Clone LP11159 Report

Search the DGRC for LP11159

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:111
Well:59
Vector:pOT2
Associated Gene/TranscriptCG33490-RA
Protein status:LP11159.pep: gold
Preliminary Size:1829
Sequenced Size:1763

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6110 2001-01-01 Release 2 assignment
CG33490 2002-05-20 Blastp of sequenced clone
CG33490 2008-04-29 Release 5.5 accounting
CG33490 2008-08-15 Release 5.9 accounting
CG33490 2008-12-18 5.12 accounting

Clone Sequence Records

LP11159.complete Sequence

1763 bp (1763 high quality bases) assembled on 2002-05-20

GenBank Submission: AY118618

> LP11159.complete
AAAACATTCAAATAACACATAATAGTATCCTATACTCACTGGACTTTATT
AAAACAATACAGATGGCAAACATTGGTCGTTACATAGAAAGAAATCCGGG
AATACGGGCTGCAGGATTGACATCGACCGTGCAATTTAATGGGGCCAAGG
ATTGTCTGTTCGTCGTGAGTTTGGAGGAGGAGGCCGAGGATCGTATAAGG
GCTCTGTGTCGTAGAAGTCGACCCAAACCAGCCAAACGAACTCCCAAGCT
GCCCACCCATCAAATAGGTGACATTCTCAATAATGAAAATCCGGGACTCT
TTGCCGAGCTTCAAAATAAATTTCGCGAGAATATGTTCCATAAAAAGCCC
GGTTTGGGCGAAGCAAGAGAAACTAACTCAAAACCGAGCTATGTAACGAA
TTTGAGTCACACCTTTGGTAAAATCACGCAATCAAATTGCAATGATTCTT
TGTACTCTATCGTCCTGCCACCAAAATCAGCCGAGCAGGTCAATCGAGAG
TATGGCGAATACCATGATAAACATATTATCAGTCATAATCACTACTTTCC
CGCCGAACAGATTAATCGCAGATACTCAAAGCCCTTCAATCGTTTTAATA
CTTTCGGCTTGCCACCGACTCTCGATCCTTCAGGTATCAAGATGAAACAC
TGCTTGGAGGAGGGTGAGGAGCACTTGAAAATAGTCAAAAAACCCCAAAA
GGACATTGACGATCGCACTAAAGGACCTTTGGGCAAAAAGTATTCGTGGT
ATCCCTACCAGATACCCGAAAATATGACCTTTGGTCGCACGCTGCCTCGG
GAAACCGATGTCCGATCTCTGCTAGAATACACCTCACCCTCCATAAAGTC
CGAGAAATTAGCGATTGCCGTGAGTCACCTAAATATGCTGCGCAAAATGC
TCCAGGAGCGGGACGACTTTAATATGAACCAGGTGATCTCGGCTTTGGGA
AAAAAGGATACGGAGGGGCAGCGTCAACTGCCACTGGACGAGGTCATTAA
CGTGTTGCACAAGCTAAGTATTCCGGCAGATGCGGAAAAGATTCGCAACG
CTGCGTCCCACTTTCAGTTGTTTGTGGACGAGGGATGCTGCTCGGAAAAG
GTGAAATACGAGGAACTATGCGATCTCCTTTCGATCCTGAAATCTCTGCC
CTTGATTGGATCCATTACACCCATGCCAAAGGTGACGTACAACCAGGATA
CAGCCTATCGTCAGTTGTGTGCTGATTTGATGAAAAAACCCCCAGAGGGA
CCGCAATTCAAAACTGCGAAAAAGGCGTCCATTAAACAGGACATGAATGC
AGCACCTTTCAAAGACTTTAATAGTCCGCAAAAGGCGCCTATTGAACAGG
ATATGGATGAAACACGGTCCAGGGACTACAAAACTTCGCAAAAGACGCCC
ATTCAACAGGATATGGATGACACACGTGTCGGGGACGTAATTAATCCAGA
GTTTTCTACCTTATGTGGCCTATGGCCAAGTGATTTTAAGGCATTGCGTA
GCAAGGATGAAATCGAACGAATATTCAAGGACATCGTCTCGAAGGAAGAC
TTTCAAACAATCTGGCTGAGTCTAATGGATGAGCAGAAGGATCAAAACGA
AATGGCATCCGTTGCACAATTTCGTGCTCAGATGAAGAAGAACATTGAAT
CATAATTCAAGTTAGGTTTTTATTCTTAGAAGCGATTTGTACAAATAGGT
ATGATTTTTCACAGTCAATAATAAATGCACAATATTTATTTGTATAAAAA
AAAAAAAAAAAAA

