BDGP Sequence Production Resources |
Search the DGRC for LP11638
Library: | LP |
Tissue Source: | Drosophila melanogaster larval-early pupal |
Created by: | Ling Hong |
Date Registered: | 1998-06-11 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 116 |
Well: | 38 |
Vector: | pOT2 |
Associated Gene/Transcript | Ddc-RC |
Protein status: | LP11638.pep: gold |
Sequenced Size: | 2088 |
Gene | Date | Evidence |
---|---|---|
Ddc-RD | 2010-06-23 | Manual selection by Sue Celniker |
2088 bp assembled on 2011-02-17
GenBank Submission: BT126038.1
> LP11638.complete AGAACGCCAAGCGCACAGCAATCAGCACCGAAATATCAGCATCGAAATAT CAGCAAATAAATATTAGCTGTTCTAAACCAGGAGGGCAAACTGAACTTGG AGCAAAGATTTAGTTCGGAACGGAAGTAAAGCTCGGCAACAAGTGCAAAC AATTAAAAGCAGTTAACTAAAGTGCAACGCTCTAACCATTCGAGTTCATA TCATTGCAAAAGTCAAACGAAAAGTAAATCTCTGAAATGAGCCACATACC CATTAGTAACACAATTCCAACAAAACAAACTGATGGTAATGGTAAAGCTA ACATTTCGCCGGATAAGCTGGATCCCAAGGTTTCGATCGACATGGAGGCG CCGGAGTTCAAGGATTTTGCCAAGACAATGGTCGACTTTATAGCCGAATA TCTGGAGAATATACGCGAAAGGCGCGTTCTGCCGGAAGTGAAGCCTGGCT ACCTGAAGCCATTGATTCCGGATGCTGCGCCCGAGAAGCCGGAGAAGTGG CAGGATGTGATGCAGGACATCGAGCGAGTCATCATGCCGGGCGTGACACA CTGGCACAGTCCCAAGTTTCATGCCTACTTCCCCACGGCCAACTCGTATC CAGCGATCGTTGCGGACATGCTGAGTGGAGCGATTGCCTGCATCGGATTC ACGTGGATCGCCAGTCCCGCGTGCACGGAACTCGAGGTGGTCATGATGGA TTGGCTGGGCAAGATGCTGGAGCTGCCGGCAGAGTTCCTGGCCTGTTCGG GCGGCAAGGGTGGCGGTGTCATCCAGGGCACGGCCAGTGAGTCCACACTG GTGGCTCTGCTGGGAGCCAAGGCCAAGAAGTTGAAGGAGGTGAAGGAGCT CCATCCGGAGTGGGATGAGCACACCATCTTGGGCAAGTTGGTGGGCTACT GCTCGGACCAGGCTCACTCATCCGTGGAGCGGGCTGGTCTTCTGGGCGGA GTAAAGCTCCGTTCCGTGCAGTCCGAGAATCACAGAATGCGTGGTGCTGC CCTGGAAAAGGCCATCGAACAGGATGTGGCCGAGGGTTTGATTCCCTTCT ACGCGGTGGTCACCCTGGGCACCACCAACTCCTGCGCCTTCGACTACTTG GATGAGTGTGGACCGGTGGGAAACAAGCACAATTTGTGGATCCATGTGGA CGCTGCCTATGCCGGATCCGCTTTCATTTGCCCCGAGTATCGCCACCTGA TGAAGGGCATCGAATCAGCAGACTCTTTCAATTTCAATCCACACAAATGG ATGCTGGTGAACTTTGACTGCTCGGCCATGTGGCTGAAGGATCCCAGTTG GGTGGTCAACGCGTTCAATGTGGACCCTCTTTACCTGAAGCACGACATGC AGGGATCAGCTCCGGACTATCGTCACTGGCAAATCCCACTTGGACGGCGA TTCAGGGCACTGAAGCTCTGGTTCGTCCTCCGGCTGTACGGTGTCGAGAA TCTCCAGGCCCACATCCGCAGACACTGCAACTTTGCCAAGCAGTTCGGGG ATCTCTGCGTGGCGGACTCCAGATTTGAACTGGCCGCCGAGATCAATATG GGATTGGTCTGCTTCCGGCTGAAGGGCAGCAACGAGCGGAACGAAGCTCT TCTCAAGCGAATCAATGGACGCGGCCACATCCACTTGGTTCCCGCCAAGA TCAAGGATGTCTACTTCCTGCGCATGGCCATTTGCTCGCGATTCACCCAG TCCGAGGACATGGAGTACTCGTGGAAGGAGGTCAGCGCCGCTGCCGACGA GATGGAACAGGAGCAGTAAAGTGGTTGTGCAGGTCTGTTCCGTGTTTAGT ATATAAATTAATATAGTAAACTTAAATTGGACCAGTATGATATATAATGC ATTGTGACTTGGAACCCGGAACAGACCATACACTTTCCACTTGCGACATG TTTAGGGAATTTACATCGCAACAAAAGATGGTTCGTCCATCGCTACATTA TATTTATAGTATCCTATCATTGTATCATTGATGTTGTTCATGATTTTTAT TGTTAACGTTATGCGCCTAATTAAAACAAATGTATTCTGCTTAAAAATAC AAACGAATTGTAACTATAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 19115070..19116717 | 2067..420 | 8225 | 99.9 | Minus |
chr2L | 23010047 | chr2L | 19118701..19118879 | 179..1 | 895 | 100 | Minus |
chr2L | 23010047 | chr2L | 19117910..19118066 | 335..179 | 785 | 100 | Minus |
chr2L | 23010047 | chr2L | 19117746..19117833 | 422..335 | 440 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19116480..19118130 | 2070..420 | 8255 | 100 | Minus |
2L | 23513712 | 2L | 19120110..19120288 | 179..1 | 895 | 100 | Minus |
2L | 23513712 | 2L | 19119319..19119475 | 335..179 | 785 | 100 | Minus |
