Clone LP12254 Report

Search the DGRC for LP12254

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:122
Well:54
Vector:pOT2
Associated Gene/TranscriptCG9941-RA
Protein status:LP12254.pep: gold
Sequenced Size:3197

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9941 2009-02-12 Manual selection by Sue Celniker

Clone Sequence Records

LP12254.complete Sequence

3197 bp assembled on 2009-08-17

GenBank Submission: BT099613.1

> LP12254.complete
AAAGGCAAATCAGAAATAATCAAGACATTGACCAACTTGTACTATTGCTA
GTTTTGTGGACACAGGATCCAACACTTGAAGGCGACCACAGCTTTCGCAC
ACTCACACACACACAGCGGCCATTTTCCGCCGAACAAGTGAAATGCCAAC
ATGCCATTGTATGTGTGGTGGTGACCAACTGAAATAGAATAATAAACTAA
ACCAAAGCGAAGAGAAAACGTAGGCCAAGAGCTATATTGGATCTGTGTCA
CAGTTTTCCATAGCACCAACCTATCAAATGGGCAACTTTGTGAGCAGACA
GAACGCGGCGGTGGAGGAGGCCGATCCGAGCACGAACAATGCCTACAAGT
ATCCACCGAGAATGGGTAACTTCTTTGGCACCCACTTCATCATGGGCGGC
GAGCGCTTCGACACGCCCCAACCGGAATCGTACTTGTTTGGCGAGAATGC
GGATCTCAATTTCCTGGGCAATCGACCCACAGCCTTTCCGTATCCCCCGC
CGCAGGCCAATGAACCGACGAAGACCCTGAAGAGTCTGGTCAACATTCGC
AAGGAGTCGGTGCGTTTCGTCAAGACGATGAACGACAAGAAGCTGGGCGG
TGTACTCGAGAAGCCCAAGATGAAGGAGATTGATCGGGACTTGGATCTGG
ACAAGGAGAAGTCCAACGTGACCATCGAGGATGTGGATGGAAATGTGCTC
TGCTCGATGGGTTTGGGTGGCGGTGATGCCGATATGACGCCCCCACCGCC
GCCCTGCTCTTACAACATCGAGTTTACCTTTGACTCGGACGCCAAGTGCG
CCATTACCATTTACTATTTCTGCTCGGAGGATGTCAGTCCCAGCGGCGTG
ACACTGGTGCCGCGCGAGGGTCTCACCTCGGAGACGTACCACTACGAGAA
GGGCATCAATCAGTGCTTCTCGCAGCCGAGCCATGTCTTCAATCCGCAGC
AGATGCCCGAGGATGAACTGGGCTATAGTCCCGGCCGTGAACAGTATCCC
GTGGCCATTCACTGTGTGGTGGAGGAGGGCAGCGACGAGTGTCGGCAATC
GCACACCACCATCTGTGTGATCGATCATCATCCGGAAAACGGCAGCTATG
TGCTGCGTGCATTGAAGCAAAAGATCTTTGTGGATGGCTTGTGCTACCTG
CTACAGGAGATCTATGGCATCGAGAACAAGGCCGTGAACAAAACGTCTCT
GGACGAGGAGATCGACGATCATGGCAGCGAGTGTGTTATTTGCATGAGTG
AGACGAGGGATACGCTCATCCTGCCCTGCCGCCATCTCTGTTTGTGCAAT
TCATGCGCGGATTCGCTGCGCTATCAGGCCAACAATTGTCCCATTTGTCG
CGCTCCGTTTCGGGCGTTGCTTCAGATCCGTGCTGTCCAGAAGGGAATTA
GCACGCATGTACTGCACCAGAACACGCCCACATCGGCGGCCGGGGAGCCG
GCGCCAGTGGATGTTCCGCCAGGCTATATTCCAGTCTCACTAATTGAGGC
ACTCAACGGACCGCCACAGTATGTGGCCAGGGCTAGGAACAGCGAACACG
ATGTCACGGACTCAGCTGCCACCGTGGCCGCTTCGACAATGACCAGTGCT
GACATCAAGGCCACATCGCCGATCAAGTCCAGCAGCCAGCGTCGACCGAA
GATCAAGAAAAACGCTTCGACGTGCACGTCGACCAGTGAGGTGGGCACCA
TTACCAATCAATCGGGCGGCGGCAATGGGTCATCCACACACTCTGTGGAG
ATTGAAAGCGATCCGAAGAAGTCCAGCACGGCCACCTGTACTTCGCCAAC
ATTGGGGGCATCCACTTCGCCGGAACCGAAACAGGACAAGCTGCAGATTG
TTAACGAACGAAAGTATCCCAGATCCACAGCCGGTTCCGGTGGCGATGGC