LP11159.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG33490-RA 1745 CG33490-RA 1..1745 1..1745 8725 100 Plus
CG33490.a 1682 CG33490.a 417..1682 480..1745 6330 100 Plus
CG33490.a 1682 CG33490.a 1..417 1..417 2085 100 Plus
CG33489.a 1723 CG33489.a 1653..1723 61..131 355 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11563714..11564713 1745..746 4880 99.2 Minus
chr3L 24539361 chr3L 11565010..11565580 571..1 2675 97.9 Minus
chr3L 24539361 chr3L 11564772..11564949 747..570 875 99.4 Minus
chr3L 24539361 chr3L 11564093..11564189 1426..1330 215 81.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:55:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11572795..11573796 1747..746 5010 100 Minus
3L 28110227 3L 11574093..11574663 571..1 2855 100 Minus
3L 28110227 3L 11573855..11574032 747..570 890 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11565895..11566896 1747..746 5010 100 Minus
3L 28103327 3L 11567193..11567763 571..1 2855 100 Minus
3L 28103327 3L 11566955..11567132 747..570 890 100 Minus
Blast to na_te.dros performed 2019-03-16 02:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 1908..1998 1745..1650 126 62.5 Minus

LP11159.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:23:33 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11563733..11564713 746..1726 99 <- Minus
chr3L 11564774..11564947 572..745 99 <- Minus
chr3L 11565010..11565580 1..571 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:41:14 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
CG33490-RA 1..1593 63..1655 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:31 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
CG33490-RA 1..1593 63..1655 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:12:50 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
CG33490-RA 1..1593 63..1655 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:14 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
CG33490-RA 1..1593 63..1655 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:07:54 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
CG33490-RA 1..1593 63..1655 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:11:27 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
CG33490-RA 1..1745 1..1745 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:31 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
CG33490-RA 1..1745 1..1745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:12:50 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
CG33490-RA 1..1745 1..1745 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:14 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
CG33490-RA 1..1745 1..1745 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:07:54 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
CG33490-RA 1..1745 1..1745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:33 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11572797..11573796 746..1745 100 <- Minus
3L 11573857..11574030 572..745 100 <- Minus
3L 11574093..11574663 1..571 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:33 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11572797..11573796 746..1745 100 <- Minus
3L 11573857..11574030 572..745 100 <- Minus
3L 11574093..11574663 1..571 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:33 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11572797..11573796 746..1745 100 <- Minus
3L 11573857..11574030 572..745 100 <- Minus
3L 11574093..11574663 1..571 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:12:50 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11565897..11566896 746..1745 100 <- Minus
arm_3L 11566957..11567130 572..745 100 <- Minus
arm_3L 11567193..11567763 1..571 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:02:48 Download gff for LP11159.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11565897..11566896 746..1745 100 <- Minus
3L 11566957..11567130 572..745 100 <- Minus
3L 11567193..11567763 1..571 100   Minus

LP11159.hyp Sequence

Translation from 2 to 1654

> LP11159.hyp
NIQITHNSILYSLDFIKTIQMANIGRYIERNPGIRAAGLTSTVQFNGAKD
CLFVVSLEEEAEDRIRALCRRSRPKPAKRTPKLPTHQIGDILNNENPGLF
AELQNKFRENMFHKKPGLGEARETNSKPSYVTNLSHTFGKITQSNCNDSL
YSIVLPPKSAEQVNREYGEYHDKHIISHNHYFPAEQINRRYSKPFNRFNT
FGLPPTLDPSGIKMKHCLEEGEEHLKIVKKPQKDIDDRTKGPLGKKYSWY
PYQIPENMTFGRTLPRETDVRSLLEYTSPSIKSEKLAIAVSHLNMLRKML
QERDDFNMNQVISALGKKDTEGQRQLPLDEVINVLHKLSIPADAEKIRNA
ASHFQLFVDEGCCSEKVKYEELCDLLSILKSLPLIGSITPMPKVTYNQDT
AYRQLCADLMKKPPEGPQFKTAKKASIKQDMNAAPFKDFNSPQKAPIEQD
MDETRSRDYKTSQKTPIQQDMDDTRVGDVINPEFSTLCGLWPSDFKALRS
KDEIERIFKDIVSKEDFQTIWLSLMDEQKDQNEMASVAQFRAQMKKNIES
*

