Clone LP11089 Report

Search the DGRC for LP11089

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:110
Well:89
Vector:pOT2
Associated Gene/Transcriptb-RA
Protein status:LP11089.pep: gold
Preliminary Size:2208
Sequenced Size:2108

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7811 2001-01-01 Release 2 assignment
CG7811 2001-11-09 Blastp of sequenced clone
CG7811 2003-01-01 Sim4 clustering to Release 3
b 2008-04-29 Release 5.5 accounting
b 2008-08-15 Release 5.9 accounting
b 2008-12-18 5.12 accounting

Clone Sequence Records

LP11089.complete Sequence

2108 bp (2108 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069752

> LP11089.complete
TCGTCGAGCTTTTATAAAGCGGCAACAACATCGCCTGTTCACTCAGTTCA
CACGGAATCACTGTCAAGTGCAATCTGCAGCAGTAGCAGCACCAGCACCA
GGAACAGTACCATCTAGTACATCGGAAATCTAGAGCGCTAGCCAAGACAT
TTACAGTATAAACCGCAGACGAGAGCCAATAAAATGCTGGCCAGCGAGAA
CTTTCCCACACATCACTTCAAGGAATCTATATTTAAGCCGTACAGTACGA
CGAGTGGCGATGATTTGGCAAGCGTTAGCCCATTGACAGCGACGGCAGCG
TTGGTGGCGTCCACGTCGTCACCGGCTGATTCCACCTCCACAGTTGCATT
CGAGCAGGCCAGCAAAATGTTGGCCAACGCCGCCAACAATAATAATAATA
ATAATAACAACATCACGAGCACCAAGGATGATCTATCCAGCTTTGTGGCC
AGCCATCCGGCGGCAGAGTTCGAGGGCTTCATCCGCGCTTGCGTCGACGA
GATCATCAAGCTGGCCGTCTTCCAGGGCACCAATCGCTCCTCGAAGGTCG
TCGAGTGGCACGAGCCAGCTGAGCTGCGACAGCTCTTTGACTTCCAGCTG
CGGGAGCAGGGCGAATCGCAGGACAAGCTGCGCGAGCTGCTGCGGGAAAC
GATTCGATTCTCCGTGAAGACAGGACATCCGTACTTCATCAATCAGTTGT
ACTCGGGTGTGGATCCATACGCGCTGGTAGGTCAATGGCTCACCGATGCC
CTCAATCCCAGCGTGTACACGTACGAGGTGGCTCCACTCTTTACGCTGAT
GGAGGAGCAGGTGTTGGCCGAGATGCGACGCATTGTGGGCTTCCCCAATG
GCGGCCAGGGTGATGGCATCTTCTGTCCCGGCGGCTCGATAGCCAACGGT
TATGCAATCAGCTGCGCCCGCTACAGACACTCGCCCGAGTCCAAGAAAAA
CGGACTCTTTAATGCCAAGCCGCTGATTATCTTCACCTCGGAGGACGCGC
ACTACTCCGTGGAGAAGCTGGCCATGTTCATGGGCTTCGGCAGCGATCAT
GTGCGCAAGATAGCCACCAACGAGGTGGGCAAGATGCGGCTGAGCGACCT
GGAGAAACAGGTGAAGCTGTGCCTGGAGAACGGCTGGCAGCCGCTGATGG
TATCGGCCACAGCGGGTACCACTGTGCTGGGCGCCTTCGATGATCTGGCT
GGAATCTCGGAGGTGTGCAAGAAGTACAACATGTGGATGCACGTGGATGC
GGCTTGGGGTGGCGGTGCGCTCATGTCCAAGAAGTATCGCCATCTGCTCA
ATGGCATCGAACGGGCTGATTCGGTCACTTGGAATCCACACAAGCTGCTG
GCTGCCTCGCAACAGTGTTCCACCTTCCTGACGCGTCACCAGCAGGTGCT
GGCCCAGTGCCATTCGACCAATGCGACATACTTGTTCCAGAAGGACAAGT
TCTATGACACATCCTTCGACACCGGCGACAAGCACATCCAGTGCGGCCGA
CGAGCGGATGTCTTCAAGTTCTGGTTCATGTGGAAGGCGAAGGGCACCCA
GGGTCTGGAGGCGCATGTCGAGAAGGTCTTCCGCATGGCCGAGTTCTTCA
CGGCCAAGGTGAGGGAGCGTCCTGGATTCGAGCTCGTCCTCGAGAGTCCC
GAGTGCACCAACATTAGCTTCTGGTATGTGCCGCCCGGTCTGCGGGAAAT
GGAGCGCAATCGCGAGTTCTACGACCGTCTGCATAAGGTGGCGCCGAAGG
TCAAGGAGGGCATGATCAAGAAGGGCTCCATGATGATCACGTACCAGCCG
TTGCGCCAGCTGCCCAACTTCTTTCGCCTGGTGCTGCAGAACTCCTGCCT
GGAGGAGTCGGACATGGTCTACTTTCTGGACGAGATCGAATCGCTCGCCC
AAAACTTGTAAACGGTGACGCGGCGATGGCATGTTATGAGGTTAGGTGTT
GACAACATTCTCTTTAGGCTTACGCCGATTGTATCTTCTAGTGTATGGTT
AACTAATACTACTCACGTTTGTATATTTTTCTGGATGTTAAGTATTACCA
AAAACAAAGAACAAAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