2L | 23513712 | 2L | 19119155..19119242 | 422..335 | 440 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19116480..19118130 | 2070..420 | 8255 | 100 | Minus |
2L | 23513712 | 2L | 19120110..19120288 | 179..1 | 895 | 100 | Minus |
2L | 23513712 | 2L | 19119319..19119475 | 335..179 | 785 | 100 | Minus |
2L | 23513712 | 2L | 19119155..19119242 | 422..335 | 440 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 19115070..19116715 | 422..2067 | 99 | <- | Minus |
chr2L | 19117747..19117832 | 336..421 | 100 | <- | Minus |
chr2L | 19117910..19118065 | 180..335 | 100 | <- | Minus |
chr2L | 19118701..19118879 | 1..179 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ddc-RC | 1..1533 | 237..1769 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ddc-RC | 1..1533 | 237..1769 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ddc-RC | 1..1533 | 237..1769 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ddc-RC | 13..2079 | 1..2067 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ddc-RC | 19..2085 | 1..2067 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ddc-RC | 19..2085 | 1..2067 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19116483..19118128 | 422..2067 | 100 | <- | Minus |
2L | 19119156..19119241 | 336..421 | 100 | <- | Minus |
2L | 19119319..19119474 | 180..335 | 100 | <- | Minus |
2L | 19120110..19120288 | 1..179 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19116483..19118128 | 422..2067 | 100 | <- | Minus |
2L | 19119156..19119241 | 336..421 | 100 | <- | Minus |
2L | 19119319..19119474 | 180..335 | 100 | <- | Minus |
2L | 19120110..19120288 | 1..179 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19116483..19118128 | 422..2067 | 100 | <- | Minus |
2L | 19119156..19119241 | 336..421 | 100 | <- | Minus |
2L | 19119319..19119474 | 180..335 | 100 | <- | Minus |
2L | 19120110..19120288 | 1..179 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 19116483..19118128 | 422..2067 | 100 | <- | Minus |
arm_2L | 19119156..19119241 | 336..421 | 100 | <- | Minus |
arm_2L | 19119319..19119474 | 180..335 | 100 | <- | Minus |
arm_2L | 19120110..19120288 | 1..179 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19120110..19120288 | 1..179 | 100 | Minus | |
2L | 19116483..19118128 | 422..2067 | 100 | <- | Minus |
2L | 19119156..19119241 | 336..421 | 100 | <- | Minus |
2L | 19119319..19119474 | 180..335 | 100 | <- | Minus |
Translation from 236 to 1768
> LP11638.pep MSHIPISNTIPTKQTDGNGKANISPDKLDPKVSIDMEAPEFKDFAKTMVD FIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIM PGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELE VVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLK EVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNL WIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWL KDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRL YGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNE RNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVS AAADEMEQEQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15210-PA | 510 | GF15210-PA | 1..510 | 1..510 | 2569 | 93.9 | Plus |
Dana\GF12784-PA | 876 | GF12784-PA | 1..476 | 36..509 | 1426 | 52.5 | Plus |
Dana\GF14702-PA | 508 | GF14702-PA | 1..478 | 36..510 | 1388 | 53.3 | Plus |
Dana\GF13800-PA | 637 | GF13800-PA | 1..479 | 36..510 | 1384 | 52.2 | Plus |
