Clone LP11180 Report

Search the DGRC for LP11180

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:111
Well:80
Vector:pOT2
Associated Gene/TranscriptDic61B-RA
Protein status:LP11180.pep: gold
Sequenced Size:2470

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7051 2002-10-31 Blastp of sequenced clone
CG7051 2008-04-29 Release 5.5 accounting
CG7051 2008-08-15 Release 5.9 accounting
CG7051 2008-12-18 5.12 accounting

Clone Sequence Records

LP11180.complete Sequence

2470 bp (2470 high quality bases) assembled on 2002-10-31

GenBank Submission: BT001517

> LP11180.complete
GTGCCCTCAAAATAATAAAATAACAAAATACTCATTAAAAATTTGGACGA
AATCAAGAGGAGTACATAACAAAATACAAGTCATGTCCGCGTCAGTAAGA
AATACAGTCACTAGCCAAGAAAATGGGAGTATCTTTAAACGGTCCAGTAA
CTTAGACAACGAACTCAAAAAGAAGTCCGTGGTGGTTAATCAGACACAAG
CCGAAGAGTCTAAGGCTAAGAAGAAAGATACTACGCACTATTACAGTGTG
GAAACACTTGCCGACCTGCAGTATCGATCTCAGATAAAGGTTTTGGAAAA
GATCTATGGCGAGGAGGTTGATATGACACCTAAGTCGATCCAAGATGACA
CCTATGTGGAGCAGTTCATGAAGTACAACCTAAATGTCATGCACCAAATG
ACTAACTTCACTACAATGGTAGCGAAGAGCACGACCAGATCCCGCACGCG
GTCTAGTGTTCGGGCCGGAATAGGCGGCAATAAGCAGTCCATTGACGACC
TGATGAACGGGATACTTTATGAAACTATTAACTGGGAACCGTACAGCACT
GTTGAGGCTCTCGAAGAGGCGTACGAGCCAAAGCCGTATACCAAGTCCTT
TTTAAAGATCACCTTACGCAAGTCTGACTTCTTCGAAATTCACAGCCAGA
CGCAGACGACGGTGGCCAAGGGATCGCCCGAGGGCGACGATGCGGAGCGA
GACAACCGAAACTACGAGTATCTGACAATAGGGAAAGGCAAAATTCGCCG
GCGCTCAGACAATGACGCTCAGACAGATACTCTGCTCTTCACCACTCGGG
CAGTCAACACCATCCTCATAACCAAGGCCACCGTCAGCTCTTACGTTTCC
AACTTTGAGATGTACGACACGCTGAACAATATCACCAAGGAGTTCGCAAC
AGCCACTATGAGTTCGGTAAAGGACCTGACCTCGGCTCTAGCGCAGACGG
AGGATGCGGATACCTTTGAGGACGACGAGGCCGTTGCCGAAAAAGACAAG
GTCAGCAGCCAGATAGAGCGCCTGTTCCGGAGCCCCGAGTTTCGCAACGC
CATCATGTACATGGGCCGCACGCTCTCGAGCAACACAAACGAGGCGGGGT
TACGACGCTTCCGTAACTTTGACCAGGTGGAACGCTGGAACGCGGAGGCC
GAGTACGTCTACTCGATGAACTTGCTCTTTCGGCTGGTACCGGAGCCCAG
CAAAGACGAGCGCAAGGCCGTAAGCGACATTGATTTCTGCCGCAGCAATG
GTGACATCCTGGCTGTAGCCTACGGACTGTACTCATTTTCCTCACAGCAC
GTACCGACCTCCGGCAGCGTTTTCCTGTGGAGCATTAAAAATCCAGGCGA
GCCGGAGCGCGCATACTACTACGATGTGCCAGTAACGGCAATAAACTTCT
CGCCATTCTTGCCATCCTTGCTCGCCATTGGTCTGTACGACGGCAGCGTG
GAAGTGCGAGATGTGAGCAGTTTGCAGGACACACCCGTTGCGGTCTCGCA
GCGCAGCACTTCGCCAGGCTCCTCGCCGGTGGTTGCCATCCGCTGGATCA
AACAAGTTTCAGACGACGATCATGAAACAGACATCGATCCATTCCTGAGC
CTCTCCCAGGATGGCTCGGTCACCCGCTTCCGGATTATCAAAAGTCCCTT
CCTGCTTGGTTTTACCCAAATGATTCTGGAGCGAGTCGAGGGGCATCCTG
AGGGCATTTTCGTTCACCCATCGTCGCGTATCCCCTGCGAGTCTAACCGC
CACCCGCAAGGCTTAAGCATCACTACACATCCTCTGCACAAGGACATTTA
CTACGTGCTGACAGATGAGGGCTGCATCCACAAGTGCTCAATCAATTATC
AGCATCAGTACTTGGAAGTCCTGCGTTGTCACGACGGGGGTGTCACCGTA
ATGGAGTTCTCGCCTTGGTCTCCCAAACTCTTCCTCACCTGCGGCAACGA
TTGGTTCGTACGCATTTGGGTCGATGGCATCACGCGACCTCTTCTCGAAC
TGCTAGACGAGATGACCCCAGTGCATTGGGCCAAGTGGAGCCCCACCCAC
TCTACGATTATTGTGACGGTGAACCGGGAAACCGCTAACGTCTGGGACTT
TCGCCGAAATTTGCTAAGACCCATGTCCAAGCACAAGATGGACTCTTCTT
TTAATACTGTGGCCAGGTTTTCCCACTGTGGTCGCACATTGGTTATTGGC
AACGAGCGCGGGAACACGCTCTTCAACGCCCTGAACGACATGCCCTTTTC
GCCACACTTCCAATACGACGAGTTAGAGAAAGCCATTTTCAAGGCAATTG
GCAACGACCACGAGCTTCTTATGGAGCTTAAAAGCATTGGTTTCTTTGGG
TACCCAAACAAAAAAGCAGTTTTTTAGATAGGAAAAATGGTATTCTCAAT
AAAACAAAATAATTCGTCGGCCTGAAAGCGAATCTGGATGGCACTGATGA
AAAAAAAAAAAAAAAAAAAA