LP11089.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
b-RA 2211 b-RA 52..2123 1..2071 10320 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13819946..13820891 1..945 4665 99.8 Plus
chr2L 23010047 chr2L 13821856..13822613 1313..2070 3790 100 Plus
chr2L 23010047 chr2L 13821423..13821793 944..1314 1855 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:55:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13821203..13822148 1..945 4680 99.9 Plus
2L 23513712 2L 13823113..13823871 1313..2071 3795 100 Plus
2L 23513712 2L 13822680..13823050 944..1314 1855 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13821203..13822148 1..945 4690 99.8 Plus
2L 23513712 2L 13823113..13823871 1313..2071 3795 100 Plus
2L 23513712 2L 13822680..13823050 944..1314 1855 100 Plus
Blast to na_te.dros performed 2019-03-16 20:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 4302..4408 478..593 145 62.9 Plus

LP11089.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:50:57 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13819946..13820891 1..945 97 -> Plus
chr2L 13821425..13821792 946..1313 100 -> Plus
chr2L 13821857..13822592 1314..2049 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:41:10 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
b-RA 1..1728 184..1911 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:32:36 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
b-RA 1..1728 184..1911 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:29:11 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
b-RA 1..1728 184..1911 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:15 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
b-RA 1..1728 184..1911 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:03 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
b-RA 1..1728 184..1911 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:24 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
b-RA 1..2050 1..2049 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:32:36 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
b-RA 1..2050 1..2049 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:11 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
b-RA 1..2005 45..2049 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:15 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
b-RA 1..2050 1..2049 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:03 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
b-RA 1..2005 45..2049 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:50:57 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13821203..13822148 1..945 99 -> Plus
2L 13822682..13823049 946..1313 100 -> Plus
2L 13823114..13823849 1314..2049 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:50:57 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13821203..13822148 1..945 99 -> Plus
2L 13822682..13823049 946..1313 100 -> Plus
2L 13823114..13823849 1314..2049 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:50:57 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13821203..13822148 1..945 99 -> Plus
2L 13822682..13823049 946..1313 100 -> Plus
2L 13823114..13823849 1314..2049 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:11 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13822682..13823049 946..1313 100 -> Plus
arm_2L 13821203..13822148 1..945 99 -> Plus
arm_2L 13823114..13823849 1314..2049 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:36:54 Download gff for LP11089.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13821203..13822148 1..945 99 -> Plus
2L 13822682..13823049 946..1313 100 -> Plus
2L 13823114..13823849 1314..2049 100   Plus

LP11089.pep Sequence

Translation from 183 to 1910

> LP11089.pep
MLASENFPTHHFKESIFKPYSTTSGDDLASVSPLTATAALVASTSSPADS
TSTVAFEQASKMLANAANNNNNNNNNITSTKDDLSSFVASHPAAEFEGFI
RACVDEIIKLAVFQGTNRSSKVVEWHEPAELRQLFDFQLREQGESQDKLR
ELLRETIRFSVKTGHPYFINQLYSGVDPYALVGQWLTDALNPSVYTYEVA
PLFTLMEEQVLAEMRRIVGFPNGGQGDGIFCPGGSIANGYAISCARYRHS
PESKKNGLFNAKPLIIFTSEDAHYSVEKLAMFMGFGSDHVRKIATNEVGK
MRLSDLEKQVKLCLENGWQPLMVSATAGTTVLGAFDDLAGISEVCKKYNM
WMHVDAAWGGGALMSKKYRHLLNGIERADSVTWNPHKLLAASQQCSTFLT
RHQQVLAQCHSTNATYLFQKDKFYDTSFDTGDKHIQCGRRADVFKFWFMW
KAKGTQGLEAHVEKVFRMAEFFTAKVRERPGFELVLESPECTNISFWYVP
PGLREMERNREFYDRLHKVAPKVKEGMIKKGSMMITYQPLRQLPNFFRLV
LQNSCLEESDMVYFLDEIESLAQNL*

