Clone LP11638 Report

Search the DGRC for LP11638

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:116
Well:38
Vector:pOT2
Associated Gene/TranscriptDdc-RC
Protein status:LP11638.pep: gold
Sequenced Size:2088

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Ddc-RD 2010-06-23 Manual selection by Sue Celniker

Clone Sequence Records

LP11638.complete Sequence

2088 bp assembled on 2011-02-17

GenBank Submission: BT126038.1

> LP11638.complete
AGAACGCCAAGCGCACAGCAATCAGCACCGAAATATCAGCATCGAAATAT
CAGCAAATAAATATTAGCTGTTCTAAACCAGGAGGGCAAACTGAACTTGG
AGCAAAGATTTAGTTCGGAACGGAAGTAAAGCTCGGCAACAAGTGCAAAC
AATTAAAAGCAGTTAACTAAAGTGCAACGCTCTAACCATTCGAGTTCATA
TCATTGCAAAAGTCAAACGAAAAGTAAATCTCTGAAATGAGCCACATACC
CATTAGTAACACAATTCCAACAAAACAAACTGATGGTAATGGTAAAGCTA
ACATTTCGCCGGATAAGCTGGATCCCAAGGTTTCGATCGACATGGAGGCG
CCGGAGTTCAAGGATTTTGCCAAGACAATGGTCGACTTTATAGCCGAATA
TCTGGAGAATATACGCGAAAGGCGCGTTCTGCCGGAAGTGAAGCCTGGCT
ACCTGAAGCCATTGATTCCGGATGCTGCGCCCGAGAAGCCGGAGAAGTGG
CAGGATGTGATGCAGGACATCGAGCGAGTCATCATGCCGGGCGTGACACA
CTGGCACAGTCCCAAGTTTCATGCCTACTTCCCCACGGCCAACTCGTATC
CAGCGATCGTTGCGGACATGCTGAGTGGAGCGATTGCCTGCATCGGATTC
ACGTGGATCGCCAGTCCCGCGTGCACGGAACTCGAGGTGGTCATGATGGA
TTGGCTGGGCAAGATGCTGGAGCTGCCGGCAGAGTTCCTGGCCTGTTCGG
GCGGCAAGGGTGGCGGTGTCATCCAGGGCACGGCCAGTGAGTCCACACTG
GTGGCTCTGCTGGGAGCCAAGGCCAAGAAGTTGAAGGAGGTGAAGGAGCT
CCATCCGGAGTGGGATGAGCACACCATCTTGGGCAAGTTGGTGGGCTACT
GCTCGGACCAGGCTCACTCATCCGTGGAGCGGGCTGGTCTTCTGGGCGGA
GTAAAGCTCCGTTCCGTGCAGTCCGAGAATCACAGAATGCGTGGTGCTGC
CCTGGAAAAGGCCATCGAACAGGATGTGGCCGAGGGTTTGATTCCCTTCT
ACGCGGTGGTCACCCTGGGCACCACCAACTCCTGCGCCTTCGACTACTTG
GATGAGTGTGGACCGGTGGGAAACAAGCACAATTTGTGGATCCATGTGGA
CGCTGCCTATGCCGGATCCGCTTTCATTTGCCCCGAGTATCGCCACCTGA
TGAAGGGCATCGAATCAGCAGACTCTTTCAATTTCAATCCACACAAATGG
ATGCTGGTGAACTTTGACTGCTCGGCCATGTGGCTGAAGGATCCCAGTTG
GGTGGTCAACGCGTTCAATGTGGACCCTCTTTACCTGAAGCACGACATGC
AGGGATCAGCTCCGGACTATCGTCACTGGCAAATCCCACTTGGACGGCGA
TTCAGGGCACTGAAGCTCTGGTTCGTCCTCCGGCTGTACGGTGTCGAGAA
TCTCCAGGCCCACATCCGCAGACACTGCAACTTTGCCAAGCAGTTCGGGG
ATCTCTGCGTGGCGGACTCCAGATTTGAACTGGCCGCCGAGATCAATATG
GGATTGGTCTGCTTCCGGCTGAAGGGCAGCAACGAGCGGAACGAAGCTCT
TCTCAAGCGAATCAATGGACGCGGCCACATCCACTTGGTTCCCGCCAAGA
TCAAGGATGTCTACTTCCTGCGCATGGCCATTTGCTCGCGATTCACCCAG
TCCGAGGACATGGAGTACTCGTGGAAGGAGGTCAGCGCCGCTGCCGACGA
GATGGAACAGGAGCAGTAAAGTGGTTGTGCAGGTCTGTTCCGTGTTTAGT
ATATAAATTAATATAGTAAACTTAAATTGGACCAGTATGATATATAATGC
ATTGTGACTTGGAACCCGGAACAGACCATACACTTTCCACTTGCGACATG
TTTAGGGAATTTACATCGCAACAAAAGATGGTTCGTCCATCGCTACATTA
TATTTATAGTATCCTATCATTGTATCATTGATGTTGTTCATGATTTTTAT
TGTTAACGTTATGCGCCTAATTAAAACAAATGTATTCTGCTTAAAAATAC
AAACGAATTGTAACTATAAAAAAAAAAAAAAAAAAAAA

