Clone LP12231 Report

Search the DGRC for LP12231

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:122
Well:31
Vector:pOT2
Associated Gene/TranscriptCG33128-RA
Protein status:LP12231.pep: gold
Preliminary Size:1474
Sequenced Size:1384

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10872 2001-01-01 Release 2 assignment
CG33128 2001-11-02 Blastp of sequenced clone
CG33128 2003-01-01 Sim4 clustering to Release 3
CG33128 2008-04-29 Release 5.5 accounting
CG33128 2008-08-15 Release 5.9 accounting
CG33128 2008-12-18 5.12 accounting

Clone Sequence Records

LP12231.complete Sequence

1384 bp (1384 high quality bases) assembled on 2001-11-02

GenBank Submission: AY069757

> LP12231.complete
AGAGGGCAGCAGAATATCTTTCGTTAGAAAAGCTCAGAGTACTCATTAAA
TCATAATGCTGAAGTGGCTGGTCCTGTTGACCATCTTGGCGTTGGTCAGT
GCTGAGATCCACCGCATCAAGATCCACAAGAACCAGGATCACAAGAACAC
CCGGCAGCATCGCAAGCAGGCTATCCAGGCTCTGAAGCTGAAGTACCACC
AACAGGACGTAGTCATCATTTACGACGATGGAGTACCGATTTACATGCAG
CCCGACTACGGATACGATTATCCCAGCCAGACCTCGGTTGACTACACATC
CGAGGAGCTGGGCAACTCGATGAACATGTACTACTACGGCCTGATTGGCA
TTGGCACCCCGGAGCAGTACTTCAAGGTGGTCTTTGACACGGGTTCGGCC
AACCTGTGGGTGCCATCTGCCCAGTGCCTGGCCACGGATGTGGCCTGCCA
GCAGCACAACCAGTATAACTCCAGTGCTTCCTCCACCTTCGTGTCCAGCG
GCCAAAACTTCTCCATCCAGTACGGAACCGGCAGTGTCTCCGGCTATCTG
GCCATAGATACGGTGACCATCAACGGCCTGGCCATCGCGAACCAGACCTT
CGGAGAGGCGGTTTCCCAGCCGGGAGCCAGCTTCACCGACGTGGCGTTCG
ATGGCATCCTGGGCATGGGTTACCAGCAAATTGCCGAGGACAACGTAGTG
CCGCCGTTCTACAATCTCTACGAGGAAGGTCTTATCGACGAGCCAGTCTT
TGGTTTCTACCTGGCTCGGAATGGCTCTGCCGTGGATGGTGGCCAACTGA
CCCTGGGTGGAACCGACCAGAACCTCATCGCCGGTGAAATGACCTACACA
CCCGTCACTCAGCAGGGCTACTGGCAGTTCGCTGTGAACAACATCACCTG
GAATGGAACCGTGATCTCCAGCGGATGCCAGGCAATCGCCGATACTGGAA
CCTCCCTGATCGCCGCTCCTTCGGCAGCCTACATTCAGCTGAACAACCTG
ATTGGAGGCGTTCCCATCCAGGGTGATTACTACGTGCCCTGCTCCACTGT
TTCCTCCCTGCCCGTTCTGACCATCAACATCGGTGGCACCAACTTCTACC
TGCCCCCCTCGGTTTACATCCAAACCTACACCGAGGGCAACTACACCACC
TGCATGTCCACCTTCACCGATATCGGAACGGGCTTCTGGATCCTGGGCGA
CGTTTTCCTGGGTCAATACTACTCCGAATTCGATTTTGGTCAGAACCGTG
TGGGTTTCGCCACTCTGGCTTAGAGCTTTAACGAACGAACAAACGACATG
CTTTCTAGGTTAACTCTGCTTATAAAAATACAAAAAAAAAAATAAATGAT
ATACAATTGAATAACTAAAAAAAAAAAAAAAAAA

LP12231.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG33128-RA 1367 CG33128-RA 2..1367 1..1366 6830 100 Plus
Bace-RA 1197 Bace-RA 358..503 455..600 205 76 Plus
Bace-RA 1197 Bace-RA 948..1014 1054..1120 170 83.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1494016..1495381 1..1366 6830 100 Plus
chr2L 23010047 chr2L 8494718..8494863 600..455 205 76 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:55:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1494091..1495458 1..1368 6840 100 Plus
2L 23513712 2L 8495802..8495947 600..455 205 76 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1494091..1495458 1..1368 6840 100 Plus
2L 23513712 2L 8495802..8495947 600..455 205 76 Minus
2L 23513712 2L 8495291..8495357 1120..1054 170 83.5 Minus
Blast to na_te.dros performed on 2019-03-16 06:44:43 has no hits.

