Clone LP11503 Report

Search the DGRC for LP11503

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:115
Well:3
Vector:pOT2
Associated Gene/TranscriptFlo2-RM
Protein status:LP11503.pep: gold
Preliminary Size:2623
Sequenced Size:2621

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11547 2001-01-01 Release 2 assignment
CG32593 2001-11-02 Blastp of sequenced clone
CG32593 2003-01-01 Sim4 clustering to Release 3
Flo-2 2008-04-29 Release 5.5 accounting
Flo-2 2008-08-15 Release 5.9 accounting
Flo-2 2008-12-18 5.12 accounting

Clone Sequence Records

LP11503.complete Sequence

2621 bp (2621 high quality bases) assembled on 2001-11-02

GenBank Submission: AY069755

> LP11503.complete
AGAAAGAAAAGTACAGTCTGCAAAATAATAATACAAAGAAATTATCGAAA
TTTGAAACCATGTTGATCTCTGTGTTCTACTCTCTTTTTTCTCTACTTTC
TTTTCACCACCACCAAAATAAAAATCGACTTAAACCCTGCCGACCGATCG
TTCAACGTTCAACTCATCAACAAAAAAAAAAAAACCAAAACCAAAACTAA
TCCGCAACTAACTGTAACTGCAAACGAAATCAACAATAATTACCAAAACA
ATCAATATAAACACACCTACATGCATTCAAACAACAAATATCATTAAAAT
CTAAATTGTTCTACTCCAAAAAACAAAATACCACAAAAAATACTGCTCCT
CTACCGTTACTGCTACCGTTACTCTGCTCTGGTTGCTGCTGTTACCGTTA
TACTCCATGTATCGCTCTATATATCTCTATATTATAAATATATATATATA
TTTATATATCTCTGTTGCTCTGTCCATGTGTGCATGTGCGTGTGTGTGGG
TACAAAATATAATGCAAAAATATAAATATCTTCATAATAAATAAACGAAA
ACAAATATTTGTGATCCAAACTGAAAAATATATACAAAATCAATCAATCG
AACCTATAAAATGCCTTCACACACATGCACACCGACACGGGGACACTCAC
ACAACGAAACCACACACACACACACACACACACAAACACTCACACACACA
CACACAAACACTCTCACACACACACATAAACACAAACACGTACAGATGAT
GAATGTTTATTATTTCCACCATCAGGCCGACGAGCTTCTAGGCACTGCCA
GCGAGCAATTCCTTGGAAAGAGCGTCAAGGAGATCAAGCAGACGATCCTG
CAAACCCTCGAAGGACATTTGAGAGCCATATTGGGAACGCTTACAGTAGA
AGAGGTGTACAAGGACCGCGACCAATTCGCTGCCTTGGTGCGCGAGGTGG
CCGCACCGGACGTGGGTCGTATGGGCATCGAGATTCTCTCGTTTACGATC
AAGGACGTCTACGATGATGTGCAGTACCTGGCCTCGTTGGGCAAGGCCCA
GACCGCCGTGGTCAAGCGGGATGCAGATGCCGGCGTGGCGGAGGCCAATC
GAGATGCCGGTATCCGTGAGGCGGAGTGCGAAAAGAGCGCCATGGATGTG
AAATACTCGACGGACACGAAAATCGAGGACAACACCAGGATGTACAAGCT
GCAGAAGGCCAATTTCGATCAGGAGATCAACACGGCCAAGGCCGAATCGC
AGTTGGCCTACGAGCTGCAGGCAGCCAAGATCCGCCAGCGCATCCGTAAC
GAGGAGATTCAGATCGAGGTGGTGGAGCGACGCAAGCAGATCGAGATTGA
GTCGCAGGAAGTGCAGCGCAAGGATCGCGAGCTCACTGGCACAGTCAAGC
TGCCCGCCGAGGCCGAGGCCTTCCGCCTCCAGACCCTTGCGCAGGCCAAG
CAATGTCAGACCATCGAGGGTGCCCGTGCCGAGGCGGAGCGCATACGCAA
GATCGGATCGGCGGAGGCCCATGCCATCGAGTTGGTGGGCAAGGCGGAGG
CGGAACGCATGCGGATGAAGGCCCATGTGTACAAGCAGTACGGCGATGCA
GCAATTATGAATATTGTACTCGAATCGCTGCCCAAGATTGCCGCTGAGGT
GGCTGCACCACTGGCCAAAACCGATGAGATTGTCCTAATTGGCGGCAACG
ATAATATAACCAACGATGTGACTCGCTTGGTGGCCCAGCTACCGCCATCG
ATCAACGCCTTGACCGGAGTGGATTTGTCCAAGGTTCTGTCCAAGATACC
GGGGGCCAAGGCGTGAAACCTAATGGAATGGGATATCCAGGAAATGGCAA
TGACAACGTAACGCAGCGTAAAGGAATTGTAACCGATACAAAAACCAGAT
AAGGATAGACAACCGAATTAAGAAAGAGACGACAGGAAGCGACAAAATAA
GATGGCGATAGTTTGCTAAAGAGGGGGCGTGCATTTGTTAGAGAGAGAAA
GAGGGGAAACAGCGAAACGAACTTGAAAAACTCAAGTTTCGAAATGAAAT
CGAACGTGTAGCTAAATGTACTCCGATATTATAATATATTTATATATGAT
ATATATATATATATATCTATATATATATGTCTATATATATATATTTGTAT
ATTTATATGCACACATGCAATACACACATACACTTGTCTCGTCTGTGTGG
TGTCCTAGTGTGTGTGTGTGATGTTTGGCGGCGTAACAATCAAAAACAGA
ACACAAAAAACAACCAACGTTAATCTCAGCTAAAGTTATGCATTTCGAAC
GCAACATTTTGTGGCCTTTTCTCTCGAAAACGAAAAACCGATAACTATAA
CAAGAAATCAACGTGAAATTTGTATAACTTTAAAACGAAAACCATTTAAG
CAGAGTGTTAGCTATTTATTTACTATGCTATATATACTATATACATGCAG
ACTTGCTATACACAAAGAGCTCTTTCAATAAACACATAGAATTATATAAC
AGACAGTGTTGTACAGCATATATGTATTATTTTACAGTGCTGTAGAGATC
TGTATAAGTAGTCTCTCTCCATCTCCTTCTTATACAATTTCTATCTGCAA
CTAAAAAAAAAAAAAAAAAAA