LP11638.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19115070..19116717 2067..420 8225 99.9 Minus
chr2L 23010047 chr2L 19118701..19118879 179..1 895 100 Minus
chr2L 23010047 chr2L 19117910..19118066 335..179 785 100 Minus
chr2L 23010047 chr2L 19117746..19117833 422..335 440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19116480..19118130 2070..420 8255 100 Minus
2L 23513712 2L 19120110..19120288 179..1 895 100 Minus
2L 23513712 2L 19119319..19119475 335..179 785 100 Minus
2L 23513712 2L 19119155..19119242 422..335 440 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19116480..19118130 2070..420 8255 100 Minus
2L 23513712 2L 19120110..19120288 179..1 895 100 Minus
2L 23513712 2L 19119319..19119475 335..179 785 100 Minus
2L 23513712 2L 19119155..19119242 422..335 440 100 Minus
Blast to na_te.dros performed on 2019-03-17 01:40:52 has no hits.

LP11638.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:41:54 Download gff for LP11638.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19115070..19116715 422..2067 99 <- Minus
chr2L 19117747..19117832 336..421 100 <- Minus
chr2L 19117910..19118065 180..335 100 <- Minus
chr2L 19118701..19118879 1..179 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-02-17 10:26:58 Download gff for LP11638.complete
Subject Subject Range Query Range Percent Splice Strand
Ddc-RC 1..1533 237..1769 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:48:13 Download gff for LP11638.complete
Subject Subject Range Query Range Percent Splice Strand
Ddc-RC 1..1533 237..1769 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:06:44 Download gff for LP11638.complete
Subject Subject Range Query Range Percent Splice Strand
Ddc-RC 1..1533 237..1769 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:26:58 Download gff for LP11638.complete
Subject Subject Range Query Range Percent Splice Strand
Ddc-RC 13..2079 1..2067 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:48:13 Download gff for LP11638.complete
Subject Subject Range Query Range Percent Splice Strand
Ddc-RC 19..2085 1..2067 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:06:44 Download gff for LP11638.complete
Subject Subject Range Query Range Percent Splice Strand
Ddc-RC 19..2085 1..2067 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:41:54 Download gff for LP11638.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19116483..19118128 422..2067 100 <- Minus
2L 19119156..19119241 336..421 100 <- Minus
2L 19119319..19119474 180..335 100 <- Minus
2L 19120110..19120288 1..179 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:41:54 Download gff for LP11638.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19116483..19118128 422..2067 100 <- Minus
2L 19119156..19119241 336..421 100 <- Minus
2L 19119319..19119474 180..335 100 <- Minus
2L 19120110..19120288 1..179 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:41:54 Download gff for LP11638.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19116483..19118128 422..2067 100 <- Minus
2L 19119156..19119241 336..421 100 <- Minus
2L 19119319..19119474 180..335 100 <- Minus
2L 19120110..19120288 1..179 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:48:13 Download gff for LP11638.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19116483..19118128 422..2067 100 <- Minus
arm_2L 19119156..19119241 336..421 100 <- Minus
arm_2L 19119319..19119474 180..335 100 <- Minus
arm_2L 19120110..19120288 1..179 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:58:25 Download gff for LP11638.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19120110..19120288 1..179 100   Minus
2L 19116483..19118128 422..2067 100 <- Minus
2L 19119156..19119241 336..421 100 <- Minus
2L 19119319..19119474 180..335 100 <- Minus

