Clone LP12305 Report

Search the DGRC for LP12305

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:123
Well:5
Vector:pOT2
Associated Gene/TranscriptCG17119-RA
Protein status:LP12305.pep: gold
Preliminary Size:1417
Sequenced Size:1496

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17119 2002-01-01 Sim4 clustering to Release 2
CG17119 2002-05-18 Blastp of sequenced clone
CG17119 2003-01-01 Sim4 clustering to Release 3
CG17119 2008-04-29 Release 5.5 accounting
CG17119 2008-08-15 Release 5.9 accounting
CG17119 2008-12-18 5.12 accounting

Clone Sequence Records

LP12305.complete Sequence

1496 bp (1496 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119096

> LP12305.complete
CGCCATCGCAGCCATCATCATAGCATTCCATTCCACTTGTAGCCATCGGC
AGTCGCTCAATCGTCAGTTGGGACACATTATTTAACTTCATTCTTAACGG
CTTCATTGAAGAAGATGCCAGCAGGACTGGATGCTCATGCATGAATAAGT
TGAACGTTGAACGCAAGCAGAATGGATTTCAGCACACACCGCCTGACCAC
TTTGCTGCTCCTCCTCCTGGCCACAGTTGCCCTGGGAAATGCCCAAAGCA
GTCAGCTCACCGTCGATTCCCATGACATCACCGTTCTGCTGAACAGCAAC
GAGACTTTTCTGGTGTTCGCCAACGGATTGCTAGACAGCGACGTGGAAGT
TGCGCTGGGAACAGATTCGGAGGATCATTTGCTCCTCGATCCCGCAACGT
TTGTGTATCCAGCGGGCAGTACTCGAAATCAGTCGGTGGTGATAACTGGC
CTCAAAGCCGGCAACGTCAAAGTGGTCGCAGATAGCGATGATGCGAACAA
AGAGATTGTGAAGGATGTGTTCGTACGCGTGACTGTGGCCAAATCGAGAG
CTTTGATCTACACCTCCATCATCTTTGGCTGGGTTTACTTTGTGGCCTGG
TCGGTGTCCTTCTATCCGCAGATCTGGAGCAACTATCGCCGCAAGTCCGT
CGAGGGACTGAACTTTGATTTCCTGGCCCTCAATATCGTGGGCTTCACCC
TGTACAGCATGTTCAACTGCGGCCTCTATTTCATCGAGGATCTGCAGAAC
GAGTACGAGGTGCGATATCCGCTGGGAGTGAATCCTGTGATGCTCAACGA
CGTGGTCTTCTCACTGCATGCCATGTTCGCCACCTGCATTACGATCCTTC
AGTGCTTTTTCTATCAGAGAGCACAGCAAAGGGTGTCGTTCATTGCCTAC
GGAATATTGGCCATCTTCGCCGTGGTGGTCGTCGTGTCTGCCGGTTTGGC
CGGAGGATCCGTCATCCATTGGCTGGACTTTCTGTACTACTGCAGTTACG
TCAAGCTAACCATTACCATCATCAAGTACGTGCCGCAAGCTCTGATGAAC
TATCGCCGGAAGAGCACCTCCGGCTGGAGCATCGGCAACATTCTGCTGGA
TTTCACGGGAGGAACGCTGAGCATGCTGCAAATGATTCTGAATGCTCATA
ATTACGATGATTGGGTGTCGATTTTCGGTGATCCCACCAAATTCGGACTG
GGTCTGTTTTCCGTGCTCTTCGATGTGTTCTTCATGCTGCAGCACTATGT
GTTTTACAGGCATTCGAGGGAATCCTCGAGCTCTGACCTCACCACCGTGA
CCGATGTTCAAAATCGAACAAATGAGTCGCCGCCGCCGAGCGAAGTGACG
ACTGAGAAATATTAGAGCTGCATTATCATATGTCTGCTGTAGAGAAAGAC
TTTTGTGCCAGTAGCGCTTTATGTACATTTTTAGAATTGTAAATATATCC
GTATGCCGTAGCTGCCTAAGCTTTGTATAAAAAAAAAAAAAAAAAA