LP11503.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
Flo-2-RC 2687 Flo-2-RC 1..2621 1..2621 13060 99.8 Plus
Flo-2.v 2978 Flo-2.v 1..2621 1..2621 13060 99.8 Plus
Flo-2.t 2824 Flo-2.t 68..1945 744..2621 9345 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14822262..14823229 1635..2602 4810 99.8 Plus
chrX 22417052 chrX 14816206..14817092 1..885 4340 99.5 Plus
chrX 22417052 chrX 14820962..14821530 884..1452 2845 100 Plus
chrX 22417052 chrX 14822018..14822201 1453..1636 920 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:55:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14932046..14933032 1635..2621 4890 99.7 Plus
X 23542271 X 14925991..14926875 1..885 4425 100 Plus
X 23542271 X 14930746..14931314 884..1452 2845 100 Plus
X 23542271 X 14931802..14931985 1453..1636 920 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14940144..14941130 1635..2621 4890 99.6 Plus
X 23527363 X 14934089..14934973 1..885 4425 100 Plus
X 23527363 X 14938844..14939412 884..1452 2845 100 Plus
X 23527363 X 14939900..14940083 1453..1636 920 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:15:59 has no hits.

LP11503.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:17:17 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14822264..14823229 1637..2602 99   Plus
chrX 14816206..14817091 1..884 99 -> Plus
chrX 14820963..14821530 885..1452 100 -> Plus
chrX 14822018..14822201 1453..1636 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:41:27 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 1..1206 611..1816 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:35:11 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 1..1206 611..1816 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:58:01 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 1..1206 611..1816 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:03:01 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 1..1206 611..1816 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:31:31 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
Flo2-RL 231..1323 770..1861 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:15:02 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 1..2602 1..2602 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:35:11 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 1..2602 1..2602 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:01 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 1..2602 1..2602 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:03:02 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 1..2602 1..2602 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:31:31 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
Flo2-RM 1..2602 1..2602 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:17 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
X 14925991..14926874 1..884 100 -> Plus
X 14930747..14931314 885..1452 100 -> Plus
X 14931802..14931985 1453..1636 100 -> Plus
X 14932048..14933013 1637..2602 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:17 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
X 14925991..14926874 1..884 100 -> Plus
X 14930747..14931314 885..1452 100 -> Plus
X 14931802..14931985 1453..1636 100 -> Plus
X 14932048..14933013 1637..2602 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:17 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
X 14925991..14926874 1..884 100 -> Plus
X 14930747..14931314 885..1452 100 -> Plus
X 14931802..14931985 1453..1636 100 -> Plus
X 14932048..14933013 1637..2602 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:01 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14820024..14820907 1..884 100 -> Plus
arm_X 14824780..14825347 885..1452 100 -> Plus
arm_X 14825835..14826018 1453..1636 100 -> Plus
arm_X 14826081..14827046 1637..2602 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:39:51 Download gff for LP11503.complete
Subject Subject Range Query Range Percent Splice Strand
X 14934089..14934972 1..884 100 -> Plus
X 14938845..14939412 885..1452 100 -> Plus
X 14939900..14940083 1453..1636 100 -> Plus
X 14940146..14941111 1637..2602 99   Plus