LP11180.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7051-RA 2754 CG7051-RA 111..2562 1..2452 12260 100 Plus
CG7051-RB 2642 CG7051-RB 276..2588 140..2452 11565 100 Plus
CG7051-RB 2642 CG7051-RB 111..249 1..139 695 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 150309..151753 1955..511 7225 100 Minus
chr3L 24539361 chr3L 149698..149982 2449..2165 1425 100 Minus
chr3L 24539361 chr3L 151810..152033 511..288 1120 100 Minus
chr3L 24539361 chr3L 150044..150259 2168..1953 1080 100 Minus
chr3L 24539361 chr3L 152083..152234 291..140 760 100 Minus
chr3L 24539361 chr3L 152303..152441 139..1 695 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:55:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 150347..151791 1955..511 7225 100 Minus
3L 28110227 3L 149733..150020 2452..2165 1440 100 Minus
3L 28110227 3L 151848..152071 511..288 1120 100 Minus
3L 28110227 3L 150082..150297 2168..1953 1080 100 Minus
3L 28110227 3L 152121..152272 291..140 760 100 Minus
3L 28110227 3L 152341..152479 139..1 695 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 150347..151791 1955..511 7225 100 Minus
3L 28103327 3L 149733..150020 2452..2165 1440 100 Minus
3L 28103327 3L 151848..152071 511..288 1120 100 Minus
3L 28103327 3L 150082..150297 2168..1953 1080 100 Minus
3L 28103327 3L 152121..152272 291..140 760 100 Minus
3L 28103327 3L 152341..152479 139..1 695 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:38:14 has no hits.

LP11180.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:39:12 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 149698..149980 2167..2449 100 <- Minus
chr3L 150046..150258 1954..2166 100 <- Minus
chr3L 150311..151752 512..1953 100 <- Minus
chr3L 151810..152031 290..511 100 <- Minus
chr3L 152085..152234 140..289 100 <- Minus
chr3L 152303..152441 1..139 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:41:16 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7051-RA 1..2295 83..2377 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:38:50 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7051-RA 1..2295 83..2377 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:37:28 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
Dic61B-RA 1..2295 83..2377 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:15:46 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7051-RA 1..2295 83..2377 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:46:53 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
Dic61B-RA 1..2295 83..2377 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:43:23 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7051-RA 111..2559 1..2449 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:38:50 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7051-RA 111..2559 1..2449 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:28 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
Dic61B-RA 111..2559 1..2449 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:15:46 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7051-RA 111..2559 1..2449 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:46:53 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
Dic61B-RA 111..2559 1..2449 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:39:12 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
3L 152341..152479 1..139 100   Minus
3L 149736..150018 2167..2449 100 <- Minus
3L 150084..150296 1954..2166 100 <- Minus
3L 150349..151790 512..1953 100 <- Minus
3L 151848..152069 290..511 100 <- Minus
3L 152123..152272 140..289 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:39:12 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
3L 152341..152479 1..139 100   Minus
3L 149736..150018 2167..2449 100 <- Minus
3L 150084..150296 1954..2166 100 <- Minus
3L 150349..151790 512..1953 100 <- Minus
3L 151848..152069 290..511 100 <- Minus
3L 152123..152272 140..289 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:39:12 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
3L 152341..152479 1..139 100   Minus
3L 149736..150018 2167..2449 100 <- Minus
3L 150084..150296 1954..2166 100 <- Minus
3L 150349..151790 512..1953 100 <- Minus
3L 151848..152069 290..511 100 <- Minus
3L 152123..152272 140..289 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:28 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 149736..150018 2167..2449 100 <- Minus
arm_3L 150084..150296 1954..2166 100 <- Minus
arm_3L 150349..151790 512..1953 100 <- Minus
arm_3L 151848..152069 290..511 100 <- Minus
arm_3L 152123..152272 140..289 100 <- Minus
arm_3L 152341..152479 1..139 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:51:37 Download gff for LP11180.complete
Subject Subject Range Query Range Percent Splice Strand
3L 152123..152272 140..289 100 <- Minus
3L 152341..152479 1..139 100   Minus
3L 149736..150018 2167..2449 100 <- Minus
3L 150084..150296 1954..2166 100 <- Minus
3L 150349..151790 512..1953 100 <- Minus
3L 151848..152069 290..511 100 <- Minus

