Clone LP11230 Report

Search the DGRC for LP11230

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:112
Well:30
Vector:pOT2
Associated Gene/TranscriptCG7573-RB
Protein status:LP11230.pep: gold
Preliminary Size:1515
Sequenced Size:1525

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7573 2002-01-01 Sim4 clustering to Release 2
CG7573 2002-05-18 Blastp of sequenced clone
CG7573 2003-01-01 Sim4 clustering to Release 3
CG7573 2008-04-29 Release 5.5 accounting
CG7573 2008-08-15 Release 5.9 accounting
CG7573 2008-12-18 5.12 accounting

Clone Sequence Records

LP11230.complete Sequence

1525 bp (1525 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119086

> LP11230.complete
TTAAAAACCACATACATAGTTTGATTTAAAAAATATGAACTCATTCGCAC
TTTATCAAGATCCTTTGCGTGGTGAGGTCCTAAAAATATCGGGAAATCAG
ATCGGCATGAGTGTGGTTCCCCGGAAACTTAGTTTCTCGGATCCGATTCT
TTTGCGGCACATCCTCTGTCTGGTGATAGTGGTGCACAACAGTTTTCATC
TCATCCTCTGTTGCAGGCAGTTGAAATTGTGCAAAAGGACTTCCGTTCCG
CCGAAGCAAATGGAGGGCATTTTGTCGCAAGAAGCCTTTCAGGCCTCCAA
GGATAAACAGCTTCATGCCTCATCCCTTGAGATATTCAATATAGCAATAG
ATACATTATATAGCTGCCTTGATCTGTATCTTTGCACTCTGGCTTTCCTC
TGGAAATTGACGGTAGGTTGGTATCACTATGCGGACAGCACTTGGCTGAA
TGTGACATTTATGACTGTATTTTCAACGTACTTGGTTGTCCGGAAGTTGC
CATCACTGTTTTACGAGAAATTGGTCCTGGATCCGCGATACAATGTGGAT
CCTGAAAAGACGCCGCCCTTGTTGGGTTTGATTTGTGCGCTGGTTTTTGT
CGTCGTTTTCCTACAGGTTGCCGTCATTCCGCTGACTGCGATTTTCATGG
CTATTCATATGTTAAGCGAGTGGTATTTCACACTATTCGTTTGGCTGGGT
CTGGTGGGTTTGTCCGTACTGGTATTGGCATTTGTTGGACTGTTTGGAGT
GCCCTGTTTGGGCAAGAGTCGCAAAATGAATAGTACCGATATGGATAATA
GCCTGAAAGCGGTATTGGACGACTTTAATTTTCCCGGCCGGGTCTATATG
GTTCACACCTTCCATGTGGGTCGTCCGACGGCCTGGGTAATGGGATGCTG
CTGTTGCCTGCGTTTAGATATCCACGATAATCTGAAGTGGAACCGTGGAT
TTAGCTCCGATGATTTCGACTGGGGTCAGATGGGTGCTGGTCTGAATGAT
GAGCAGTTGGCTGCCTTTGTGGCCCATCAACTGGCCCATTGGCAACTGTG
GCATGTGGCAAAGGGACTGGCATTGATTTACTTTTATCTCTTGATATATC
TACTACTCTTCGGAATCTGTAACAGGTGGATAACGTTGTATGCGGCCGCG
GGCTTTACGACATTCTATCCCAGTTCGGTGGGCTTTTGGCTGGTGTACAA
GTATCTAATGCCCATCTATCATGACATTTCCACTTGGATAGTGTTCTTTT
GTATACGTCACTTTGAGTACGCCGCCGATGCCTATGTCAATCGCCGAGGT
TACGGACTACCGATGAGGGCCGCTTTGCTCAAACTTTTTTCGGATGATTA
CGAATTTCCCTATGTAGACCAGTGCTACCTCATGTGGCATCGTCTACGGC
CATCGGTCCTGCAACGCATCGATAATCTGCAGCGTTTGAATATGATCAAT
GGTGTCTCCACAGCATGATAACTGAATGCATTTCGATTAAATCACAATTA
TATCCTTAAAAAAAAAAAAAAAAAA

LP11230.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-RB 1708 CG7573-RB 77..1584 1..1508 7540 100 Plus
CG7573.a 1560 CG7573.a 329..1547 290..1508 6095 100 Plus
CG7573.a 1560 CG7573.a 24..315 1..292 1460 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11303386..11304279 614..1507 4455 99.9 Plus
chr3L 24539361 chr3L 11303007..11303334 290..617 1625 99.7 Plus
chr3L 24539361 chr3L 11302645..11302937 1..293 1465 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:55:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11312504..11313398 614..1508 4475 100 Plus
3L 28110227 3L 11312125..11312452 290..617 1640 100 Plus
3L 28110227 3L 11311763..11312055 1..293 1465 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11305604..11306498 614..1508 4475 100 Plus
3L 28103327 3L 11305225..11305552 290..617 1640 100 Plus
3L 28103327 3L 11304863..11305155 1..293 1465 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:38:31 has no hits.