LP11089.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14260-PA 578 GF14260-PA 1..578 1..575 2750 89.1 Plus
Dana\GF24407-PA 510 GF24407-PA 21..510 82..575 1120 43.2 Plus
Dana\GF10330-PA 510 GF10330-PA 49..508 121..575 1097 45.4 Plus
Dana\GF12784-PA 876 GF12784-PA 25..399 118..484 361 28.7 Plus
Dana\GF13801-PA 600 GF13801-PA 5..398 95..484 341 28.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23885-PA 572 GG23885-PA 1..572 1..575 3008 96.3 Plus
Dere\GG14223-PA 510 GG14223-PA 21..510 82..575 1124 43.4 Plus
Dere\GG16103-PA 510 GG16103-PA 49..508 121..575 1083 44.1 Plus
Dere\GG24151-PA 847 GG24151-PA 25..399 118..484 360 28.4 Plus
Dere\GG10813-PA 587 GG10813-PA 5..398 95..484 333 27.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11117-PA 588 GH11117-PA 1..588 1..575 2543 79.8 Plus
Dgri\GH16827-PA 511 GH16827-PA 47..507 118..573 1157 47 Plus
Dgri\GH17003-PA 510 GH17003-PA 30..510 93..575 1130 43.9 Plus
Dgri\GH21773-PA 816 GH21773-PA 25..399 118..484 374 28.6 Plus
Dgri\GH20148-PA 588 GH20148-PA 34..398 127..484 333 28.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
b-PB 575 CG7811-PB 1..575 1..575 3024 100 Plus
b-PA 575 CG7811-PA 1..575 1..575 3024 100 Plus
b-PC 514 CG7811-PC 1..514 62..575 2723 100 Plus
Gad1-PD 510 CG14994-PD 32..510 95..575 1097 43.7 Plus
Gad1-PC 510 CG14994-PC 32..510 95..575 1097 43.7 Plus
Gad1-PA 510 CG14994-PA 32..510 95..575 1097 43.7 Plus
Gad1-PB 510 CG14994-PB 32..510 95..575 1097 43.7 Plus
CG5618-PA 510 CG5618-PA 49..508 121..575 1044 44.5 Plus
CG5618-PE 346 CG5618-PE 2..344 240..575 789 45.2 Plus
CG5618-PD 346 CG5618-PD 2..344 240..575 789 45.2 Plus
Hdc-PC 619 CG3454-PC 25..399 118..484 336 28.2 Plus
Hdc-PD 847 CG3454-PD 25..399 118..484 336 28.2 Plus
Hdc-PB 847 CG3454-PB 25..399 118..484 336 28.2 Plus
Hdc-PA 847 CG3454-PA 25..399 118..484 336 28.2 Plus
Ddc-PC 510 CG10697-PC 16..506 70..575 331 25.3 Plus
Ddc-PD 475 CG10697-PD 3..471 93..575 329 25.5 Plus
Ddc-PB 475 CG10697-PB 3..471 93..575 329 25.5 Plus
Tdc1-PA 587 CG30445-PA 12..398 106..484 316 27.5 Plus
amd-PA 510 CG10501-PA 3..401 93..485 310 25.6 Plus
amd-PB 510 CG10501-PB 44..401 140..485 296 25.9 Plus
Tdc2-PA 637 CG30446-PA 34..400 127..484 283 26.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18241-PA 580 GI18241-PA 1..580 1..575 2473 78.2 Plus
Dmoj\GI11920-PA 507 GI11920-PA 47..506 118..573 1159 47.4 Plus
Dmoj\GI11417-PA 510 GI11417-PA 30..510 93..575 1117 43.5 Plus
Dmoj\GI19320-PA 817 GI19320-PA 25..399 118..484 362 28.4 Plus
Dmoj\GI20239-PA 583 GI20239-PA 5..398 95..484 338 27.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21233-PA 589 GL21233-PA 1..589 1..575 2676 85.1 Plus
Dper\GL25133-PA 506 GL25133-PA 45..504 121..575 1077 44.1 Plus
Dper\GL16767-PA 340 GL16767-PA 21..327 82..392 695 44.3 Plus
Dper\GL11582-PA 843 GL11582-PA 25..401 118..484 340 27.2 Plus
Dper\GL10989-PA 593 GL10989-PA 34..398 127..484 331 27.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20603-PA 589 GA20603-PA 1..589 1..575 2676 85.3 Plus
Dpse\Gad1-PA 510 GA13411-PA 21..510 82..575 1121 43.6 Plus
Dpse\GA19009-PA 506 GA19009-PA 45..504 121..575 1078 44.1 Plus
Dpse\GA17460-PA 843 GA17460-PA 25..401 118..484 339 27.2 Plus
Dpse\GA15850-PA 593 GA15850-PA 34..398 127..484 331 27.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15264-PA 576 GM15264-PA 1..576 1..575 3085 98.4 Plus
Dsec\GM14017-PA 510 GM14017-PA 21..510 82..575 1124 43.4 Plus
Dsec\GM22279-PA 510 GM22279-PA 49..506 121..573 1094 45.4 Plus
Dsec\GM21194-PA 847 GM21194-PA 25..399 118..484 361 28.4 Plus
Dsec\GM20862-PA 587 GM20862-PA 5..398 95..484 332 27.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23928-PA 576 GD23928-PA 1..576 1..575 3079 98.3 Plus
Dsim\GD13295-PA 580 GD13295-PA 113..580 108..575 1120 44.5 Plus
Dsim\GD14877-PA 510 GD14877-PA 49..508 121..575 1092 45.2 Plus
Dsim\GD10721-PA 847 GD10721-PA 25..399 118..484 361 28.4 Plus
Dsim\GD10313-PA 587 GD10313-PA 5..398 95..484 332 27.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18147-PA 586 GJ18147-PA 1..586 1..575 2564 81.1 Plus
Dvir\GJ13795-PA 508 GJ13795-PA 47..508 118..575 1132 45.8 Plus
Dvir\GJ13613-PA 510 GJ13613-PA 30..510 93..575 1128 43.6 Plus
Dvir\GJ22198-PA 825 GJ22198-PA 25..399 118..484 359 27.8 Plus
Dvir\GJ20191-PA 582 GJ20191-PA 5..398 95..484 336 27.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24391-PA 583 GK24391-PA 1..583 1..575 2521 79.8 Plus
Dwil\GK13724-PA 510 GK13724-PA 30..510 93..575 1111 43.2 Plus
Dwil\GK16953-PA 513 GK16953-PA 51..511 121..575 1106 44.6 Plus
Dwil\GK17782-PA 806 GK17782-PA 25..399 118..484 362 27.6 Plus
Dwil\Ddc-PA 511 GK24237-PA 12..436 66..487 338 26.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18686-PA 570 GE18686-PA 1..570 1..575 3008 96.3 Plus
Dyak\GE20651-PA 510 GE20651-PA 21..510 82..575 1124 43.4 Plus
Dyak\GE19668-PA 510 GE19668-PA 49..508 121..575 1093 44.7 Plus
Dyak\GE23006-PA 510 GE23006-PA 49..508 121..575 1091 44.7 Plus
Dyak\GE19346-PA 849 GE19346-PA 25..399 118..484 359 28.4 Plus