LP11638.pep Sequence

Translation from 236 to 1768

> LP11638.pep
MSHIPISNTIPTKQTDGNGKANISPDKLDPKVSIDMEAPEFKDFAKTMVD
FIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIM
PGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELE
VVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLK
EVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR
MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNL
WIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWL
KDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRL
YGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNE
RNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVS
AAADEMEQEQ*

LP11638.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15210-PA 510 GF15210-PA 1..510 1..510 2569 93.9 Plus
Dana\GF12784-PA 876 GF12784-PA 1..476 36..509 1426 52.5 Plus
Dana\GF14702-PA 508 GF14702-PA 1..478 36..510 1388 53.3 Plus
Dana\GF13800-PA 637 GF13800-PA 1..479 36..510 1384 52.2 Plus
Dana\GF13801-PA 600 GF13801-PA 1..472 36..506 1189 47 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21650-PA 510 GG21650-PA 1..510 1..510 2696 97.8 Plus
Dere\GG24151-PA 847 GG24151-PA 1..476 36..509 1432 52.7 Plus
Dere\GG10812-PA 637 GG10812-PA 1..479 36..510 1369 51.8 Plus
Dere\amd-PA 510 GG21159-PA 1..478 36..510 1242 48.1 Plus
Dere\GG10813-PA 587 GG10813-PA 1..472 36..506 1183 46.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13483-PA 516 GH13483-PA 1..511 1..510 2394 86.5 Plus
Dgri\GH21773-PA 816 GH21773-PA 1..477 36..506 1415 53.7 Plus
Dgri\GH20147-PA 638 GH20147-PA 1..479 36..510 1370 52 Plus
Dgri\GH13435-PA 615 GH13435-PA 109..575 36..499 1302 51 Plus
Dgri\GH20148-PA 588 GH20148-PA 1..472 36..506 1177 46.7 Plus
Dgri\GH13435-PA 615 GH13435-PA 1..105 36..140 277 41.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Ddc-PC 510 CG10697-PC 1..510 1..510 2727 100 Plus
Ddc-PD 475 CG10697-PD 1..475 36..510 2544 100 Plus
Ddc-PB 475 CG10697-PB 1..475 36..510 2544 100 Plus
Hdc-PD 847 CG3454-PD 1..476 36..509 1390 52.5 Plus
Hdc-PC 619 CG3454-PC 1..476 36..509 1390 52.5 Plus
Hdc-PB 847 CG3454-PB 1..476 36..509 1390 52.5 Plus
Hdc-PA 847 CG3454-PA 1..476 36..509 1390 52.5 Plus
Tdc2-PA 637 CG30446-PA 1..479 36..510 1342 51.8 Plus
amd-PA 510 CG10501-PA 1..478 36..510 1334 52.1 Plus
amd-PB 510 CG10501-PB 1..478 36..510 1240 48.1 Plus
Tdc1-PA 587 CG30445-PA 1..472 36..506 1137 46.4 Plus
b-PC 514 CG7811-PC 9..514 16..506 331 25.3 Plus
b-PB 575 CG7811-PB 70..575 16..506 331 25.3 Plus
b-PA 575 CG7811-PA 70..575 16..506 331 25.3 Plus
Gad1-PD 510 CG14994-PD 31..394 39..407 302 27.3 Plus
Gad1-PC 510 CG14994-PC 31..394 39..407 302 27.3 Plus
Gad1-PA 510 CG14994-PA 31..394 39..407 302 27.3 Plus
Gad1-PB 510 CG14994-PB 31..394 39..407 302 27.3 Plus
CG5618-PA 510 CG5618-PA 47..424 61..443 237 24.9 Plus
CG5618-PE 346 CG5618-PE 26..260 218..443 222 28.9 Plus
CG5618-PD 346 CG5618-PD 26..260 218..443 222 28.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17235-PA 516 GI17235-PA 1..511 1..510 2345 84.9 Plus
Dmoj\GI19320-PA 817 GI19320-PA 1..477 36..506 1406 53 Plus
Dmoj\GI20238-PA 659 GI20238-PA 1..479 36..510 1371 52 Plus
Dmoj\GI13977-PA 507 GI13977-PA 1..478 36..510 1347 51.5 Plus
Dmoj\GI20239-PA 583 GI20239-PA 1..472 36..506 1184 46.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21129-PA 515 GL21129-PA 1..504 1..499 2403 88.5 Plus
