Clone LP11750 Report

Search the DGRC for LP11750

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:117
Well:50
Vector:pOT2
Associated Gene/TranscriptCG6041-RA
Protein status:LP11750.pep: gold
Preliminary Size:1799
Sequenced Size:1098

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6041 2002-01-01 Sim4 clustering to Release 2
CG6041 2002-05-18 Blastp of sequenced clone
CG6041 2003-01-01 Sim4 clustering to Release 3
CG6041 2008-04-29 Release 5.5 accounting
CG6041 2008-08-15 Release 5.9 accounting
CG6041 2008-12-18 5.12 accounting

Clone Sequence Records

LP11750.complete Sequence

1098 bp (1098 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119090

> LP11750.complete
TCGATAGTCAGTCACCTGTATCATTTCGAAATCCCATACTGCCAAGTTAC
TCAAGAGAGATGGCTAAAGTCTGGGCCATACTGGCCATAGCGCTATTTCT
AGGAGCACTGGCCTCCGGCGAAAGTCTTTCAAGCGAAACGGCTGGAAAGA
TAGAGCCGAAGATCGTGGGCGGCTATGATGCGTCCATAGAACAGGTATCG
TACCAGGTGTCCATTCGCCTCACCGCCAACGACAAGAAGAGCTATGGATC
TGGTCACCTATGCGGTGGGGTGGTCATTTCCCAACGTTTGGTGGCCACCG
CCGCCCACTGCTGTTACATCACCGACAAGAAGAAGTACCGAACTGCTGGC
GAATTTGTCCTGGTCATGGGCAGCACCTACCTGACGAGCTCCACCGATCG
CACTTTGATGTACTACCTGCAGCAGCTAATTACGCACGAGAATTATAATC
CGGACGCGTTGACCAACGACATTGCCCTGATGTTCATCAATGGATATATA
CCCTGGAATTGGCCAACTGTAACGGCCCTGGCGTTGAACAGCCAACTTGT
GGCCACAAACACCGATTGCCTGATCTCCGGATGGGGTCTGCTCCAGCAGA
ACGGAACATTTAGTAGTAATACTCTGCAGGCCGCGACGGTGCCCATAGTG
TCGTATACAACCTGTCGCATTTCATACAATTCGATTCCGGTTTCCCAGGT
GTGCGCCGGCTATTTGAGTGGCGGAGTGGACGCCTGCCAGGGCGACTCCG
GCGGACCCATGAGCTGCAACGGAATGTTGGCCGGAATCGTTTCGTACGGC
GCTGGATGCGCAGCACCTGGTTATCCGGGTGTCTACACAAATGTGTCGTA
CTATTACGATTGGATTGTTCAAAAGAATAGCTCCCTCAACTATACCATCT
ATCATAATGGAGGAGTGCGGCAGGGATCGAGTTGGTCCTACCTGGGCATT
CTTCCACTCCTTGTGGCCTTCCTCTTGGAACTCTGAATCTAGTCATCGCA
TAGGTCCGCCAAATAGTCAAAGACTAGATTATAACCTAATTTAAACTGCA
ATTAATTTATTAAATTAACTTACAATTCTAAAAAAAAAAAAAAAAAAA

LP11750.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6041.a 1375 CG6041.a 261..1340 1..1080 5400 100 Plus
CG6041-RA 1127 CG6041-RA 13..1092 1..1080 5400 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5842033..5842515 597..1079 2370 99.4 Plus
chrX 22417052 chrX 5841658..5841937 320..599 1385 99.6 Plus
chrX 22417052 chrX 5841397..5841592 124..319 980 100 Plus
chrX 22417052 chrX 5840497..5840621 1..125 625 100 Plus
chrX 22417052 chrX 5843436..5843595 693..852 185 74.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:55:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5949726..5950209 597..1080 2420 100 Plus
X 23542271 X 5949351..5949630 320..599 1400 100 Plus
X 23542271 X 5949090..5949285 124..319 980 100 Plus
X 23542271 X 5948190..5948314 1..125 625 100 Plus
X 23542271 X 5951129..5951288 693..852 185 74.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5957824..5958307 597..1080 2420 100 Plus
X 23527363 X 5957449..5957728 320..599 1400 100 Plus
X 23527363 X 5957188..5957383 124..319 980 100 Plus
X 23527363 X 5956288..5956412 1..125 625 100 Plus
X 23527363 X 5959227..5959301 693..767 150 80 Plus
Blast to na_te.dros performed on 2019-03-16 12:23:36 has no hits.