Dana\GF13801-PA | 600 | GF13801-PA | 1..472 | 36..506 | 1189 | 47 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21650-PA | 510 | GG21650-PA | 1..510 | 1..510 | 2696 | 97.8 | Plus |
Dere\GG24151-PA | 847 | GG24151-PA | 1..476 | 36..509 | 1432 | 52.7 | Plus |
Dere\GG10812-PA | 637 | GG10812-PA | 1..479 | 36..510 | 1369 | 51.8 | Plus |
Dere\amd-PA | 510 | GG21159-PA | 1..478 | 36..510 | 1242 | 48.1 | Plus |
Dere\GG10813-PA | 587 | GG10813-PA | 1..472 | 36..506 | 1183 | 46.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13483-PA | 516 | GH13483-PA | 1..511 | 1..510 | 2394 | 86.5 | Plus |
Dgri\GH21773-PA | 816 | GH21773-PA | 1..477 | 36..506 | 1415 | 53.7 | Plus |
Dgri\GH20147-PA | 638 | GH20147-PA | 1..479 | 36..510 | 1370 | 52 | Plus |
Dgri\GH13435-PA | 615 | GH13435-PA | 109..575 | 36..499 | 1302 | 51 | Plus |
Dgri\GH20148-PA | 588 | GH20148-PA | 1..472 | 36..506 | 1177 | 46.7 | Plus |
Dgri\GH13435-PA | 615 | GH13435-PA | 1..105 | 36..140 | 277 | 41.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ddc-PC | 510 | CG10697-PC | 1..510 | 1..510 | 2727 | 100 | Plus |
Ddc-PD | 475 | CG10697-PD | 1..475 | 36..510 | 2544 | 100 | Plus |
Ddc-PB | 475 | CG10697-PB | 1..475 | 36..510 | 2544 | 100 | Plus |
Hdc-PD | 847 | CG3454-PD | 1..476 | 36..509 | 1390 | 52.5 | Plus |
Hdc-PC | 619 | CG3454-PC | 1..476 | 36..509 | 1390 | 52.5 | Plus |
Hdc-PB | 847 | CG3454-PB | 1..476 | 36..509 | 1390 | 52.5 | Plus |
Hdc-PA | 847 | CG3454-PA | 1..476 | 36..509 | 1390 | 52.5 | Plus |
Tdc2-PA | 637 | CG30446-PA | 1..479 | 36..510 | 1342 | 51.8 | Plus |
amd-PA | 510 | CG10501-PA | 1..478 | 36..510 | 1334 | 52.1 | Plus |
amd-PB | 510 | CG10501-PB | 1..478 | 36..510 | 1240 | 48.1 | Plus |
Tdc1-PA | 587 | CG30445-PA | 1..472 | 36..506 | 1137 | 46.4 | Plus |
b-PC | 514 | CG7811-PC | 9..514 | 16..506 | 331 | 25.3 | Plus |
b-PB | 575 | CG7811-PB | 70..575 | 16..506 | 331 | 25.3 | Plus |
b-PA | 575 | CG7811-PA | 70..575 | 16..506 | 331 | 25.3 | Plus |
Gad1-PD | 510 | CG14994-PD | 31..394 | 39..407 | 302 | 27.3 | Plus |
Gad1-PC | 510 | CG14994-PC | 31..394 | 39..407 | 302 | 27.3 | Plus |
Gad1-PA | 510 | CG14994-PA | 31..394 | 39..407 | 302 | 27.3 | Plus |
Gad1-PB | 510 | CG14994-PB | 31..394 | 39..407 | 302 | 27.3 | Plus |
CG5618-PA | 510 | CG5618-PA | 47..424 | 61..443 | 237 | 24.9 | Plus |
CG5618-PE | 346 | CG5618-PE | 26..260 | 218..443 | 222 | 28.9 | Plus |
CG5618-PD | 346 | CG5618-PD | 26..260 | 218..443 | 222 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17235-PA | 516 | GI17235-PA | 1..511 | 1..510 | 2345 | 84.9 | Plus |
Dmoj\GI19320-PA | 817 | GI19320-PA | 1..477 | 36..506 | 1406 | 53 | Plus |
Dmoj\GI20238-PA | 659 | GI20238-PA | 1..479 | 36..510 | 1371 | 52 | Plus |
Dmoj\GI13977-PA | 507 | GI13977-PA | 1..478 | 36..510 | 1347 | 51.5 | Plus |
Dmoj\GI20239-PA | 583 | GI20239-PA | 1..472 | 36..506 | 1184 | 46.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21129-PA | 515 | GL21129-PA | 1..504 | 1..499 | 2403 | 88.5 | Plus |
Dper\GL11582-PA | 843 | GL11582-PA | 1..478 | 36..509 | 1410 | 53.3 | Plus |
Dper\GL10988-PA | 635 | GL10988-PA | 1..479 | 36..510 | 1374 | 52.2 | Plus |
Dper\GL21186-PA | 436 | GL21186-PA | 1..436 | 36..468 | 1259 | 53 | Plus |
Dper\GL10989-PA | 593 | GL10989-PA | 1..476 | 36..510 | 1174 | 45.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Ddc-PA | 515 | GA10503-PA | 1..504 | 1..499 | 2403 | 88.5 | Plus |