LP12305.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-RA 1531 CG17119-RA 27..1506 1..1480 7400 100 Plus
CG17119-RB 1605 CG17119-RB 27..1286 1..1260 6300 100 Plus
CG17119-RB 1605 CG17119-RB 1383..1605 1257..1479 1115 100 Plus
nc_18500.a 137 nc_18500.a 59..137 113..191 395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18878773..18879133 867..507 1805 100 Minus
chr3R 27901430 chr3R 18878298..18878589 1156..865 1460 100 Minus
chr3R 27901430 chr3R 18877820..18878041 1478..1257 1110 100 Minus
chr3R 27901430 chr3R 18879199..18879381 506..324 915 100 Minus
chr3R 27901430 chr3R 18879609..18879736 226..99 640 100 Minus
chr3R 27901430 chr3R 18879452..18879561 323..214 535 99.1 Minus
chr3R 27901430 chr3R 18878138..18878242 1260..1156 525 100 Minus
chr3R 27901430 chr3R 18880842..18880940 99..1 495 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:56:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23055363..23055723 867..507 1805 100 Minus
3R 32079331 3R 23054888..23055179 1156..865 1460 100 Minus
3R 32079331 3R 23054408..23054631 1480..1257 1120 100 Minus
3R 32079331 3R 23055789..23055971 506..324 915 100 Minus
3R 32079331 3R 23056199..23056326 226..99 640 100 Minus
3R 32079331 3R 23056042..23056151 323..214 535 99.1 Minus
3R 32079331 3R 23054728..23054832 1260..1156 525 100 Minus
3R 32079331 3R 23057432..23057530 99..1 495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22796194..22796554 867..507 1805 100 Minus
3R 31820162 3R 22795719..22796010 1156..865 1460 100 Minus
3R 31820162 3R 22795239..22795462 1480..1257 1120 100 Minus
3R 31820162 3R 22796620..22796802 506..324 915 100 Minus
3R 31820162 3R 22797030..22797157 226..99 640 100 Minus
3R 31820162 3R 22796873..22796982 323..214 535 99 Minus
3R 31820162 3R 22795559..22795663 1260..1156 525 100 Minus
3R 31820162 3R 22798263..22798361 99..1 495 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:59:19 has no hits.

LP12305.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:59:59 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18879452..18879548 227..323 100 <- Minus
chr3R 18879609..18879736 99..226 100 <- Minus
chr3R 18880843..18880940 1..98 100   Minus
chr3R 18877820..18878038 1260..1478 100 <- Minus
chr3R 18878139..18878241 1157..1259 100 <- Minus
chr3R 18878298..18878586 868..1156 100 <- Minus
chr3R 18878773..18879133 507..867 100 <- Minus
chr3R 18879199..18879381 324..506 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:42:06 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 1..1194 172..1365 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:41:30 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 1..1194 172..1365 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:41:34 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 1..1194 172..1365 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:33:37 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 1..1194 172..1365 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:28:13 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 1..1194 172..1365 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:15:33 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 17..1494 1..1478 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:41:30 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 17..1494 1..1478 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:41:34 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 18..1495 1..1478 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:33:37 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 17..1494 1..1478 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:28:13 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 18..1495 1..1478 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:59 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23056199..23056326 99..226 100 <- Minus
3R 23057433..23057530 1..98 100   Minus
3R 23054410..23054628 1260..1478 100 <- Minus
3R 23054729..23054831 1157..1259 100 <- Minus
3R 23054888..23055176 868..1156 100 <- Minus
3R 23055363..23055723 507..867 100 <- Minus
3R 23055789..23055971 324..506 100 <- Minus
3R 23056042..23056138 227..323 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:59 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23056199..23056326 99..226 100 <- Minus
3R 23057433..23057530 1..98 100   Minus
3R 23054410..23054628 1260..1478 100 <- Minus
3R 23054729..23054831 1157..1259 100 <- Minus
3R 23054888..23055176 868..1156 100 <- Minus
3R 23055363..23055723 507..867 100 <- Minus
3R 23055789..23055971 324..506 100 <- Minus
3R 23056042..23056138 227..323 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:59 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23056199..23056326 99..226 100 <- Minus
3R 23057433..23057530 1..98 100   Minus
3R 23054410..23054628 1260..1478 100 <- Minus
3R 23054729..23054831 1157..1259 100 <- Minus
3R 23054888..23055176 868..1156 100 <- Minus
3R 23055363..23055723 507..867 100 <- Minus
3R 23055789..23055971 324..506 100 <- Minus
3R 23056042..23056138 227..323 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:41:34 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18880132..18880350 1260..1478 100 <- Minus
arm_3R 18880451..18880553 1157..1259 100 <- Minus
arm_3R 18880610..18880898 868..1156 100 <- Minus
arm_3R 18881085..18881445 507..867 100 <- Minus
arm_3R 18881511..18881693 324..506 100 <- Minus
arm_3R 18881764..18881860 227..323 100 <- Minus
arm_3R 18881921..18882048 99..226 100 <- Minus
arm_3R 18883155..18883252 1..98 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:05:55 Download gff for LP12305.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22795241..22795459 1260..1478 100 <- Minus
3R 22795560..22795662 1157..1259 100 <- Minus
3R 22795719..22796007 868..1156 100 <- Minus
3R 22796194..22796554 507..867 100 <- Minus
3R 22796620..22796802 324..506 100 <- Minus
3R 22796873..22796969 227..323 100 <- Minus
3R 22797030..22797157 99..226 100 <- Minus
3R 22798264..22798361 1..98 100   Minus