TCCGCGGGTACCGATGACGATGTGGACAGTGAGAACGAGAAGCTATCGCC
TCTGCTATCACCCGGCAGCAAGAGCAAGAACGTTTCTAGCAAATCGCTGA
AGCAGGTGGTGGCCTGCCTGGAAGCGGATGATGATGTCGATAATAAGAGC
AGCACTGGTGATGGGCCGACCGAGGAGTCCAGCCTAAAGAAGGGTTCGTC
GATAAAGCGCACCAAACCGAGACCAGAACTTAGCGGAAGCGGTGCACCCT
CACCCGCCGAGGCCACGGCCGAGGATTCGGATTACTACACGCCGGAGGAT
ACTCAGAATTCGATATTAAGCCCACTGTGCCCCACGGAGCGAGCCAAAAG
CGGTGATCCCCTTGGCGCCGGCAGTCTGGGCAATGGCGGTCTCAGCGTGG
GCAGGAGCGCAGGATCAGTGGGCGGACAAGCTGGAGTGGGACCCGTCGTT
GTGGGTTTCAGTAGTGCAGTTAAGAAGAACCTGCACAAAAAGTCCACATC
GGTGGGCAACATGGTGGGCTCCGGATCGGTGACAACGGTTGTGGACTTGA
AGTCCAACAACGTAAGCTCCCTGCCAGACATGTTGGACAGCCCAATCAGC
GGCAACTCGGCCTCGACGCGCAGCTCCAGTGATAGCTACTCCTCCAGTTC
GTCCACCAAGCAGCTGCTCAGCTCCAATCCGACCACTACGGCGGCCAATA
TTATCGTAGATGACAAGACAGCTCTGCAGAATGCCGTCAATGTTTAGAGC
CGGTCTCGGTTGAATTTCGCGGAAATTCGTTTTCTCGTTTTAGCTTTGCG
TTTATACTATTTATTCGGAGTTCACCTAGATTTAGTTAAATCAATGCTGC
TTCCCCGCTCGCAGGAACAAATATTTTGAGGATTATATTAATATTAATAT
TAATGGTAATGCTAATGATGATGATGATGATGATGATGATAATGATAATA
CGGATAAGGATGGAACGGAGGAGGAGCAAGGAATAAGGCTACCAGGACGC
AACACTTAACCAGTATACACAGTATATACATACATACAAACACTAACACC
ACAGACACGAAAAGACACACGTCCCACATGCATGTGTGTGTATGTAGTTT
AATCTAGTATAATGGCTTGGGTATATAACAAATAAAATAAATCCAATAAA
CAACGGCGCCTAGGGCGCTACATTCCACAGTATAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP12254.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9941-RA 3190 CG9941-RA 73..3157 1..3085 15425 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13611146..13612682 1537..1 7685 100 Minus
chrX 22417052 chrX 13610140..13611082 2477..1535 4715 100 Minus
chrX 22417052 chrX 13609469..13610078 3083..2474 3050 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:56:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13720417..13721953 1537..1 7685 100 Minus
X 23542271 X 13719411..13720353 2477..1535 4715 100 Minus
X 23542271 X 13718738..13719349 3085..2474 3060 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13728515..13730051 1537..1 7685 100 Minus
X 23527363 X 13727509..13728451 2477..1535 4715 100 Minus
X 23527363 X 13726836..13727447 3085..2474 3060 100 Minus
Blast to na_te.dros performed 2019-03-15 15:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 5868..5959 2996..2900 148 66 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 41..86 2782..2827 122 73.9 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7079..7124 2782..2827 122 73.9 Plus