LP11089.hyp Sequence

Translation from 183 to 1910

> LP11089.hyp
MLASENFPTHHFKESIFKPYSTTSGDDLASVSPLTATAALVASTSSPADS
TSTVAFEQASKMLANAANNNNNNNNNITSTKDDLSSFVASHPAAEFEGFI
RACVDEIIKLAVFQGTNRSSKVVEWHEPAELRQLFDFQLREQGESQDKLR
ELLRETIRFSVKTGHPYFINQLYSGVDPYALVGQWLTDALNPSVYTYEVA
PLFTLMEEQVLAEMRRIVGFPNGGQGDGIFCPGGSIANGYAISCARYRHS
PESKKNGLFNAKPLIIFTSEDAHYSVEKLAMFMGFGSDHVRKIATNEVGK
MRLSDLEKQVKLCLENGWQPLMVSATAGTTVLGAFDDLAGISEVCKKYNM
WMHVDAAWGGGALMSKKYRHLLNGIERADSVTWNPHKLLAASQQCSTFLT
RHQQVLAQCHSTNATYLFQKDKFYDTSFDTGDKHIQCGRRADVFKFWFMW
KAKGTQGLEAHVEKVFRMAEFFTAKVRERPGFELVLESPECTNISFWYVP
PGLREMERNREFYDRLHKVAPKVKEGMIKKGSMMITYQPLRQLPNFFRLV
LQNSCLEESDMVYFLDEIESLAQNL*

LP11089.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
b-PB 575 CG7811-PB 1..575 1..575 3024 100 Plus
b-PA 575 CG7811-PA 1..575 1..575 3024 100 Plus
b-PC 514 CG7811-PC 1..514 62..575 2723 100 Plus
Gad1-PD 510 CG14994-PD 32..510 95..575 1097 43.7 Plus
Gad1-PC 510 CG14994-PC 32..510 95..575 1097 43.7 Plus