Clone LP11136 Report

Search the DGRC for LP11136

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:111
Well:36
Vector:pOT2
Associated Gene/TranscriptCep89-RA
Protein status:LP11136.pep: gold
Preliminary Size:1436
Sequenced Size:1501

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8214 2002-01-01 Sim4 clustering to Release 2
CG8214 2002-05-18 Blastp of sequenced clone
CG8214 2003-01-01 Sim4 clustering to Release 3
CG8214 2008-04-29 Release 5.5 accounting
CG8214 2008-08-15 Release 5.9 accounting
CG8214 2008-12-18 5.12 accounting

Clone Sequence Records

LP11136.complete Sequence

1501 bp (1501 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119085

> LP11136.complete
CCACAATGAGCACGCGAAATGTGATGATAACGGACCTGGATCAGCCAGAT
CCGAACCAGCAGCAGCATCATCAAAATCCCAAAAAGAACCGAAAGGTTCT
CCAAACTCTGTCGGGCAATTTTAATCGTCGGTCACGAAGCGTGGAGGTGG
AAGTAAAGCGACAGGATAACTTGGGTGTTGTCCACAAAGATCGCAAAAAG
GATCGTTCGTTTAACTCGCTGTTGCAAGCCAAGGACCAGCAGTTGGAGCA
GCTTGTGCAGCGATTAGCCACCCTGCATCGATACAACGACCAATTCGCCA
AGGAGAATGACCAACTACGCAAGGACAGCGGCCAGCTGGAGCGGCGTCTT
ACGGAGGCGGAGCAGCAGGTTGCCAATTGCAGCCGCTGTCAACAGCTCGG
CCAACGACTGGACACCGTTCTTGCACAGAATAGAACATTAGCCGGCGACG
TGGACATGCTGAAGACGCTCGTCTTCAGGCTGAACGTGCAAATTGAGAGT
TACCAGGATCAACGGCGTCTCGGTGAGGGTGCACCCACTTGTGGAGGATC
AACGAAAGTCAGCTCGTCATCTGCTCCGTATCCGCCACTGCCCACTCACA
CGTTGGGACCACTCCTGCAGGCATACGATGAATCTCTAAGGGATAAGGAC
GCTCTTTTGGCTCAATATAACACAGAGTTCGAGCACTTCACTGGGGAACT
AAAGCGAGCCCTGGAGGAGAACACAAAGCTGCTGCAGTCCCAGGAGCAAC
TGCGTCGTGACCTCGGCGGCTGGCGAGAGGAGCGAGTGTGTCTGCAGGCC
CAACTAGGAGTATGCCGCTCCAAAGCGGAGGCGCAAACTCGCAAGACGGA
CTTGGCCAAGGAGAAGCTGGTGGAAGTGATGCACTGCTACGAACAGCGCA
TGCAGACGCTGATCCTGGACATGGATCACCTGCAGGCGGCCTACGCGCGA
ACTAAATCCGAACTAGCCGCGCTTAAAAGTGCCTCATCGGCGGCGCCCGC
TGCGGTTGCTCCTCCAGTTCCCGCCGAATCCGAGGCACTGCATCAGTGCA
AAGCCCTGCTTGAGCAATTGCGGCAGGAGCATGCGAGAGAGCGAACTTGC
CTCCAGGAACAGCTGCAAGCCACCACCGCACGGGCAGCTTCACTGGTCCG
CAGCACGGAAAAAGCCAAGCACAGCAGAGATCGGCTTAAGGCTCGTCTGA
GAATGGCGCTGCAGTGGGCCCAAAAGCTGGAGGCAGGGCAGGCTGAGGTG
CGCGATACCTACGAGGCGGTACGCCGCCTGGAAGTACTTGTCCAGCACAA
GGAGTCACAATTGCGCGGATTGCATGCCCGGAATGCAGAAGAAATGGACA
AGTTGCGTCATAAGTTACAGCAGAAGGAGGAAACGATATGTGCGCTGCTT
AGAGGCAAAATGGAGCGCAGACCGGCGGTGGATTAACGCGTAGAACATAG
TTTTTAACAATTAAAAATATATAATTTCAATACAAAAAAAAAAAAAAAAA
A

LP11136.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8214-RA 1698 CG8214-RA 213..1698 1..1486 7430 100 Plus
CG8214-RB 1562 CG8214-RB 297..1562 221..1486 6330 100 Plus
CG8214-RB 1562 CG8214-RB 26..246 1..221 1105 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11574570..11575322 1483..731 3675 99.2 Minus
chr2R 21145070 chr2R 11575386..11575896 731..221 2510 99.4 Minus
chr2R 21145070 chr2R 11575947..11576167 221..1 1075 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:55:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15687384..15688140 1487..731 3785 100 Minus
2R 25286936 2R 15688204..15688714 731..221 2555 100 Minus
2R 25286936 2R 15688765..15688985 221..1 1105 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15688583..15689339 1487..731 3785 100 Minus
2R 25260384 2R 15689403..15689913 731..221 2555 100 Minus
2R 25260384 2R 15689964..15690184 221..1 1105 100 Minus
Blast to na_te.dros performed 2019-03-16 02:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6846..6900 34..88 113 67.3 Plus