LP11230.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:39:07 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11302645..11302936 1..292 100 -> Plus
chr3L 11303010..11303333 293..616 99 -> Plus
chr3L 11303389..11304279 617..1507 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:41:18 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 1..1434 35..1468 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:41:45 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 1..1434 35..1468 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:19:18 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 1..1434 35..1468 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:33:50 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 1..1434 35..1468 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:22:18 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 1..1434 35..1468 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:15:50 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 17..1523 1..1507 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:41:45 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 17..1523 1..1507 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:18 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 17..1523 1..1507 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:33:50 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 1..1507 1..1507 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:22:18 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 17..1523 1..1507 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:39:07 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11311763..11312054 1..292 100 -> Plus
3L 11312128..11312451 293..616 100 -> Plus
3L 11312507..11313397 617..1507 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:39:07 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11311763..11312054 1..292 100 -> Plus
3L 11312128..11312451 293..616 100 -> Plus
3L 11312507..11313397 617..1507 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:39:07 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11311763..11312054 1..292 100 -> Plus
3L 11312128..11312451 293..616 100 -> Plus
3L 11312507..11313397 617..1507 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:18 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11304863..11305154 1..292 100 -> Plus
arm_3L 11305228..11305551 293..616 100 -> Plus
arm_3L 11305607..11306497 617..1507 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:06:11 Download gff for LP11230.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11304863..11305154 1..292 100 -> Plus
3L 11305228..11305551 293..616 100 -> Plus
3L 11305607..11306497 617..1507 100   Plus

LP11230.pep Sequence

Translation from 34 to 1467

> LP11230.pep
MNSFALYQDPLRGEVLKISGNQIGMSVVPRKLSFSDPILLRHILCLVIVV
HNSFHLILCCRQLKLCKRTSVPPKQMEGILSQEAFQASKDKQLHASSLEI
FNIAIDTLYSCLDLYLCTLAFLWKLTVGWYHYADSTWLNVTFMTVFSTYL
VVRKLPSLFYEKLVLDPRYNVDPEKTPPLLGLICALVFVVVFLQVAVIPL
TAIFMAIHMLSEWYFTLFVWLGLVGLSVLVLAFVGLFGVPCLGKSRKMNS
TDMDNSLKAVLDDFNFPGRVYMVHTFHVGRPTAWVMGCCCCLRLDIHDNL
KWNRGFSSDDFDWGQMGAGLNDEQLAAFVAHQLAHWQLWHVAKGLALIYF
YLLIYLLLFGICNRWITLYAAAGFTTFYPSSVGFWLVYKYLMPIYHDIST
WIVFFCIRHFEYAADAYVNRRGYGLPMRAALLKLFSDDYEFPYVDQCYLM
WHRLRPSVLQRIDNLQRLNMINGVSTA*