LP12231.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:45:50 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1494016..1495381 1..1366 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:41:57 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 1..1218 56..1273 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:35:01 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 1..1218 56..1273 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:19:45 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 1..1218 56..1273 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:02:34 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 1..1218 56..1273 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:23:01 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 1..1218 56..1273 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:14:48 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 2..1367 1..1366 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:35:01 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 2..1367 1..1366 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:45 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 22..1387 1..1366 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:02:35 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 2..1367 1..1366 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:23:01 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
CG33128-RA 22..1387 1..1366 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:45:50 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1494091..1495456 1..1366 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:45:50 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1494091..1495456 1..1366 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:45:50 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1494091..1495456 1..1366 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:45 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1494091..1495456 1..1366 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:39:38 Download gff for LP12231.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1494091..1495456 1..1366 100   Plus

LP12231.pep Sequence

Translation from 55 to 1272

> LP12231.pep
MLKWLVLLTILALVSAEIHRIKIHKNQDHKNTRQHRKQAIQALKLKYHQQ
DVVIIYDDGVPIYMQPDYGYDYPSQTSVDYTSEELGNSMNMYYYGLIGIG
TPEQYFKVVFDTGSANLWVPSAQCLATDVACQQHNQYNSSASSTFVSSGQ
NFSIQYGTGSVSGYLAIDTVTINGLAIANQTFGEAVSQPGASFTDVAFDG
ILGMGYQQIAEDNVVPPFYNLYEEGLIDEPVFGFYLARNGSAVDGGQLTL
GGTDQNLIAGEMTYTPVTQQGYWQFAVNNITWNGTVISSGCQAIADTGTS
LIAAPSAAYIQLNNLIGGVPIQGDYYVPCSTVSSLPVLTINIGGTNFYLP
PSVYIQTYTEGNYTTCMSTFTDIGTGFWILGDVFLGQYYSEFDFGQNRVG
FATLA*

LP12231.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15184-PA 403 GF15184-PA 1..403 1..405 1461 71.7 Plus
Dana\GF14369-PA 371 GF14369-PA 1..371 1..405 1045 52 Plus
Dana\GF19728-PA 390 GF19728-PA 8..389 5..405 915 45.9 Plus
Dana\GF11236-PA 388 GF11236-PA 59..385 83..402 838 49.2 Plus
Dana\GF19727-PA 449 GF19727-PA 1..380 1..404 816 43.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24793-PA 404 GG24793-PA 1..404 1..405 1973 92.3 Plus
Dere\GG24067-PA 372 GG24067-PA 18..372 17..405 1013 51.7 Plus
Dere\GG23678-PA 392 GG23678-PA 17..390 15..405 999 49.6 Plus
Dere\GG22202-PA 395 GG22202-PA 70..395 82..405 857 50.6 Plus
Dere\GG10707-PA 390 GG10707-PA 27..387 20..402 851 44.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11416-PA 400 GH11416-PA 16..397 15..402 1164 58.5 Plus
Dgri\GH24623-PA 374 GH24623-PA 1..374 1..405 1065 53.1 Plus
Dgri\GH24344-PA 373 GH24344-PA 1..373 1..405 997 50.5 Plus
Dgri\GH24624-PA 446 GH24624-PA 31..387 17..404 858 45.5 Plus
Dgri\GH21578-PA 388 GH21578-PA 59..385 83..402 835 49.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG33128-PA 405 CG33128-PA 1..405 1..405 2140 100 Plus
Bace-PB 372 CG13095-PB 7..372 6..405 1034 52 Plus
Bace-PA 372 CG13095-PA 7..372 6..405 1034 52 Plus
CG17134-PA 391 CG17134-PA 1..389 1..405 1005 49.3 Plus
CG5863-PA 395 CG5863-PA 70..395 82..405 850 50.9 Plus
cathD-PC 392 CG1548-PC 63..389 83..402 837 50.2 Plus
cathD-PB 392 CG1548-PB 63..389 83..402 837 50.2 Plus
cathD-PA 392 CG1548-PA 63..389 83..402 837 50.2 Plus
CG6508-PA 423 CG6508-PA 62..387 81..404 816 47.4 Plus
Pgcl-PA 407 CG13374-PA 50..377 63..402 761 47.5 Plus
CG10104-PA 404 CG10104-PA 74..400 82..402 726 43.6 Plus
CG31926-PB 410 CG31926-PB 11..406 1..402 644 35.3 Plus
CG31926-PA 410 CG31926-PA 11..406 1..402 644 35.3 Plus
CG17283-PA 465 CG17283-PA 129..459 68..402 626 39.8 Plus
CG31928-PB 418 CG31928-PB 13..415 5..402 578 36.8 Plus
CG31928-PA 418 CG31928-PA 13..415 5..402 578 36.8 Plus
CG5860-PA 370 CG5860-PA 61..367 90..402 575 38 Plus
CG31661-PA 393 CG31661-PA 77..390 82..402 521 37.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14567-PA 402 GI14567-PA 13..402 10..405 1340 65.2 Plus
Dmoj\GI11124-PA 373 GI11124-PA 1..373 1..405 1057 51.2 Plus
Dmoj\GI11125-PA 371 GI11125-PA 1..371 1..405 1042 51.5 Plus
Dmoj\GI11126-PA 421 GI11126-PA 18..385 16..405 850 42.6 Plus
Dmoj\GI19550-PA 387 GI19550-PA 56..384 81..402 800 50.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15694-PA 401 GL15694-PA 1..400 1..405 1564 71.4 Plus
Dper\GL25647-PA 373 GL25647-PA 2..373 1..405 1025 50.7 Plus
Dper\GL26637-PA 387 GL26637-PA 1..385 1..405 994 47.2 Plus
Dper\GL23572-PA 393 GL23572-PA 1..393 1..405 876 44.1 Plus
Dper\GL11239-PA 388 GL11239-PA 59..385 83..402 837 49.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17303-PA 401 GA17303-PA 1..400 1..405 1577 71.7 Plus
Dpse\GA22213-PA 373 GA22213-PA 2..373 1..405 1030 51 Plus
Dpse\GA25369-PA 373 GA25369-PA 2..373 1..405 1025 50.7 Plus
Dpse\GA14340-PA 387 GA14340-PA 1..385 1..405 1003 47.4 Plus
Dpse\GA19187-PA 393 GA19187-PA 4..393 2..405 882 44.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16820-PA 405 GM16820-PA 1..405 1..405 2079 97.3 Plus
Dsec\GM12869-PA 372 GM12869-PA 16..372 15..405 1022 51.9 Plus
Dsec\GM18746-PA 392 GM18746-PA 18..390 16..405 976 49.7 Plus
Dsec\GM15229-PA 395 GM15229-PA 70..395 82..405 858 50.6 Plus
Dsec\GM20753-PA 392 GM20753-PA 1..389 2..402 848 42.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23099-PA 405 GD23099-PA 1..405 1..405 2076 97 Plus
Dsim\GD23736-PA 564 GD23736-PA 261..562 106..405 893 55.6 Plus
Dsim\GD19155-PA 395 GD19155-PA 70..395 82..405 855 50.6 Plus
Dsim\GD10217-PA 324 GD10217-PA 1..321 89..402 825 49.8 Plus
Dsim\GD23735-PA 404 GD23735-PA 43..368 81..404 798 46.5 Plus
Dsim\GD23736-PA 564 GD23736-PA 17..278 15..308 673 45.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17077-PA 404 GJ17077-PA 16..404 15..405 1311 66.2 Plus
Dvir\GJ15983-PA 372 GJ15983-PA 1..372 1..405 1069 52.2 Plus
Dvir\GJ15982-PA 374 GJ15982-PA 1..374 1..405 1037 50.5 Plus
Dvir\GJ15984-PA 423 GJ15984-PA 23..386 17..404 864 45.9 Plus
Dvir\GJ21122-PA 391 GJ21122-PA 5..388 1..402 802 43.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19045-PA 411 GK19045-PA 1..411 1..405 1503 68.9 Plus
Dwil\GK24836-PA 372 GK24836-PA 1..372 1..405 1065 51.7 Plus
Dwil\GK21682-PA 389 GK21682-PA 1..386 1..402 858 44.3 Plus
Dwil\GK11645-PA 388 GK11645-PA 7..388 6..405 848 43 Plus
Dwil\GK25659-PA 406 GK25659-PA 14..392 5..405 787 43.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17593-PA 404 GE17593-PA 1..404 1..405 2059 96.8 Plus
Dyak\GE10927-PA 372 GE10927-PA 16..372 15..405 1040 53.2 Plus
Dyak\GE18491-PA 392 GE18491-PA 17..390 15..405 978 49.6 Plus
Dyak\GE10129-PA 396 GE10129-PA 71..396 82..405 855 50.6 Plus
Dyak\GE23596-PA 392 GE23596-PA 26..389 17..402 851 44 Plus

