Clone LP11520 Report

Search the DGRC for LP11520

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:115
Well:20
Vector:pOT2
Associated Gene/TranscriptCG5447-RA
Protein status:LP11520.pep: gold
Preliminary Size:1501
Sequenced Size:1439

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5447 2001-01-01 Release 2 assignment
CG5447 2001-10-10 Blastp of sequenced clone
CG5447 2003-01-01 Sim4 clustering to Release 3
CG5447 2008-04-29 Release 5.5 accounting

Clone Sequence Records

LP11520.complete Sequence

1439 bp (1439 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061563

> LP11520.complete
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGGAATTTGAGGCAATTAGGGCATTC
CTGTGAGCTTTTCCAGGCCAACTGCGATTACTTCAAGCCAAGACAAACAG
CGACAACATGTCCCAAGGCGGTGGCACTACTCCAGCGGGCGGTAATCCCA
CAGCGCTCCAGGCGACCGGAGGGGGCGTGGTCTTCAGCAAGGTCTTCATC
CAGCGCGATTACAGCGAGGGCACCTCCGTCAAGTTCCATACACGGCTGCC
CGCTGAGCTGGAGGGCATGATTGAAAGACACGTCTTCGAGGCCACCATCA
ATAGGCTAAACGAGTTCTACGCCGAGGCGGAGGAGGGATCCTGCGGCACC
TATTGCGAGGGCTGCATTGGCTGCATCACGGCCTACTTGATCTATATGTG
CTCCGAAACGCACTATGAAAAGACCCTTCGCAAGATATCCAAATTTGTGG
CTTCCCAAAATGAACGCATTTACAACACCAAGGGACTGCAGCTGATCGAT
CCCACTTATCGGGGACTTCGCGTCATAGAGATTACAATATTCGATCGTCC
GGGGCGAACGTGACTTCCGCTTTCCCATTCAGCCAACGAGTTTTTCATGT
GAGATCGAGCAGCTACAGTCGCATCAACAGGCATGTGAAGGAGAAGAGTC
CGTTTCAGCAATTATCAAGCAAAAGTCAGCGCCATCAGAGTGCGTTTCCA
AAAATATAAATCAATAAAAAGCTGTGGAAGCAGCTAAAGCTTTATAACCT
ATAACCATATGTCTTGGCAAAAGCAGTGGCCAGAGCGTTTTCGGGGCATG
CGACTTAGTCACGGGTGTGCTGGTAGATGTGCCTCCGCTGCAGCCACATA
CTGTATGCTAGATTAGCCGTTAATGATTAGCCAAGGCAGTGTACGGCCAG
TTAGTTAGTATTTATGCAATAGCAGGCATAGTCATGTAAGTGAAAAGCTA
CCGAAACTGCATTTTGAGCCGAAGCAAGAAGCATCAACATATACACACAT
TCGCATATGTTACAATTGTTTTATTAATCGGACCGAAAGGCCAGCGAGAA
TTGATTGTTTTGTAATTTGAAAATGAATAGAATTGTATACATCATGTTTG
TAGTAGTTGCCAACAATTCGATTGTCTAATGTTGTAATTTCAATATGGCA
TTAACATTTGCATAAATACACACACACATAGTTCAAGCTTAATCAGACAT
AATGCATACGCATAACTTTTTCTATACAATACTTACCGATTTCAAACAGC
GCCAAATGAACTTACACATAAATCGAATCGAGAATCGTTCGATATTTAAT
ATAAATCAGCAACATTGATTAACATAGTTATATATCTTATAAGAAAAATA
TATATATTGCCGTCATTTAAAAAAAAAAAAAAAAAAAAA

LP11520.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-RA 1501 CG5447-RA 84..1430 75..1421 6735 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22277002..22277596 813..1407 2975 100 Plus
chr3R 27901430 chr3R 22276589..22276930 471..812 1710 100 Plus
chr3R 27901430 chr3R 22275881..22276052 148..319 785 97.1 Plus
chr3R 27901430 chr3R 22276118..22276271 319..472 770 100 Plus
chr3R 27901430 chr3R 22275610..22275687 75..150 295 94.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:55:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26453980..26454588 813..1421 3045 100 Plus
3R 32079331 3R 26453567..26453908 471..812 1710 100 Plus
3R 32079331 3R 26452851..26453022 148..319 860 100 Plus
3R 32079331 3R 26453088..26453241 319..472 770 100 Plus
3R 32079331 3R 26452582..26452657 75..150 380 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26194811..26195419 813..1421 3045 100 Plus
3R 31820162 3R 26194398..26194739 471..812 1710 100 Plus
3R 31820162 3R 26193682..26193853 148..319 860 100 Plus
3R 31820162 3R 26193919..26194072 319..472 770 100 Plus
3R 31820162 3R 26193413..26193488 75..150 380 100 Plus
Blast to na_te.dros performed 2019-03-16 04:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Newton 1510 Dbuz\Newton NEWTON 1510bp 584..732 1126..1268 127 58.9 Plus
Dwil\Mar 610 Dwil\Mar MAR 610bp Derived from AF518731. 257..320 1407..1344 122 65.6 Minus
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 700..896 1272..1087 116 55.7 Minus