LP11159.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG33490-PA 530 CG33490-PA 1..530 21..550 2787 100 Plus
CG33489-PB 497 CG33489-PB 1..489 21..544 960 40.6 Plus
CG33489-PA 497 CG33489-PA 1..489 21..544 960 40.6 Plus
CG32086-PA 491 CG32086-PA 1..488 21..550 908 40.1 Plus
CG32086-PB 475 CG32086-PB 1..472 21..550 861 39.4 Plus

LP11159.pep Sequence

Translation from 62 to 1654

> LP11159.pep
MANIGRYIERNPGIRAAGLTSTVQFNGAKDCLFVVSLEEEAEDRIRALCR
RSRPKPAKRTPKLPTHQIGDILNNENPGLFAELQNKFRENMFHKKPGLGE
ARETNSKPSYVTNLSHTFGKITQSNCNDSLYSIVLPPKSAEQVNREYGEY
HDKHIISHNHYFPAEQINRRYSKPFNRFNTFGLPPTLDPSGIKMKHCLEE
GEEHLKIVKKPQKDIDDRTKGPLGKKYSWYPYQIPENMTFGRTLPRETDV
RSLLEYTSPSIKSEKLAIAVSHLNMLRKMLQERDDFNMNQVISALGKKDT
EGQRQLPLDEVINVLHKLSIPADAEKIRNAASHFQLFVDEGCCSEKVKYE
ELCDLLSILKSLPLIGSITPMPKVTYNQDTAYRQLCADLMKKPPEGPQFK
TAKKASIKQDMNAAPFKDFNSPQKAPIEQDMDETRSRDYKTSQKTPIQQD
MDDTRVGDVINPEFSTLCGLWPSDFKALRSKDEIERIFKDIVSKEDFQTI
WLSLMDEQKDQNEMASVAQFRAQMKKNIES*

LP11159.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24540-PA 537 GF24540-PA 1..533 1..526 1108 43 Plus
Dana\GF24538-PA 508 GF24538-PA 1..482 1..524 1010 40.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13912-PA 489 GG13912-PA 1..489 1..529 2266 79.6 Plus
Dere\GG13911-PA 499 GG13911-PA 1..497 1..530 1003 41.8 Plus
Dere\GG13910-PA 492 GG13910-PA 1..489 1..530 895 40.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16635-PA 493 GH16635-PA 1..491 1..530 992 40.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG33490-PA 530 CG33490-PA 1..530 1..530 2787 100 Plus
CG33489-PB 497 CG33489-PB 1..489 1..524 960 40.6 Plus
CG33489-PA 497 CG33489-PA 1..489 1..524 960 40.6 Plus
CG32086-PA 491 CG32086-PA 1..488 1..530 908 40.1 Plus
CG32086-PB 475 CG32086-PB 1..472 1..530 861 39.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11592-PA 499 GI11592-PA 1..491 1..529 1009 41.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22816-PA 502 GL22816-PA 1..491 1..524 1134 45.2 Plus
Dper\GL22850-PA 473 GL22850-PA 1..459 1..526 923 40.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23871-PA 502 GA23871-PA 1..491 1..524 1125 45 Plus
Dpse\GA23893-PA 498 GA23893-PA 1..484 1..526 971 41.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24741-PA 255 GM24741-PA 1..255 275..529 1226 91 Plus
Dsec\GM24740-PA 206 GM24740-PA 1..206 1..206 1073 94.2 Plus
Dsec\GM24739-PA 497 GM24739-PA 1..495 1..530 973 40.2 Plus
Dsec\GM24736-PA 491 GM24736-PA 1..488 1..530 930 40.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12800-PA 529 GD12800-PA 1..529 1..529 2696 94 Plus
Dsim\GD12799-PA 497 GD12799-PA 1..495 1..530 970 40.2 Plus
Dsim\GD12796-PA 491 GD12796-PA 1..488 1..530 928 40.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11272-PA 497 GJ11272-PA 2..486 3..524 1015 41.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17019-PA 495 GK17019-PA 1..488 1..526 923 39.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20206-PA 468 GE20206-PA 1..465 1..526 2116 76 Plus
Dyak\GE20205-PA 497 GE20205-PA 1..497 1..530 972 41.1 Plus
Dyak\GE20201-PA 490 GE20201-PA 1..486 1..529 941 41.4 Plus