LP11180.hyp Sequence

Translation from 0 to 2376

> LP11180.hyp
CPQNNKITKYSLKIWTKSRGVHNKIQVMSASVRNTVTSQENGSIFKRSSN
LDNELKKKSVVVNQTQAEESKAKKKDTTHYYSVETLADLQYRSQIKVLEK
IYGEEVDMTPKSIQDDTYVEQFMKYNLNVMHQMTNFTTMVAKSTTRSRTR
SSVRAGIGGNKQSIDDLMNGILYETINWEPYSTVEALEEAYEPKPYTKSF
LKITLRKSDFFEIHSQTQTTVAKGSPEGDDAERDNRNYEYLTIGKGKIRR
RSDNDAQTDTLLFTTRAVNTILITKATVSSYVSNFEMYDTLNNITKEFAT
ATMSSVKDLTSALAQTEDADTFEDDEAVAEKDKVSSQIERLFRSPEFRNA
IMYMGRTLSSNTNEAGLRRFRNFDQVERWNAEAEYVYSMNLLFRLVPEPS
KDERKAVSDIDFCRSNGDILAVAYGLYSFSSQHVPTSGSVFLWSIKNPGE
PERAYYYDVPVTAINFSPFLPSLLAIGLYDGSVEVRDVSSLQDTPVAVSQ
RSTSPGSSPVVAIRWIKQVSDDDHETDIDPFLSLSQDGSVTRFRIIKSPF
LLGFTQMILERVEGHPEGIFVHPSSRIPCESNRHPQGLSITTHPLHKDIY
YVLTDEGCIHKCSINYQHQYLEVLRCHDGGVTVMEFSPWSPKLFLTCGND
WFVRIWVDGITRPLLELLDEMTPVHWAKWSPTHSTIIVTVNRETANVWDF
RRNLLRPMSKHKMDSSFNTVARFSHCGRTLVIGNERGNTLFNALNDMPFS
PHFQYDELEKAIFKAIGNDHELLMELKSIGFFGYPNKKAVF*

LP11180.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dic61B-PA 764 CG7051-PA 1..764 28..791 3986 100 Plus
Dic61B-PB 684 CG7051-PB 1..684 108..791 3593 100 Plus
CG13930-PA 685 CG13930-PA 42..677 144..785 1301 43.2 Plus
CG9313-PC 739 CG9313-PC 355..681 401..739 310 28.7 Plus
CG9313-PA 739 CG9313-PA 355..681 401..739 310 28.7 Plus

LP11180.pep Sequence

Translation from 82 to 2376

> LP11180.pep
MSASVRNTVTSQENGSIFKRSSNLDNELKKKSVVVNQTQAEESKAKKKDT
THYYSVETLADLQYRSQIKVLEKIYGEEVDMTPKSIQDDTYVEQFMKYNL
NVMHQMTNFTTMVAKSTTRSRTRSSVRAGIGGNKQSIDDLMNGILYETIN
WEPYSTVEALEEAYEPKPYTKSFLKITLRKSDFFEIHSQTQTTVAKGSPE
GDDAERDNRNYEYLTIGKGKIRRRSDNDAQTDTLLFTTRAVNTILITKAT
VSSYVSNFEMYDTLNNITKEFATATMSSVKDLTSALAQTEDADTFEDDEA
VAEKDKVSSQIERLFRSPEFRNAIMYMGRTLSSNTNEAGLRRFRNFDQVE
RWNAEAEYVYSMNLLFRLVPEPSKDERKAVSDIDFCRSNGDILAVAYGLY
SFSSQHVPTSGSVFLWSIKNPGEPERAYYYDVPVTAINFSPFLPSLLAIG
LYDGSVEVRDVSSLQDTPVAVSQRSTSPGSSPVVAIRWIKQVSDDDHETD
IDPFLSLSQDGSVTRFRIIKSPFLLGFTQMILERVEGHPEGIFVHPSSRI
PCESNRHPQGLSITTHPLHKDIYYVLTDEGCIHKCSINYQHQYLEVLRCH
DGGVTVMEFSPWSPKLFLTCGNDWFVRIWVDGITRPLLELLDEMTPVHWA
KWSPTHSTIIVTVNRETANVWDFRRNLLRPMSKHKMDSSFNTVARFSHCG
RTLVIGNERGNTLFNALNDMPFSPHFQYDELEKAIFKAIGNDHELLMELK
SIGFFGYPNKKAVF*