LP11230.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25256-PA 480 GF25256-PA 4..471 6..472 1406 54.9 Plus
Dana\GF13436-PA 455 GF13436-PA 31..448 55..469 508 29.2 Plus
Dana\GF13435-PA 450 GF13435-PA 7..445 35..468 416 27.9 Plus
Dana\GF13434-PA 451 GF13434-PA 3..445 33..469 385 25.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15495-PA 477 GG15495-PA 1..477 1..477 2167 87 Plus
Dere\GG22230-PA 455 GG22230-PA 30..447 55..469 506 29.3 Plus
Dere\GG22229-PA 447 GG22229-PA 7..444 35..467 380 25.1 Plus
Dere\GG22228-PA 451 GG22228-PA 6..444 35..468 374 24.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14290-PA 478 GH14290-PA 2..471 3..469 1007 40.2 Plus
Dgri\GH22830-PA 454 GH22830-PA 11..448 36..470 563 31.3 Plus
Dgri\GH22829-PA 451 GH22829-PA 29..451 58..473 421 29.4 Plus
Dgri\GH22828-PA 455 GH22828-PA 9..445 39..469 414 27 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-PB 477 CG7573-PB 1..477 1..477 2564 100 Plus
ste24c-PC 456 CG9002-PC 11..448 36..470 595 30.2 Plus
ste24c-PD 456 CG9002-PD 11..448 36..470 595 30.2 Plus
ste24c-PA 456 CG9002-PA 11..448 36..470 595 30.2 Plus
ste24b-PA 447 CG9001-PA 6..443 34..466 444 26.8 Plus
ste24a-PA 451 CG9000-PA 6..444 35..468 389 24.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23185-PA 485 GI23185-PA 2..471 3..468 953 41.5 Plus
Dmoj\GI21209-PA 454 GI21209-PA 11..447 36..469 558 29.9 Plus
Dmoj\GI21208-PA 450 GI21208-PA 7..446 35..469 496 30 Plus
Dmoj\GI21207-PA 452 GI21207-PA 9..445 39..469 409 25.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10493-PA 470 GL10493-PA 11..454 36..476 525 27.6 Plus
Dper\GL10491-PA 451 GL10491-PA 9..445 39..469 373 24.5 Plus
Dper\GL10492-PA 442 GL10492-PA 8..391 36..414 300 25.3 Plus
Dper\GL22777-PA 260 GL22777-PA 3..139 5..140 290 36.5 Plus
Dper\GL22777-PA 260 GL22777-PA 159..255 379..475 288 58.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20448-PA 481 GA20448-PA 3..476 5..475 1195 48.5 Plus
Dpse\GA17316-PA 470 GA17316-PA 11..454 36..476 526 27.6 Plus
Dpse\GA21467-PA 451 GA21467-PA 8..446 36..469 432 27.3 Plus
Dpse\GA21466-PA 451 GA21466-PA 9..445 39..469 375 24.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25266-PA 477 GM25266-PA 1..477 1..477 2471 97.1 Plus
Dsec\GM20016-PA 447 GM20016-PA 7..446 35..469 417 27.4 Plus
Dsec\GM20015-PA 451 GM20015-PA 6..439 35..463 369 23.9 Plus
Dsec\GM20017-PA 494 GM20017-PA 11..303 36..326 256 26.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14300-PA 477 GD14300-PA 1..477 1..477 2474 97.1 Plus
Dsim\GD25504-PA 451 GD25504-PA 6..439 35..463 371 23.9 Plus
Dsim\GD15221-PA 226 GD15221-PA 2..218 256..470 358 35 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14500-PA 474 GJ14500-PA 2..469 3..466 956 40.6 Plus
Dvir\GJ20810-PA 454 GJ20810-PA 11..447 36..469 571 30.3 Plus
Dvir\GJ20808-PA 452 GJ20808-PA 9..445 39..469 382 26.5 Plus
Dvir\GJ20809-PA 453 GJ20809-PA 8..423 36..446 363 28.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24789-PA 482 GK24789-PA 2..472 3..470 1260 50.5 Plus
Dwil\GK19571-PA 449 GK19571-PA 11..447 36..470 535 28.6 Plus
Dwil\GK19570-PA 452 GK19570-PA 7..446 35..469 458 27.7 Plus
Dwil\GK19569-PA 451 GK19569-PA 3..445 33..469 388 25.7 Plus
Dwil\GK18949-PA 374 GK18949-PA 10..367 108..465 337 28.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21805-PA 484 GE21805-PA 1..483 1..476 2130 85.9 Plus
Dyak\GE14227-PA 453 GE14227-PA 30..447 55..469 524 30 Plus
Dyak\GE14226-PA 447 GE14226-PA 7..446 35..469 413 27 Plus
Dyak\GE14225-PA 407 GE14225-PA 6..400 35..424 308 23.2 Plus

LP11230.hyp Sequence

Translation from 34 to 1467

> LP11230.hyp
MNSFALYQDPLRGEVLKISGNQIGMSVVPRKLSFSDPILLRHILCLVIVV
HNSFHLILCCRQLKLCKRTSVPPKQMEGILSQEAFQASKDKQLHASSLEI
FNIAIDTLYSCLDLYLCTLAFLWKLTVGWYHYADSTWLNVTFMTVFSTYL
VVRKLPSLFYEKLVLDPRYNVDPEKTPPLLGLICALVFVVVFLQVAVIPL
TAIFMAIHMLSEWYFTLFVWLGLVGLSVLVLAFVGLFGVPCLGKSRKMNS
TDMDNSLKAVLDDFNFPGRVYMVHTFHVGRPTAWVMGCCCCLRLDIHDNL
KWNRGFSSDDFDWGQMGAGLNDEQLAAFVAHQLAHWQLWHVAKGLALIYF
YLLIYLLLFGICNRWITLYAAAGFTTFYPSSVGFWLVYKYLMPIYHDIST
WIVFFCIRHFEYAADAYVNRRGYGLPMRAALLKLFSDDYEFPYVDQCYLM
WHRLRPSVLQRIDNLQRLNMINGVSTA*

LP11230.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-PB 477 CG7573-PB 1..477 1..477 2564 100 Plus
ste24c-PC 456 CG9002-PC 11..448 36..470 595 30.2 Plus
ste24c-PD 456 CG9002-PD 11..448 36..470 595 30.2 Plus
ste24c-PA 456 CG9002-PA 11..448 36..470 595 30.2 Plus
ste24b-PA 447 CG9001-PA 6..443 34..466 444 26.8 Plus