc-PC 510 CG10697-PC 61..443 47..424 237 24.9 Plus
Tdc2-PA 637 CG30446-PA 25..411 46..424 232 23.9 Plus
Tdc1-PA 587 CG30445-PA 15..409 36..424 231 24.3 Plus
amd-PA 510 CG10501-PA 140..468 152..502 222 26.9 Plus
amd-PB 510 CG10501-PB 140..468 152..502 222 26.9 Plus
Hdc-PC 619 CG3454-PC 89..404 110..417 220 26.5 Plus
Hdc-PD 847 CG3454-PD 89..404 110..417 220 26.5 Plus
Hdc-PB 847 CG3454-PB 89..404 110..417 220 26.5 Plus
Hdc-PA 847 CG3454-PA 89..404 110..417 220 26.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11920-PA 507 GI11920-PA 3..506 2..506 2084 72.9 Plus
Dmoj\GI18241-PA 580 GI18241-PA 126..580 49..508 1077 44.7 Plus
Dmoj\GI11417-PA 510 GI11417-PA 56..510 48..508 970 43.2 Plus
Dmoj\GI20239-PA 583 GI20239-PA 15..409 36..424 239 25.6 Plus
Dmoj\GI17235-PA 516 GI17235-PA 62..444 48..424 236 23.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25133-PA 506 GL25133-PA 1..505 5..509 2349 83.6 Plus
Dper\GL21233-PA 589 GL21233-PA 135..589 49..508 1072 44.5 Plus
Dper\GL16767-PA 340 GL16767-PA 55..326 47..317 611 45.1 Plus
Dper\GL10988-PA 635 GL10988-PA 17..400 38..412 248 23.7 Plus
Dper\GL10989-PA 593 GL10989-PA 15..409 36..424 238 25.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19009-PA 506 GA19009-PA 1..505 5..509 2354 83.6 Plus
Dpse\GA20603-PA 589 GA20603-PA 135..589 49..508 1065 44.3 Plus
Dpse\Gad1-PA 510 GA13411-PA 56..510 48..508 966 43 Plus
Dpse\GA15851-PA 635 GA15851-PA 17..400 38..412 247 23.7 Plus
Dpse\GA15850-PA 593 GA15850-PA 15..409 36..424 238 25.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22279-PA 510 GM22279-PA 1..510 1..510 2674 96.9 Plus
Dsec\GM15264-PA 576 GM15264-PA 122..576 49..508 1079 44.3 Plus
Dsec\GM14017-PA 510 GM14017-PA 56..510 48..508 963 42.8 Plus
Dsec\GM17029-PA 510 GM17029-PA 61..402 47..381 237 24.8 Plus
Dsec\GM20862-PA 587 GM20862-PA 15..409 36..424 237 25.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14877-PA 510 GD14877-PA 1..510 1..510 2698 98 Plus
Dsim\GD23928-PA 576 GD23928-PA 122..576 49..508 1075 44.1 Plus
Dsim\GD13295-PA 580 GD13295-PA 126..580 48..508 964 42.8 Plus
Dsim\GD10312-PA 416 GD10312-PA 25..400 46..412 249 23.9 Plus
Dsim\Ddc-PA 510 GD21778-PA 61..443 47..424 241 24.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13795-PA 508 GJ13795-PA 1..508 1..508 2100 73.3 Plus
Dvir\GJ18147-PA 586 GJ18147-PA 132..586 49..508 1069 44.7 Plus
Dvir\GJ13613-PA 510 GJ13613-PA 56..510 48..508 967 42.8 Plus
Dvir\Ddc-PA 504 GJ17995-PA 50..432 48..424 246 25.8 Plus
Dvir\GJ20191-PA 582 GJ20191-PA 15..409 36..424 245 25.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16953-PA 513 GK16953-PA 3..513 2..510 2183 78.3 Plus
Dwil\GK24391-PA 583 GK24391-PA 129..583 49..508 1071 44.9 Plus
Dwil\GK13724-PA 510 GK13724-PA 56..510 48..508 973 42.8 Plus
Dwil\Ddc-PA 511 GK24237-PA 63..444 48..424 255 25.2 Plus
Dwil\GK23145-PA 641 GK23145-PA 25..411 46..424 255 24.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19668-PA 510 GE19668-PA 1..510 1..510 2624 94.1 Plus
Dyak\GE23006-PA 510 GE23006-PA 1..510 1..510 2620 93.9 Plus
Dyak\GE18686-PA 570 GE18686-PA 116..570 49..508 1073 44.1 Plus
Dyak\GE20651-PA 510 GE20651-PA 56..510 48..508 963 42.8 Plus
Dyak\GE24598-PA 632 GE24598-PA 25..400 46..412 245 24.1 Plus

LP10922.hyp Sequence

Translation from 86 to 1618

> LP10922.hyp
MAESVDGAETVDQIRDGLMDDWKILENVFHLLRKEDTFCVDPQKWDKQKI
VPFLQPDKLKELINLKVRETENCSLAEIEELCQQVIHYSVKTSHGRFHNQ
LFGQLDPFGLAGALVTEAMNGSTYTYEVAPVFSLIETEVIATICKLAGYK
EGDGIFAPGGSTSNMYGMVLARYKIAPEVKTSGMFGMRPLVLFTSDESHY
SFVKAANWLGLGSYNCVSVRTNERGQMLLDDLEAKIAEAKARGGEPFFVN
CTAGTTVLGAFDDINGAADVTERHGLWLHVDACLGGAALLSAKNRSLIAG
LERANSFSWNPHKTIGAPLQCSLFLTRESGRLLERCNSTEAHYLFQQDKF
YDVSYDTGNKSVQCGRKIDAFKFWLMLKARGYGKYGLMVDHAIHIARLLE
GKLRQRGDRFRLVIPEHEYSNVCFWFIPKAMRVSSEEETPEWWSRLYTVA
PKIKEQMAHSGTLMIGYSPLKAKNLGNFFRMVFTCFPILKSKELDFILDE
IERLGEKIVL*

LP10922.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5618-PA 510 CG5618-PA 1..510 1..510 2691 100 Plus
CG5618-PE 346 CG5618-PE 1..346 165..510 1830 100 Plus
CG5618-PD 346 CG5618-PD 1..346 165..510 1830 100 Plus
b-PC 514 CG7811-PC 60..514 49..508 1044 44.5 Plus
b-PB 575 CG7811-PB 121..575 49..508 1044 44.5 Plus