LP11750.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:24:30 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5840497..5840619 1..123 100 -> Plus
chrX 5841397..5841592 124..319 100 -> Plus
chrX 5841658..5841937 320..599 99 -> Plus
chrX 5842036..5842515 600..1079 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:41:40 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
CG6041-RA 1..927 60..986 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:41:39 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
CG6041-RA 1..927 60..986 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:21:18 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
CG6041-RA 1..927 60..986 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:33:45 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
CG6041-RA 1..927 60..986 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:47 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
CG6041-RA 1..927 60..986 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:15:43 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
CG6041-RA 1..1079 1..1079 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:41:39 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
CG6041-RA 1..1079 1..1079 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:21:18 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
CG6041-RA 31..1109 1..1079 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:33:45 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
CG6041-RA 1..1079 1..1079 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:47 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
CG6041-RA 31..1109 1..1079 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:24:30 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
X 5949090..5949285 124..319 100 -> Plus
X 5948190..5948312 1..123 100 -> Plus
X 5949351..5949630 320..599 100 -> Plus
X 5949729..5950208 600..1079 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:24:30 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
X 5949090..5949285 124..319 100 -> Plus
X 5948190..5948312 1..123 100 -> Plus
X 5949351..5949630 320..599 100 -> Plus
X 5949729..5950208 600..1079 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:24:30 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
X 5949090..5949285 124..319 100 -> Plus
X 5948190..5948312 1..123 100 -> Plus
X 5949351..5949630 320..599 100 -> Plus
X 5949729..5950208 600..1079 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:21:18 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5842223..5842345 1..123 100 -> Plus
arm_X 5843123..5843318 124..319 100 -> Plus
arm_X 5843384..5843663 320..599 100 -> Plus
arm_X 5843762..5844241 600..1079 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:06:04 Download gff for LP11750.complete
Subject Subject Range Query Range Percent Splice Strand
X 5957449..5957728 320..599 100 -> Plus
X 5957827..5958306 600..1079 100   Plus
X 5956288..5956410 1..123 100 -> Plus
X 5957188..5957383 124..319 100 -> Plus

LP11750.hyp Sequence

Translation from 2 to 985

> LP11750.hyp
DSQSPVSFRNPILPSYSREMAKVWAILAIALFLGALASGESLSSETAGKI
EPKIVGGYDASIEQVSYQVSIRLTANDKKSYGSGHLCGGVVISQRLVATA
AHCCYITDKKKYRTAGEFVLVMGSTYLTSSTDRTLMYYLQQLITHENYNP
DALTNDIALMFINGYIPWNWPTVTALALNSQLVATNTDCLISGWGLLQQN
GTFSSNTLQAATVPIVSYTTCRISYNSIPVSQVCAGYLSGGVDACQGDSG
GPMSCNGMLAGIVSYGAGCAAPGYPGVYTNVSYYYDWIVQKNSSLNYTIY
HNGGVRQGSSWSYLGILPLLVAFLLEL*

LP11750.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6041-PA 308 CG6041-PA 1..308 20..327 1618 100 Plus
CG32755-PA 315 CG32755-PA 1..315 20..327 663 45 Plus
CG14780-PA 302 CG14780-PA 30..270 51..288 467 38.1 Plus
etaTry-PA 262 CG12386-PA 8..260 26..294 451 39.7 Plus
CG6048-PA 362 CG6048-PA 7..286 26..290 426 36.2 Plus

LP11750.pep Sequence

Translation from 59 to 985

> LP11750.pep
MAKVWAILAIALFLGALASGESLSSETAGKIEPKIVGGYDASIEQVSYQV
SIRLTANDKKSYGSGHLCGGVVISQRLVATAAHCCYITDKKKYRTAGEFV
LVMGSTYLTSSTDRTLMYYLQQLITHENYNPDALTNDIALMFINGYIPWN
WPTVTALALNSQLVATNTDCLISGWGLLQQNGTFSSNTLQAATVPIVSYT
TCRISYNSIPVSQVCAGYLSGGVDACQGDSGGPMSCNGMLAGIVSYGAGC
AAPGYPGVYTNVSYYYDWIVQKNSSLNYTIYHNGGVRQGSSWSYLGILPL
LVAFLLEL*

