Clone LP11854 Report

Search the DGRC for LP11854

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:118
Well:54
Vector:pOT2
Associated Gene/TranscriptCG10874-RC
Protein status:LP11854.pep: gold
Sequenced Size:1284

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10874-RB 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

LP11854.complete Sequence

1284 bp assembled on 2010-12-06

GenBank Submission: BT125811.1

> LP11854.complete
TGCGATAGGCCCCGATAGTTTCGCCTCCAAATAAAAACAAAGAAAATTCG
GTTTTCTTGACCGAATTTAGCGTAATCTAACACGGAAAATCAGCCAAATG
GAGCCCAACGATGAGGTGGTGGAGCGACAGAAGCTGGTGAACGACGTGGA
AACGGAGGAGGAAGCCCAAAGCGCACCGAAATCGGCCACACCCGCCTCGC
CCGCCGTTCCGAATATCAAAATCAAAGGCATATCCAGCGGCGAGACCACT
CGCAGCAGAAACTCGGCCTCCTGCTCCATCGAGAGGACGATATCCGAAAA
GGAGAAGGACAAGAGCCAGGGCCAGGGTCAAGCGGCCACCAAGGTGACCT
ATGTGAATGAGCGCCGGCCACGCCCGCAGGCGCACGGCGGCAGTGGCGGG
GGTGCCGGCGACGAAAGATTCGAGTTCAAGACCCGGCCGCGCAAACTCCT
GAAAGTTCCCGATGTTAAGCACATGGAAAGAGCTCTCCTCGGACTGCTGG
ACGACTTTCACTCCGGCAAGCTGAGGGCATTCGCAGGCTCCGGCTGCACA
ATGGACCAGATGACCAAGATTCGCGAGCAGCAGGAGAGCCTGGCCAAATT
GCATTTCGAACTGGCTGCCGCCGAGGAGGATTCGCTGGAGCACGGCAACG
AGTTCAACACCAACAAGGCGCAGGAGAACATGCTGCAGCTGATGCAGCGC
CTGGAACAGCTATCCATCTCCATCGAGCAGCTGCAGACGAGCCACACGGG
TCTCTGAGATTTGGCCCAGCCGCAGGCCTGGGATCAACGCCTGCTCTGGC
TCTGAGCACACCTATGGGGAAACGAGGAATGCCAAAGTGGAGCTGGATTG
GGATTTCACACAAGACTAGCGACTTTTCGACGGTGCGGACAGTTGGGATA
CTGTGTAAATATTTTAAGTTGTACGCTTAAGTGGGCGGATTCGATGGGCT
TCTCATGCTAAATAGTTTAGCGAACTCGCAGTGATTGTGAAACTAATTTA
GATTGTCTTCGCGTAGCCATAGCCATAGCGTTAAATTATTACTATAATAG
ACCAAGGGTGCCAAGGGGTGGTGCTAAAACGAATTATTTCATTGCAATTC
GATTCGACTCGATTTGATTGATGTGTGTGCTGCAGGTTATCAGGCTTCGA
TAATGATGCGAATCTGTTCCGCTTATTGTTTGTTATAGTTATTTGCAATA
TACATAGACACCTAATCATACACATGTACGAAACTCGGACCCATTAAAGT
TATCATTTTTATAAATAAAAAAAAAAAAAAAAAA

LP11854.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2189664..2190397 1266..533 3625 99.6 Minus
chr2L 23010047 chr2L 2191600..2191840 455..215 1205 100 Minus
chr2L 23010047 chr2L 2191897..2192110 214..1 1070 100 Minus
chr2L 23010047 chr2L 2190457..2190537 533..453 405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2189913..2190647 1267..533 3675 100 Minus
2L 23513712 2L 2191850..2192090 455..215 1205 100 Minus
2L 23513712 2L 2192147..2192360 214..1 1070 100 Minus
2L 23513712 2L 2190707..2190787 533..453 405 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2189913..2190647 1267..533 3675 100 Minus
2L 23513712 2L 2191850..2192090 455..215 1205 100 Minus
2L 23513712 2L 2192147..2192360 214..1 1070 100 Minus
2L 23513712 2L 2190707..2190787 533..453 405 100 Minus
Blast to na_te.dros performed on 2019-03-17 01:14:04 has no hits.