LP12254.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:06:41 Download gff for LP12254.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13609469..13610074 2478..3083 100 <- Minus
chrX 13610140..13611080 1537..2477 100 <- Minus
chrX 13611147..13612682 1..1536 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:14:27 Download gff for LP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG9941-RA 1..2370 278..2647 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:59:21 Download gff for LP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG9941-RA 1..2370 278..2647 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:02:08 Download gff for LP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG9941-RA 1..2370 278..2647 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:26:37 Download gff for LP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG9941-RA 1..2370 278..2647 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-17 13:36:46 Download gff for LP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG9941-RA 73..3155 1..3083 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:59:21 Download gff for LP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG9941-RA 73..3155 1..3083 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:02:08 Download gff for LP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG9941-RA 25..3107 1..3083 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:26:37 Download gff for LP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG9941-RA 25..3107 1..3083 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:06:41 Download gff for LP12254.complete
Subject Subject Range Query Range Percent Splice Strand
X 13718740..13719345 2478..3083 100 <- Minus
X 13719411..13720351 1537..2477 100 <- Minus
X 13720418..13721953 1..1536 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:06:41 Download gff for LP12254.complete
Subject Subject Range Query Range Percent Splice Strand
X 13718740..13719345 2478..3083 100 <- Minus
X 13719411..13720351 1537..2477 100 <- Minus
X 13720418..13721953 1..1536 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:06:41 Download gff for LP12254.complete
Subject Subject Range Query Range Percent Splice Strand
X 13718740..13719345 2478..3083 100 <- Minus
X 13719411..13720351 1537..2477 100 <- Minus
X 13720418..13721953 1..1536 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:02:08 Download gff for LP12254.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13612773..13613378 2478..3083 100 <- Minus
arm_X 13613444..13614384 1537..2477 100 <- Minus
arm_X 13614451..13615986 1..1536 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:51:06 Download gff for LP12254.complete
Subject Subject Range Query Range Percent Splice Strand
X 13726838..13727443 2478..3083 100 <- Minus
X 13727509..13728449 1537..2477 100 <- Minus
X 13728516..13730051 1..1536 100   Minus

LP12254.hyp Sequence

Translation from 277 to 2646

> LP12254.hyp
MGNFVSRQNAAVEEADPSTNNAYKYPPRMGNFFGTHFIMGGERFDTPQPE
SYLFGENADLNFLGNRPTAFPYPPPQANEPTKTLKSLVNIRKESVRFVKT
MNDKKLGGVLEKPKMKEIDRDLDLDKEKSNVTIEDVDGNVLCSMGLGGGD
ADMTPPPPPCSYNIEFTFDSDAKCAITIYYFCSEDVSPSGVTLVPREGLT
SETYHYEKGINQCFSQPSHVFNPQQMPEDELGYSPGREQYPVAIHCVVEE
GSDECRQSHTTICVIDHHPENGSYVLRALKQKIFVDGLCYLLQEIYGIEN
KAVNKTSLDEEIDDHGSECVICMSETRDTLILPCRHLCLCNSCADSLRYQ
ANNCPICRAPFRALLQIRAVQKGISTHVLHQNTPTSAAGEPAPVDVPPGY
IPVSLIEALNGPPQYVARARNSEHDVTDSAATVAASTMTSADIKATSPIK
SSSQRRPKIKKNASTCTSTSEVGTITNQSGGGNGSSTHSVEIESDPKKSS
TATCTSPTLGASTSPEPKQDKLQIVNERKYPRSTAGSGGDGSAGTDDDVD
SENEKLSPLLSPGSKSKNVSSKSLKQVVACLEADDDVDNKSSTGDGPTEE
SSLKKGSSIKRTKPRPELSGSGAPSPAEATAEDSDYYTPEDTQNSILSPL
CPTERAKSGDPLGAGSLGNGGLSVGRSAGSVGGQAGVGPVVVGFSSAVKK
NLHKKSTSVGNMVGSGSVTTVVDLKSNNVSSLPDMLDSPISGNSASTRSS
SDSYSSSSSTKQLLSSNPTTTAANIIVDDKTALQNAVNV*