LP11750.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22083-PA 310 GF22083-PA 3..304 7..303 940 61.3 Plus
Dana\GF22084-PA 341 GF22084-PA 56..321 31..296 671 49.8 Plus
Dana\GF19285-PA 291 GF19285-PA 1..275 1..280 474 37.4 Plus
Dana\GF22085-PA 351 GF22085-PA 46..288 34..272 438 38.4 Plus
Dana\GF12405-PA 262 GF12405-PA 30..260 34..272 435 42.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18803-PA 306 GG18803-PA 1..305 1..307 1372 84.7 Plus
Dere\GG18804-PA 311 GG18804-PA 1..283 1..281 644 46.5 Plus
Dere\GG12861-PA 299 GG12861-PA 32..282 32..280 484 37.6 Plus
Dere\GG18805-PA 359 GG18805-PA 41..286 31..271 422 39 Plus
Dere\etaTry-PA 258 GG22663-PA 27..257 34..272 406 39.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24378-PA 258 GH24378-PA 2..254 45..306 694 49.6 Plus
Dgri\GH17346-PA 304 GH17346-PA 15..269 22..281 596 45 Plus
Dgri\GH24502-PA 283 GH24502-PA 12..281 31..305 514 38.8 Plus
Dgri\GH24379-PA 349 GH24379-PA 4..278 7..275 462 37.8 Plus
Dgri\GH22868-PA 268 GH22868-PA 32..264 34..272 401 38 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6041-PA 308 CG6041-PA 1..308 1..308 1618 100 Plus
CG32755-PA 315 CG32755-PA 1..315 1..308 663 45 Plus
CG14780-PA 302 CG14780-PA 30..270 32..269 467 38.1 Plus
etaTry-PA 262 CG12386-PA 8..260 7..275 451 39.7 Plus
CG6048-PA 362 CG6048-PA 7..286 7..271 426 36.2 Plus
zetaTry-PA 280 CG12387-PA 1..273 1..269 409 36.9 Plus
CG8299-PA 260 CG8299-PA 3..255 8..272 376 34.2 Plus
CG7829-PA 253 CG7829-PA 2..247 1..271 366 35.7 Plus
gammaTry-PA 253 CG30028-PA 6..250 10..270 349 33.2 Plus
CG30025-PA 253 CG30025-PA 6..250 10..270 349 33.2 Plus
deltaTry-PA 253 CG12351-PA 6..250 10..270 349 33.2 Plus
CG30031-PA 253 CG30031-PA 6..250 10..270 349 33.2 Plus
kappaTry-PC 263 CG12388-PC 8..253 17..269 348 32.8 Plus
lambdaTry-PA 272 CG12350-PA 31..258 30..271 348 33.7 Plus
Try29F-PD 267 CG9564-PD 19..261 4..269 347 35.4 Plus
Try29F-PC 267 CG9564-PC 19..261 4..269 347 35.4 Plus
CG31954-PA 277 CG31954-PA 46..271 30..269 347 34.7 Plus
betaTry-PB 253 CG18211-PB 6..250 10..270 343 31.7 Plus
betaTry-PA 253 CG18211-PA 6..250 10..270 343 31.7 Plus
alphaTry-PA 256 CG18444-PA 1..256 7..276 333 31.2 Plus
epsilonTry-PA 256 CG18681-PA 5..249 9..269 326 30.9 Plus
CG17571-PB 258 CG17571-PB 30..258 34..276 325 34.7 Plus
CG17571-PA 258 CG17571-PA 30..258 34..276 325 34.7 Plus
CG34458-PA 257 CG34458-PA 29..253 32..271 322 34.3 Plus
CG17475-PB 288 CG17475-PB 36..267 21..269 321 34.7 Plus
CG17475-PA 288 CG17475-PA 36..267 21..269 321 34.7 Plus
CG13430-PB 267 CG13430-PB 8..261 8..271 316 31.6 Plus
CG13430-PA 267 CG13430-PA 8..261 8..271 316 31.6 Plus
CG11192-PB 279 CG11192-PB 7..259 4..269 315 32 Plus
CG5255-PA 273 CG5255-PA 29..249 34..269 314 33.3 Plus
CG4613-PC 374 CG4613-PC 157..373 63..280 314 39.2 Plus
CG4613-PB 374 CG4613-PB 157..373 63..280 314 39.2 Plus
CG9372-PA 408 CG9372-PA 201..403 68..270 314 36.2 Plus
CG3795-PB 305 CG3795-PB 26..285 15..276 311 29.4 Plus
CG3795-PA 305 CG3795-PA 26..285 15..276 311 29.4 Plus
CG6865-PB 285 CG6865-PB 1..277 1..269 309 31 Plus
CG16749-PA 265 CG16749-PA 7..257 8..269 308 33.9 Plus
Ser8-PA 260 CG4812-PA 3..260 8..276 306 32.6 Plus
teq-PD 1450 CG4821-PD 1192..1447 21..276 305 32.1 Plus
teq-PF 2379 CG4821-PF 2121..2376 21..276 305 32.1 Plus
CG3355-PA 314 CG3355-PA 104..307 68..275 304 34.6 Plus
Sb-PB 787 CG4316-PB 536..784 27..271 304 33.2 Plus