LP11503.pep Sequence

Translation from 610 to 1815

> LP11503.pep
MPSHTCTPTRGHSHNETTHTHTHTQTLTHTHTNTLTHTHKHKHVQMMNVY
YFHHQADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAILGTLTVEEVY
KDRDQFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAV
VKRDADAGVAEANRDAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKA
NFDQEINTAKAESQLAYELQAAKIRQRIRNEEIQIEVVERRKQIEIESQE
VQRKDRELTGTVKLPAEAEAFRLQTLAQAKQCQTIEGARAEAERIRKIGS
AEAHAIELVGKAEAERMRMKAHVYKQYGDAAIMNIVLESLPKIAAEVAAP
LAKTDEIVLIGGNDNITNDVTRLVAQLPPSINALTGVDLSKVLSKIPGAK
A*

LP11503.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19486-PA 438 GF19486-PA 85..438 48..401 1782 96.6 Plus
Dana\GF22637-PA 430 GF22637-PA 79..425 55..391 713 46.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17854-PA 438 GG17854-PA 88..438 51..401 1806 98.9 Plus
Dere\GG22345-PA 430 GG22345-PA 79..425 55..391 725 47 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12759-PA 432 GH12759-PA 73..432 42..401 1767 93.9 Plus
Dgri\GH20287-PA 430 GH20287-PA 79..425 55..391 713 46.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-PI 435 CG32593-PI 68..435 34..401 1758 97.6 Plus
Flo2-PJ 448 CG32593-PJ 92..448 45..401 1751 99.7 Plus
Flo2-PM 356 CG32593-PM 1..356 46..401 1749 100 Plus
Flo2-PA 438 CG32593-PA 88..438 51..401 1696 98.9 Plus
Flo2-PK 438 CG32593-PK 88..438 51..401 1696 98.9 Plus
Flo2-PE 438 CG32593-PE 88..438 51..401 1696 98.9 Plus
Flo2-PB 425 CG32593-PB 79..425 55..401 1689 99.7 Plus
Flo2-PF 425 CG32593-PF 79..425 55..401 1689 99.7 Plus
Flo2-PL 440 CG32593-PL 79..425 55..401 1689 99.7 Plus
Flo2-PG 340 CG32593-PG 22..340 79..401 1513 96.9 Plus
Flo2-PH 281 CG32593-PH 1..281 121..401 1372 100 Plus
Flo2-PD 281 CG32593-PD 1..281 121..401 1372 100 Plus
Flo1-PA 426 CG8200-PA 79..421 55..391 808 47.8 Plus
Flo1-PB 430 CG8200-PB 79..425 55..391 793 47.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15205-PA 429 GI15205-PA 79..429 51..401 1765 95.7 Plus
Dmoj\GI19457-PA 430 GI19457-PA 79..425 55..391 713 46.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27073-PA 425 GL27073-PA 72..425 48..401 1789 96.9 Plus
Dper\GL11508-PA 430 GL11508-PA 79..425 55..391 726 46.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23027-PA 438 GA23027-PA 88..438 51..401 1788 97.4 Plus
Dpse\GA20892-PA 430 GA20892-PA 79..425 55..391 726 46.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12049-PA 438 GM12049-PA 88..438 51..401 1806 98.9 Plus
Dsec\GM20133-PA 430 GM20133-PA 79..425 55..391 731 47.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\anon-381MEL-PA 438 GD17182-PA 88..438 51..401 1806 98.9 Plus
Dsim\GD25610-PA 430 GD25610-PA 79..425 55..391 731 47.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16615-PA 356 GJ16615-PA 1..356 46..401 1830 97.5 Plus
Dvir\GJ21208-PA 430 GJ21208-PA 79..425 55..391 712 45.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20117-PA 438 GK20117-PA 85..438 48..401 1782 96.6 Plus
Dwil\GK21951-PA 430 GK21951-PA 79..425 55..391 725 47 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17157-PA 438 GE17157-PA 88..438 51..401 1804 98.9 Plus
Dyak\GE14146-PA 430 GE14146-PA 79..425 55..391 726 47 Plus

LP11503.hyp Sequence

Translation from 610 to 1815

> LP11503.hyp
MPSHTCTPTRGHSHNETTHTHTHTQTLTHTHTNTLTHTHKHKHVQMMNVY
YFHHQADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAILGTLTVEEVY
KDRDQFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAV
VKRDADAGVAEANRDAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKA
NFDQEINTAKAESQLAYELQAAKIRQRIRNEEIQIEVVERRKQIEIESQE
VQRKDRELTGTVKLPAEAEAFRLQTLAQAKQCQTIEGARAEAERIRKIGS
AEAHAIELVGKAEAERMRMKAHVYKQYGDAAIMNIVLESLPKIAAEVAAP
LAKTDEIVLIGGNDNITNDVTRLVAQLPPSINALTGVDLSKVLSKIPGAK
A*

LP11503.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-PI 435 CG32593-PI 68..435 34..401 1758 97.6 Plus
Flo2-PJ 448 CG32593-PJ 92..448 45..401 1751 99.7 Plus
Flo2-PM 356 CG32593-PM 1..356 46..401 1749 100 Plus
Flo2-PA 438 CG32593-PA 88..438 51..401 1696 98.9 Plus
Flo2-PK 438 CG32593-PK 88..438 51..401 1696 98.9 Plus