LP12254.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9941-PA 789 CG9941-PA 1..789 1..789 4113 100 Plus
Muc68D-PB 1514 CG6004-PB 393..760 420..772 162 21.1 Plus

LP12254.pep Sequence

Translation from 277 to 2646

> LP12254.pep
MGNFVSRQNAAVEEADPSTNNAYKYPPRMGNFFGTHFIMGGERFDTPQPE
SYLFGENADLNFLGNRPTAFPYPPPQANEPTKTLKSLVNIRKESVRFVKT
MNDKKLGGVLEKPKMKEIDRDLDLDKEKSNVTIEDVDGNVLCSMGLGGGD
ADMTPPPPPCSYNIEFTFDSDAKCAITIYYFCSEDVSPSGVTLVPREGLT
SETYHYEKGINQCFSQPSHVFNPQQMPEDELGYSPGREQYPVAIHCVVEE
GSDECRQSHTTICVIDHHPENGSYVLRALKQKIFVDGLCYLLQEIYGIEN
KAVNKTSLDEEIDDHGSECVICMSETRDTLILPCRHLCLCNSCADSLRYQ
ANNCPICRAPFRALLQIRAVQKGISTHVLHQNTPTSAAGEPAPVDVPPGY
IPVSLIEALNGPPQYVARARNSEHDVTDSAATVAASTMTSADIKATSPIK
SSSQRRPKIKKNASTCTSTSEVGTITNQSGGGNGSSTHSVEIESDPKKSS
TATCTSPTLGASTSPEPKQDKLQIVNERKYPRSTAGSGGDGSAGTDDDVD
SENEKLSPLLSPGSKSKNVSSKSLKQVVACLEADDDVDNKSSTGDGPTEE
SSLKKGSSIKRTKPRPELSGSGAPSPAEATAEDSDYYTPEDTQNSILSPL
CPTERAKSGDPLGAGSLGNGGLSVGRSAGSVGGQAGVGPVVVGFSSAVKK
NLHKKSTSVGNMVGSGSVTTVVDLKSNNVSSLPDMLDSPISGNSASTRSS
SDSYSSSSSTKQLLSSNPTTTAANIIVDDKTALQNAVNV*

LP12254.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22349-PA 793 GF22349-PA 1..793 1..789 3169 85.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19492-PA 790 GG19492-PA 1..790 1..789 4107 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11938-PA 802 GH11938-PA 1..802 1..789 2723 70.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9941-PA 789 CG9941-PA 1..789 1..789 4113 100 Plus
Muc68D-PB 1514 CG6004-PB 393..760 420..772 162 21.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\moj152-PA 778 GI14142-PA 1..778 1..789 2537 66.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19851-PA 809 GL19851-PA 1..809 1..789 3062 79 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22141-PA 809 GA22141-PA 1..809 1..789 3125 79.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24519-PA 564 GD24519-PA 1..564 226..789 2890 98.4 Plus
Dsim\GD24520-PA 168 GD24520-PA 1..157 1..157 855 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19082-PA 782 GJ19082-PA 1..782 1..789 2539 67.4 Plus
Dvir\GJ19083-PA 266 GJ19083-PA 13..266 415..657 385 44.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25125-PA 782 GK25125-PA 1..782 1..789 2550 70.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16144-PA 791 GE16144-PA 1..791 1..789 4082 98 Plus