LP11854.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:14:52 Download gff for LP11854.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2191600..2191840 215..455 100 <- Minus
chr2L 2189664..2190396 534..1266 99 <- Minus
chr2L 2190457..2190534 456..533 100 <- Minus
chr2L 2191897..2192110 1..214 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2010-12-06 17:16:13 Download gff for LP11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RB 1..657 98..757 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:33:20 Download gff for LP11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RC 1..660 98..757 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:52:52 Download gff for LP11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RC 1..660 98..757 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 17:16:13 Download gff for LP11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RB 13..1273 1..1264 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:33:20 Download gff for LP11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RC 27..1292 1..1266 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:52:52 Download gff for LP11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RC 27..1292 1..1266 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:14:52 Download gff for LP11854.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2189914..2190646 534..1266 100 <- Minus
2L 2190707..2190784 456..533 100 <- Minus
2L 2191850..2192090 215..455 100 <- Minus
2L 2192147..2192360 1..214 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:14:52 Download gff for LP11854.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2189914..2190646 534..1266 100 <- Minus
2L 2190707..2190784 456..533 100 <- Minus
2L 2191850..2192090 215..455 100 <- Minus
2L 2192147..2192360 1..214 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:14:52 Download gff for LP11854.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2189914..2190646 534..1266 100 <- Minus
2L 2190707..2190784 456..533 100 <- Minus
2L 2191850..2192090 215..455 100 <- Minus
2L 2192147..2192360 1..214 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:33:20 Download gff for LP11854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2189914..2190646 534..1266 100 <- Minus
arm_2L 2190707..2190784 456..533 100 <- Minus
arm_2L 2191850..2192090 215..455 100 <- Minus
arm_2L 2192147..2192360 1..214 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:52:04 Download gff for LP11854.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2189914..2190646 534..1266 100 <- Minus
2L 2190707..2190784 456..533 100 <- Minus
2L 2191850..2192090 215..455 100 <- Minus
2L 2192147..2192360 1..214 100   Minus

LP11854.pep Sequence

Translation from 97 to 756

> LP11854.pep
MEPNDEVVERQKLVNDVETEEEAQSAPKSATPASPAVPNIKIKGISSGET
TRSRNSASCSIERTISEKEKDKSQGQGQAATKVTYVNERRPRPQAHGGSG
GGAGDERFEFKTRPRKLLKVPDVKHMERALLGLLDDFHSGKLRAFAGSGC
TMDQMTKIREQQESLAKLHFELAAAEEDSLEHGNEFNTNKAQENMLQLMQ
RLEQLSISIEQLQTSHTGL*

LP11854.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15303-PA 285 GF15303-PA 1..129 1..122 502 88.4 Plus
Dana\GF15303-PA 285 GF15303-PA 214..285 148..219 382 100 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24552-PA 326 GG24552-PA 1..124 1..122 614 96.8 Plus
Dere\GG24552-PA 326 GG24552-PA 195..326 88..219 526 79.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11474-PA 313 GH11474-PA 200..313 109..219 520 88.7 Plus
Dgri\GH11474-PA 313 GH11474-PA 1..120 1..119 378 71.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10874-PC 219 CG10874-PC 1..219 1..219 1109 100 Plus
CG10874-PB 218 CG10874-PB 1..218 1..219 1093 99.5 Plus
CG10874-PA 316 CG10874-PA 1..122 1..122 605 98.4 Plus
CG10874-PD 317 CG10874-PD 1..122 1..122 605 98.4 Plus
CG10874-PD 317 CG10874-PD 163..317 66..219 518 70.9 Plus
CG10874-PA 316 CG10874-PA 163..316 66..219 502 70.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16960-PA 305 GI16960-PA 193..305 110..219 503 86.8 Plus
Dmoj\GI16960-PA 305 GI16960-PA 1..116 1..119 395 71.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19419-PA 337 GL19419-PA 225..337 110..219 521 89.5 Plus
Dper\GL19419-PA 337 GL19419-PA 1..120 1..119 449 86.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10612-PA 337 GA10612-PA 225..337 110..219 521 89.5 Plus
Dpse\GA10612-PA 337 GA10612-PA 1..120 1..119 449 86.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18261-PA 316 GM18261-PA 1..119 1..119 627 100 Plus
Dsec\GM18261-PA 316 GM18261-PA 184..316 87..219 530 78.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22870-PA 316 GD22870-PA 1..119 1..119 627 100 Plus
Dsim\GD22870-PA 316 GD22870-PA 184..316 87..219 526 78.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17216-PA 303 GJ17216-PA 191..303 110..219 509 87.7 Plus
Dvir\GJ17216-PA 303 GJ17216-PA 1..115 1..119 412 74.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15138-PA 328 GK15138-PA 216..328 110..219 508 86.8 Plus
Dwil\GK15138-PA 328 GK15138-PA 1..127 1..119 452 84.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15219-PA 319 GE15219-PA 1..124 1..122 610 96 Plus
Dyak\GE15219-PA 319 GE15219-PA 188..319 88..219 527 79.4 Plus

LP11854.hyp Sequence

Translation from 97 to 756

> LP11854.hyp
MEPNDEVVERQKLVNDVETEEEAQSAPKSATPASPAVPNIKIKGISSGET
TRSRNSASCSIERTISEKEKDKSQGQGQAATKVTYVNERRPRPQAHGGSG
GGAGDERFEFKTRPRKLLKVPDVKHMERALLGLLDDFHSGKLRAFAGSGC
TMDQMTKIREQQESLAKLHFELAAAEEDSLEHGNEFNTNKAQENMLQLMQ
RLEQLSISIEQLQTSHTGL*

LP11854.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10874-PC 219 CG10874-PC 1..219 1..219 1109 100 Plus
CG10874-PB 218 CG10874-PB 1..218 1..219 1093 99.5 Plus
CG10874-PA 316 CG10874-PA 1..122 1..122 605 98.4 Plus
CG10874-PD 317 CG10874-PD 1..122 1..122 605 98.4 Plus
CG10874-PD 317 CG10874-PD 163..317 66..219 518 70.9 Plus
CG10874-PA 316 CG10874-PA 163..316 66..219 502 70.3 Plus