Dpse\GA17460-PA | 843 | GA17460-PA | 1..478 | 36..509 | 1409 | 53.3 | Plus |
Dpse\GA15851-PA | 635 | GA15851-PA | 1..479 | 36..510 | 1370 | 52 | Plus |
Dpse\amd-PA | 510 | GA10357-PA | 1..467 | 36..499 | 1263 | 49.3 | Plus |
Dpse\GA15850-PA | 593 | GA15850-PA | 1..476 | 36..510 | 1174 | 45.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17029-PA | 510 | GM17029-PA | 1..510 | 1..510 | 2722 | 98.2 | Plus |
Dsec\GM21194-PA | 847 | GM21194-PA | 1..476 | 36..509 | 1432 | 52.7 | Plus |
Dsec\GM20861-PA | 638 | GM20861-PA | 1..479 | 36..510 | 1364 | 51.6 | Plus |
Dsec\GM17326-PA | 510 | GM17326-PA | 1..478 | 36..510 | 1243 | 48.1 | Plus |
Dsec\GM20862-PA | 587 | GM20862-PA | 1..476 | 36..510 | 1180 | 46 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Ddc-PA | 510 | GD21778-PA | 1..510 | 1..510 | 2748 | 99.6 | Plus |
Dsim\GD10721-PA | 847 | GD10721-PA | 1..476 | 36..509 | 1435 | 52.7 | Plus |
Dsim\amd-PA | 510 | GD24184-PA | 1..478 | 36..510 | 1244 | 47.9 | Plus |
Dsim\GD10312-PA | 416 | GD10312-PA | 1..405 | 36..437 | 1192 | 53.1 | Plus |
Dsim\GD10313-PA | 587 | GD10313-PA | 1..476 | 36..510 | 1180 | 46 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Ddc-PA | 504 | GJ17995-PA | 4..496 | 14..507 | 2348 | 88.3 | Plus |
Dvir\GJ22198-PA | 825 | GJ22198-PA | 1..476 | 36..509 | 1413 | 53.2 | Plus |
Dvir\GJ20190-PA | 649 | GJ20190-PA | 1..479 | 36..510 | 1378 | 52.4 | Plus |
Dvir\amd-PA | 507 | GJ18241-PA | 1..478 | 36..510 | 1351 | 51 | Plus |
Dvir\GJ20191-PA | 582 | GJ20191-PA | 1..472 | 36..506 | 1187 | 47.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\Ddc-PA | 511 | GK24237-PA | 1..508 | 1..507 | 2477 | 90.4 | Plus |
Dwil\GK17782-PA | 806 | GK17782-PA | 1..476 | 36..509 | 1438 | 53.2 | Plus |
Dwil\GK23145-PA | 641 | GK23145-PA | 1..479 | 36..510 | 1377 | 52 | Plus |
Dwil\amd-PA | 513 | GK24791-PA | 1..478 | 36..510 | 1285 | 49.2 | Plus |
Dwil\GK23146-PA | 589 | GK23146-PA | 1..472 | 36..506 | 1185 | 46.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12670-PA | 513 | GE12670-PA | 1..513 | 1..510 | 2696 | 97.3 | Plus |
Dyak\GE19346-PA | 849 | GE19346-PA | 1..476 | 36..509 | 1433 | 52.7 | Plus |
Dyak\GE24598-PA | 632 | GE24598-PA | 1..479 | 36..510 | 1371 | 51.8 | Plus |
Dyak\GE13232-PA | 510 | GE13232-PA | 1..478 | 36..510 | 1244 | 48.3 | Plus |
Dyak\GE24609-PA | 587 | GE24609-PA | 1..472 | 36..506 | 1186 | 46.6 | Plus |
Translation from 236 to 1768
> LP11638.hyp MSHIPISNTIPTKQTDGNGKANISPDKLDPKVSIDMEAPEFKDFAKTMVD FIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIM PGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELE VVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLK EVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNL WIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWL KDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRL YGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNE RNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVS AAADEMEQEQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ddc-PC | 510 | CG10697-PC | 1..510 | 1..510 | 2727 | 100 | Plus |
Ddc-PD | 475 | CG10697-PD | 1..475 | 36..510 | 2544 | 100 | Plus |
Ddc-PB | 475 | CG10697-PB | 1..475 | 36..510 | 2544 | 100 | Plus |
Hdc-PC | 619 | CG3454-PC | 1..476 | 36..509 | 1390 | 52.5 | Plus |
Hdc-PD | 847 | CG3454-PD | 1..476 | 36..509 | 1390 | 52.5 | Plus |