LP12231.hyp Sequence

Translation from 55 to 1272

> LP12231.hyp
MLKWLVLLTILALVSAEIHRIKIHKNQDHKNTRQHRKQAIQALKLKYHQQ
DVVIIYDDGVPIYMQPDYGYDYPSQTSVDYTSEELGNSMNMYYYGLIGIG
TPEQYFKVVFDTGSANLWVPSAQCLATDVACQQHNQYNSSASSTFVSSGQ
NFSIQYGTGSVSGYLAIDTVTINGLAIANQTFGEAVSQPGASFTDVAFDG
ILGMGYQQIAEDNVVPPFYNLYEEGLIDEPVFGFYLARNGSAVDGGQLTL
GGTDQNLIAGEMTYTPVTQQGYWQFAVNNITWNGTVISSGCQAIADTGTS
LIAAPSAAYIQLNNLIGGVPIQGDYYVPCSTVSSLPVLTINIGGTNFYLP
PSVYIQTYTEGNYTTCMSTFTDIGTGFWILGDVFLGQYYSEFDFGQNRVG
FATLA*

LP12231.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG33128-PA 405 CG33128-PA 1..405 1..405 2140 100 Plus
Bace-PB 372 CG13095-PB 7..372 6..405 1034 52 Plus
Bace-PA 372 CG13095-PA 7..372 6..405 1034 52 Plus
CG17134-PA 391 CG17134-PA 1..389 1..405 1005 49.3 Plus
CG5863-PA 395 CG5863-PA 70..395 82..405 850 50.9 Plus