LP11520.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:39:16 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22275610..22275687 75..150 94 -> Plus
chr3R 22275884..22276052 151..319 97 -> Plus
chr3R 22276119..22276271 320..472 100 -> Plus
chr3R 22276591..22276930 473..812 100 -> Plus
chr3R 22277002..22277609 813..1418 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:41:28 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 1..456 158..613 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:38:48 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 1..456 158..613 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:37:38 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RB 1..495 158..652 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:07:39 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 1..456 158..613 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:47:01 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RB 1..495 158..652 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:19:57 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 50..1393 75..1418 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:38:48 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 49..1392 75..1418 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:38 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 49..1392 75..1418 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:07:39 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 50..1393 75..1418 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:47:01 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 49..1392 75..1418 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:39:16 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26452582..26452657 75..150 100 -> Plus
3R 26452854..26453022 151..319 100 -> Plus
3R 26453089..26453241 320..472 100 -> Plus
3R 26453569..26453908 473..812 100 -> Plus
3R 26453980..26454585 813..1418 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:39:16 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26452582..26452657 75..150 100 -> Plus
3R 26452854..26453022 151..319 100 -> Plus
3R 26453089..26453241 320..472 100 -> Plus
3R 26453569..26453908 473..812 100 -> Plus
3R 26453980..26454585 813..1418 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:39:16 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26452582..26452657 75..150 100 -> Plus
3R 26452854..26453022 151..319 100 -> Plus
3R 26453089..26453241 320..472 100 -> Plus
3R 26453569..26453908 473..812 100 -> Plus
3R 26453980..26454585 813..1418 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:38 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22278304..22278379 75..150 100 -> Plus
arm_3R 22278576..22278744 151..319 100 -> Plus
arm_3R 22278811..22278963 320..472 100 -> Plus
arm_3R 22279291..22279630 473..812 100 -> Plus
arm_3R 22279702..22280307 813..1418 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:43:48 Download gff for LP11520.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26194400..26194739 473..812 100 -> Plus
3R 26194811..26195416 813..1418 100   Plus
3R 26193413..26193488 75..150 100 -> Plus
3R 26193685..26193853 151..319 100 -> Plus
3R 26193920..26194072 320..472 100 -> Plus

LP11520.pep Sequence

Translation from 157 to 612

> LP11520.pep
MSQGGGTTPAGGNPTALQATGGGVVFSKVFIQRDYSEGTSVKFHTRLPAE
LEGMIERHVFEATINRLNEFYAEAEEGSCGTYCEGCIGCITAYLIYMCSE
THYEKTLRKISKFVASQNERIYNTKGLQLIDPTYRGLRVIEITIFDRPGR
T*

LP11520.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16123-PA 178 GF16123-PA 40..178 13..151 714 95.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11479-PA 177 GG11479-PA 27..177 1..151 789 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14188-PA 148 GH14188-PA 1..148 1..151 689 88.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-PA 151 CG5447-PA 1..151 1..151 797 100 Plus
CG5447-PB 164 CG5447-PB 1..151 1..151 797 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22098-PA 143 GI22098-PA 1..143 1..151 668 87.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23365-PA 185 GL23365-PA 27..151 1..126 560 91.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18888-PA 150 GA18888-PA 1..150 1..151 683 92.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10323-PA 177 GM10323-PA 27..177 1..151 795 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21284-PA 98 GD21284-PA 1..98 54..151 516 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24212-PA 143 GJ24212-PA 1..143 1..151 677 88.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11740-PA 150 GK11740-PA 1..150 1..151 726 91.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23670-PA 177 GE23670-PA 27..177 1..151 796 98.7 Plus

LP11520.hyp Sequence

Translation from 157 to 612

> LP11520.hyp
MSQGGGTTPAGGNPTALQATGGGVVFSKVFIQRDYSEGTSVKFHTRLPAE
LEGMIERHVFEATINRLNEFYAEAEEGSCGTYCEGCIGCITAYLIYMCSE
THYEKTLRKISKFVASQNERIYNTKGLQLIDPTYRGLRVIEITIFDRPGR
T*

LP11520.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-PA 151 CG5447-PA 1..151 1..151 797 100 Plus
CG5447-PB 164 CG5447-PB 1..151 1..151 797 100 Plus