LP12305.pep Sequence

Translation from 171 to 1364

> LP12305.pep
MDFSTHRLTTLLLLLLATVALGNAQSSQLTVDSHDITVLLNSNETFLVFA
NGLLDSDVEVALGTDSEDHLLLDPATFVYPAGSTRNQSVVITGLKAGNVK
VVADSDDANKEIVKDVFVRVTVAKSRALIYTSIIFGWVYFVAWSVSFYPQ
IWSNYRRKSVEGLNFDFLALNIVGFTLYSMFNCGLYFIEDLQNEYEVRYP
LGVNPVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAIFA
VVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTS
GWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLF
DVFFMLQHYVFYRHSRESSSSDLTTVTDVQNRTNESPPPSEVTTEKY*

LP12305.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18270-PA 392 GF18270-PA 13..387 18..391 1641 81.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12466-PA 393 GG12466-PA 1..393 1..397 1889 92.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18192-PA 914 GH18192-PA 606..914 55..363 1288 76.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-PC 397 CG17119-PC 1..397 1..397 2044 100 Plus
CG17119-PA 397 CG17119-PA 1..397 1..397 2044 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10761-PA 354 GI10761-PA 1..354 10..363 1366 70.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27354-PA 389 GL27354-PA 6..389 11..397 1431 74.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27047-PA 389 GA27047-PA 6..389 11..397 1435 75 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23597-PA 396 GM23597-PA 1..396 1..397 1948 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18410-PA 396 GD18410-PA 1..396 1..397 2022 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14362-PA 375 GJ14362-PA 2..369 19..387 1413 71.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13579-PA 361 GK13579-PA 1..361 1..363 1425 72.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23989-PA 388 GE23989-PA 10..388 17..397 1890 93.2 Plus

LP12305.hyp Sequence

Translation from 171 to 1364

> LP12305.hyp
MDFSTHRLTTLLLLLLATVALGNAQSSQLTVDSHDITVLLNSNETFLVFA
NGLLDSDVEVALGTDSEDHLLLDPATFVYPAGSTRNQSVVITGLKAGNVK
VVADSDDANKEIVKDVFVRVTVAKSRALIYTSIIFGWVYFVAWSVSFYPQ
IWSNYRRKSVEGLNFDFLALNIVGFTLYSMFNCGLYFIEDLQNEYEVRYP
LGVNPVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAIFA
VVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTS
GWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLF
DVFFMLQHYVFYRHSRESSSSDLTTVTDVQNRTNESPPPSEVTTEKY*

LP12305.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-PC 397 CG17119-PC 1..397 1..397 2044 100 Plus
CG17119-PA 397 CG17119-PA 1..397 1..397 2044 100 Plus