LP11180.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24898-PA 771 GF24898-PA 16..771 15..764 3199 78.7 Plus
Dana\GF24973-PA 682 GF24973-PA 42..679 117..763 1379 43.3 Plus
Dana\GF12212-PA 737 GF12212-PA 354..680 374..712 308 28.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14687-PA 763 GG14687-PA 1..763 1..764 3925 95.7 Plus
Dere\GG14573-PA 687 GG14573-PA 42..682 117..761 1360 43.5 Plus
Dere\GG22073-PA 739 GG22073-PA 355..681 374..712 318 28.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15995-PA 760 GH15995-PA 6..756 16..761 2497 60.6 Plus
Dgri\GH15513-PA 686 GH15513-PA 48..678 121..759 1312 42 Plus
Dgri\GH23218-PA 442 GH23218-PA 6..419 16..422 1037 50.1 Plus
Dgri\GH12958-PA 756 GH12958-PA 373..699 374..712 320 27.9 Plus
Dgri\GH20520-PA 756 GH20520-PA 373..699 374..712 320 27.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dic61B-PA 764 CG7051-PA 1..764 1..764 3986 100 Plus
Dic61B-PB 684 CG7051-PB 1..684 81..764 3593 100 Plus
CG13930-PA 685 CG13930-PA 42..677 117..758 1301 43.2 Plus
CG9313-PC 739 CG9313-PC 355..681 374..712 310 28.7 Plus
CG9313-PA 739 CG9313-PA 355..681 374..712 310 28.7 Plus
CG9313-PB 740 CG9313-PB 356..682 374..712 310 28.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16648-PA 752 GI16648-PA 5..750 18..763 2585 61.9 Plus
Dmoj\GI16791-PA 680 GI16791-PA 42..672 117..759 1293 41.5 Plus
Dmoj\GI21066-PA 747 GI21066-PA 364..690 374..712 316 26.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16089-PA 758 GL16089-PA 29..757 24..763 2621 68 Plus
Dper\GL12410-PA 691 GL12410-PA 107..680 173..758 1331 44 Plus
Dper\GL10137-PA 562 GL10137-PA 358..558 374..589 186 26.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20060-PA 770 GA20060-PA 29..769 24..763 2791 71 Plus
Dpse\GA12635-PA 691 GA12635-PA 42..680 117..758 1332 42 Plus
Dpse\GA25088-PA 791 GA25088-PA 408..734 374..712 319 27.6 Plus
Dpse\GA25088-PB 742 GA25088-PB 359..685 374..712 318 27.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14302-PA 773 GM14302-PA 1..773 1..764 4087 97.5 Plus
Dsec\GM14183-PA 685 GM14183-PA 42..678 117..759 1341 42.9 Plus
Dsec\GM15791-PA 698 GM15791-PA 314..640 374..712 321 28.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13539-PA 773 GD13539-PA 1..773 1..764 4086 97.5 Plus
Dsim\GD13451-PA 685 GD13451-PA 42..678 117..759 1341 43.2 Plus
Dsim\GD11552-PA 739 GD11552-PA 355..681 374..712 325 28.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12900-PA 760 GJ12900-PA 9..758 19..763 2672 64.2 Plus
Dvir\GJ12533-PA 696 GJ12533-PA 89..687 147..758 1238 42 Plus
Dvir\GJ21989-PA 749 GJ21989-PA 366..692 374..712 319 27.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12695-PA 754 GK12695-PA 12..749 27..761 2674 66.1 Plus
Dwil\GK17066-PA 689 GK17066-PA 113..679 168..757 1307 43.8 Plus
Dwil\GK17990-PA 741 GK17990-PA 358..684 374..712 326 28.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21048-PA 763 GE21048-PA 1..763 1..764 3964 94.8 Plus
Dyak\GE20931-PA 685 GE20931-PA 42..680 117..761 1357 43.4 Plus
Dyak\GE12154-PA 739 GE12154-PA 361..681 380..712 316 28.6 Plus