Dper\GL11582-PA 843 GL11582-PA 1..478 36..509 1410 53.3 Plus
Dper\GL10988-PA 635 GL10988-PA 1..479 36..510 1374 52.2 Plus
Dper\GL21186-PA 436 GL21186-PA 1..436 36..468 1259 53 Plus
Dper\GL10989-PA 593 GL10989-PA 1..476 36..510 1174 45.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Ddc-PA 515 GA10503-PA 1..504 1..499 2403 88.5 Plus
Dpse\GA17460-PA 843 GA17460-PA 1..478 36..509 1409 53.3 Plus
Dpse\GA15851-PA 635 GA15851-PA 1..479 36..510 1370 52 Plus
Dpse\amd-PA 510 GA10357-PA 1..467 36..499 1263 49.3 Plus
Dpse\GA15850-PA 593 GA15850-PA 1..476 36..510 1174 45.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17029-PA 510 GM17029-PA 1..510 1..510 2722 98.2 Plus
Dsec\GM21194-PA 847 GM21194-PA 1..476 36..509 1432 52.7 Plus
Dsec\GM20861-PA 638 GM20861-PA 1..479 36..510 1364 51.6 Plus
Dsec\GM17326-PA 510 GM17326-PA 1..478 36..510 1243 48.1 Plus
Dsec\GM20862-PA 587 GM20862-PA 1..476 36..510 1180 46 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Ddc-PA 510 GD21778-PA 1..510 1..510 2748 99.6 Plus
Dsim\GD10721-PA 847 GD10721-PA 1..476 36..509 1435 52.7 Plus
Dsim\amd-PA 510 GD24184-PA 1..478 36..510 1244 47.9 Plus
Dsim\GD10312-PA 416 GD10312-PA 1..405 36..437 1192 53.1 Plus
Dsim\GD10313-PA 587 GD10313-PA 1..476 36..510 1180 46 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ddc-PA 504 GJ17995-PA 4..496 14..507 2348 88.3 Plus
Dvir\GJ22198-PA 825 GJ22198-PA 1..476 36..509 1413 53.2 Plus
Dvir\GJ20190-PA 649 GJ20190-PA 1..479 36..510 1378 52.4 Plus
Dvir\amd-PA 507 GJ18241-PA 1..478 36..510 1351 51 Plus
Dvir\GJ20191-PA 582 GJ20191-PA 1..472 36..506 1187 47.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Ddc-PA 511 GK24237-PA 1..508 1..507 2477 90.4 Plus
Dwil\GK17782-PA 806 GK17782-PA 1..476 36..509 1438 53.2 Plus
Dwil\GK23145-PA 641 GK23145-PA 1..479 36..510 1377 52 Plus
Dwil\amd-PA 513 GK24791-PA 1..478 36..510 1285 49.2 Plus
Dwil\GK23146-PA 589 GK23146-PA 1..472 36..506 1185 46.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12670-PA 513 GE12670-PA 1..513 1..510 2696 97.3 Plus
Dyak\GE19346-PA 849 GE19346-PA 1..476 36..509 1433 52.7 Plus
Dyak\GE24598-PA 632 GE24598-PA 1..479 36..510 1371 51.8 Plus
Dyak\GE13232-PA 510 GE13232-PA 1..478 36..510 1244 48.3 Plus
Dyak\GE24609-PA 587 GE24609-PA 1..472 36..506 1186 46.6 Plus

LP11638.hyp Sequence

Translation from 236 to 1768

> LP11638.hyp
MSHIPISNTIPTKQTDGNGKANISPDKLDPKVSIDMEAPEFKDFAKTMVD
FIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIM
PGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELE
VVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLK
EVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR
MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNL
WIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWL
KDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRL
YGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNE
RNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVS
AAADEMEQEQ*

LP11638.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ddc-PC 510 CG10697-PC 1..510 1..510 2727 100 Plus
Ddc-PD 475 CG10697-PD 1..475 36..510 2544 100 Plus
Ddc-PB 475 CG10697-PB 1..475 36..510 2544 100 Plus
Hdc-PC 619 CG3454-PC 1..476 36..509 1390 52.5 Plus
Hdc-PD 847 CG3454-PD 1..476 36..509 1390 52.5 Plus