Sb-PA 787 CG4316-PA 536..784 27..271 304 33.2 Plus
CG32269-PB 332 CG32269-PB 88..324 14..268 301 31.4 Plus
CG32269-PA 332 CG32269-PA 88..324 14..268 301 31.4 Plus
CG32270-PA 259 CG32270-PA 17..251 21..269 300 33.7 Plus
CG10472-PA 290 CG10472-PA 8..287 7..277 297 31.7 Plus
CG4386-PA 372 CG4386-PA 123..354 31..269 296 31.6 Plus
CG11037-PA 292 CG11037-PA 59..288 32..276 292 29.4 Plus
CG12951-PA 265 CG12951-PA 15..257 23..269 291 32.2 Plus
CG32271-PA 248 CG32271-PA 1..235 1..262 289 32.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23884-PA 315 GI23884-PA 39..310 34..308 544 41.2 Plus
Dmoj\GI16045-PA 254 GI16045-PA 2..225 50..273 448 40.1 Plus
Dmoj\GI21246-PA 262 GI21246-PA 27..260 34..275 438 38.1 Plus
Dmoj\GI21247-PA 271 GI21247-PA 17..267 16..272 387 36.9 Plus
Dmoj\GI17775-PA 275 GI17775-PA 12..271 1..271 363 30.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14895-PA 316 GL14895-PA 3..301 1..300 924 59.9 Plus
Dper\GL14896-PA 335 GL14896-PA 30..302 10..281 642 46.9 Plus
Dper\GL14259-PA 285 GL14259-PA 11..272 8..273 456 36.4 Plus
Dper\GL14897-PA 357 GL14897-PA 7..288 3..272 443 38.3 Plus
Dper\GL17341-PA 248 GL17341-PA 23..248 30..275 401 38.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26485-PA 314 GA26485-PA 1..299 1..300 927 59.9 Plus
Dpse\GA26492-PA 335 GA26492-PA 30..302 10..281 640 47.3 Plus
Dpse\GA13240-PA 304 GA13240-PA 11..272 8..273 457 36.4 Plus
Dpse\GA19320-PA 361 GA19320-PA 7..288 3..272 445 38.3 Plus
Dpse\GA11598-PA 262 GA11598-PA 23..260 30..275 419 38.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12454-PA 212 GM12454-PA 81..212 177..308 630 89.4 Plus
Dsec\GM12455-PA 253 GM12455-PA 7..253 4..308 440 37.3 Plus
Dsec\GM20442-PA 426 GM20442-PA 191..424 34..275 417 40.4 Plus
Dsec\GM12456-PA 368 GM12456-PA 1..286 1..271 416 36.3 Plus
Dsec\GM19144-PA 300 GM19144-PA 16..276 13..275 412 34.3 Plus
Dsec\GM12454-PA 212 GM12454-PA 1..74 1..77 315 83.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16771-PA 391 GD16771-PA 1..298 1..301 1481 93.4 Plus
Dsim\GD25909-PA 262 GD25909-PA 18..260 21..275 420 38.8 Plus
Dsim\GD16772-PA 358 GD16772-PA 1..286 1..271 410 36 Plus
Dsim\GD25910-PA 280 GD25910-PA 1..273 1..269 395 37.2 Plus
Dsim\GD22751-PA 277 GD22751-PA 46..273 30..271 363 34.4 Plus
Dsim\GD16771-PA 391 GD16771-PA 297..391 219..308 253 55.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14754-PA 299 GJ14754-PA 3..297 8..305 686 47.5 Plus
Dvir\GJ23977-PA 277 GJ23977-PA 1..275 34..307 550 42.6 Plus
Dvir\GJ15557-PA 282 GJ15557-PA 15..260 32..277 498 41 Plus
Dvir\GJ14755-PA 355 GJ14755-PA 4..285 3..277 462 37.4 Plus
Dvir\GJ20851-PA 269 GJ20851-PA 19..267 22..275 417 34.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20131-PA 305 GK20131-PA 5..303 5..305 988 62.7 Plus
Dwil\GK20132-PA 300 GK20132-PA 19..266 31..281 648 50.2 Plus
Dwil\GK16086-PA 312 GK16086-PA 38..291 26..275 468 38 Plus
Dwil\GK20133-PA 347 GK20133-PA 37..277 34..271 465 42.4 Plus
Dwil\GK20129-PA 299 GK20129-PA 32..277 46..284 460 42.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17565-PA 311 GE17565-PA 1..310 1..307 1467 90.3 Plus
Dyak\GE17566-PA 322 GE17566-PA 34..286 30..283 656 50 Plus
Dyak\GE16691-PA 299 GE16691-PA 32..277 32..275 480 38 Plus
Dyak\GE13537-PA 262 GE13537-PA 1..260 1..275 415 38.5 Plus
Dyak\GE13538-PA 280 GE13538-PA 1..273 1..269 407 38.3 Plus