LP11136.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:57:53 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11575947..11576167 1..221 99   Minus
chr2R 11574570..11575321 732..1483 99 <- Minus
chr2R 11575386..11575895 222..731 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:41:12 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
CG8214-RA 1..1431 6..1436 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:41:44 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
CG8214-RA 1..1431 6..1436 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:41:20 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
CG8214-RA 1..1431 6..1436 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:33:48 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
CG8214-RA 1..1431 6..1436 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:26:02 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
Cep89-RA 1..1431 6..1436 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:15:48 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
CG8214-RA 1..1483 1..1483 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:41:44 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
CG8214-RA 1..1483 1..1483 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:41:20 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
CG8214-RA 1..1483 1..1483 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:33:49 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
CG8214-RA 1..1483 1..1483 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:26:02 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
Cep89-RA 1..1483 1..1483 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:57:53 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15687388..15688139 732..1483 100 <- Minus
2R 15688204..15688713 222..731 100 <- Minus
2R 15688765..15688985 1..221 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:57:53 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15687388..15688139 732..1483 100 <- Minus
2R 15688204..15688713 222..731 100 <- Minus
2R 15688765..15688985 1..221 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:57:53 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15687388..15688139 732..1483 100 <- Minus
2R 15688204..15688713 222..731 100 <- Minus
2R 15688765..15688985 1..221 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:41:20 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11574893..11575644 732..1483 100 <- Minus
arm_2R 11575709..11576218 222..731 100 <- Minus
arm_2R 11576270..11576490 1..221 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:06:10 Download gff for LP11136.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15688587..15689338 732..1483 100 <- Minus
2R 15689403..15689912 222..731 100 <- Minus
2R 15689964..15690184 1..221 100   Minus

LP11136.hyp Sequence

Translation from 2 to 1435

> LP11136.hyp
TMSTRNVMITDLDQPDPNQQQHHQNPKKNRKVLQTLSGNFNRRSRSVEVE
VKRQDNLGVVHKDRKKDRSFNSLLQAKDQQLEQLVQRLATLHRYNDQFAK
ENDQLRKDSGQLERRLTEAEQQVANCSRCQQLGQRLDTVLAQNRTLAGDV
DMLKTLVFRLNVQIESYQDQRRLGEGAPTCGGSTKVSSSSAPYPPLPTHT
LGPLLQAYDESLRDKDALLAQYNTEFEHFTGELKRALEENTKLLQSQEQL
RRDLGGWREERVCLQAQLGVCRSKAEAQTRKTDLAKEKLVEVMHCYEQRM
QTLILDMDHLQAAYARTKSELAALKSASSAAPAAVAPPVPAESEALHQCK
ALLEQLRQEHARERTCLQEQLQATTARAASLVRSTEKAKHSRDRLKARLR
MALQWAQKLEAGQAEVRDTYEAVRRLEVLVQHKESQLRGLHARNAEEMDK
LRHKLQQKEETICALLRGKMERRPAVD*

LP11136.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Cep89-PA 476 CG8214-PA 1..476 2..477 2413 100 Plus

LP11136.pep Sequence

Translation from 5 to 1435

> LP11136.pep
MSTRNVMITDLDQPDPNQQQHHQNPKKNRKVLQTLSGNFNRRSRSVEVEV
KRQDNLGVVHKDRKKDRSFNSLLQAKDQQLEQLVQRLATLHRYNDQFAKE
NDQLRKDSGQLERRLTEAEQQVANCSRCQQLGQRLDTVLAQNRTLAGDVD
MLKTLVFRLNVQIESYQDQRRLGEGAPTCGGSTKVSSSSAPYPPLPTHTL
GPLLQAYDESLRDKDALLAQYNTEFEHFTGELKRALEENTKLLQSQEQLR
RDLGGWREERVCLQAQLGVCRSKAEAQTRKTDLAKEKLVEVMHCYEQRMQ
TLILDMDHLQAAYARTKSELAALKSASSAAPAAVAPPVPAESEALHQCKA
LLEQLRQEHARERTCLQEQLQATTARAASLVRSTEKAKHSRDRLKARLRM
ALQWAQKLEAGQAEVRDTYEAVRRLEVLVQHKESQLRGLHARNAEEMDKL
RHKLQQKEETICALLRGKMERRPAVD*

LP11136.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13375-PA 473 GF13375-PA 1..473 1..476 1965 82.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22338-PA 476 GG22338-PA 1..476 1..476 2141 93.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22965-PA 490 GH22965-PA 11..490 6..476 1502 66.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cep89-PA 476 CG8214-PA 1..476 1..476 2413 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18452-PA 492 GI18452-PA 1..492 1..476 1377 64.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11859-PA 489 GL11859-PA 1..489 1..476 1650 69.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20904-PA 479 GA20904-PA 1..479 1..476 1838 76 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20125-PA 453 GM20125-PA 1..453 1..476 2283 92.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25603-PA 476 GD25603-PA 1..476 1..476 2436 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21537-PA 520 GJ21537-PA 1..520 1..476 1457 62.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17959-PA 489 GK17959-PA 1..489 1..476 1686 72.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14138-PA 478 GE14138-PA 1..478 1..476 2203 93.5 Plus