Clone LP12324 Report

Search the DGRC for LP12324

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:123
Well:24
Vector:pOT2
Associated Gene/Transcriptsvr-RE
Protein status:LP12324.pep: gold
Sequenced Size:2468

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4122 2003-01-01 Sim4 clustering to Release 3
CG4122 2004-07-14 Blastp of sequenced clone
svr 2008-04-29 Release 5.5 accounting
svr 2008-08-15 Release 5.9 accounting
svr 2008-12-18 5.12 accounting

Clone Sequence Records

LP12324.complete Sequence

2468 bp (2468 high quality bases) assembled on 2004-07-14

GenBank Submission: BT015253

> LP12324.complete
AAATAGTTCATTCATTCAGCATCCACTTTCTGTTGAAAGTGGCGCGCCTG
CGTTTTGTGTCTTAATCATCGCATTGCTGCCTGCCTACGTGTACAGAAAC
TGCGAGCGCTCCGGGAGAGTCCCCGAGAATCCCCAAAATGTTGTTTTTCT
GCCTAGCCTTGATCATCGGCTGCGCAGTCGGAGAATACAGCGAAGTCCGG
GTCATCCAGGAAGAGGACAACTTCCTGGAGAGTCCTCACTACCTAAAAAA
CGAGGAAATAGGAGATCTTTTCAGCCAGCTAGCCAAGGATTACCCCGACT
TGGCGCAGACCTATACAATAGGCAAATCCCTGGAGGATCGACCCATCTAC
GCCCTAGCCTTAAGTGCACCTACCGGGGAGTCCAAGAATGGAGATCTCCT
AAGGCCAATGGTTAAACTGGTGGCCAACATACAAGGCGATGAAGCCGTGG
GTCGTCAGATGGTTCTCTATATGGCCGAATACCTGGCCACCCACTACGAT
GGGGACCCGAAGGTCCAGGCGCTACTAAATCTCACCGAAATCCACTTCCT
GCCCACCTGTAACCCCGATGGATTCGCCAAAGCCAAGGAAGGCAACTGCG
AGTCGCTGCCCAACTATGTGGGTCGTGGCAATGCGGCCAACATCGATTTG
AATCGCGATTTCCCCGATCGCCTGGAGCAGAGCCATGTCCACCAGTTGCG
CGCCCAGTCTCGTCAGCCGGAAACAGCAGCCCTGGTAAATTGGATCGTTA
GCAAACCGTTTGTGCTCTCCGCCAATTTCCATGGCGGAGCTGTTGTGGCC
AGCTATCCCTATGACAACTCCTTGGCTCACAATGAGTGCTGCGAGGAGAG
TTTGACTCCGGATGATCGGGTCTTCAAGCAGCTGGCCCACACCTATTCTG
ACAACCATCCGATTATGAGAAAGGGCAACAATTGCAACGATAGCTTCTCG
GGAGGTATCACCAACGGAGCCCACTGGTATGAGTTGTCCGGTGGAATGCA
GGACTTTAACTATGCGTTTAGCAACTGTTTCGAGCTGACCATCGAGTTGT
CGTGCTGCAAGTATCCGGCAGCAAGCACTTTGCCCCAGGAATGGCAGCGG
AACAAGGCATCCCTGCTGCAGCTGCTGCGCCAGGCACATATCGGCATCAA
GGGCCTGGTGACCGATGCCAGTGGCTTTCCAATAGCCGATGCCAATGTCT
ACGTGGCTGGACTAGAGGAGAAACCCATGCGCACTTCCAAACGTGGCGAA
TACTGGAGGCTTTTGACCCCGGGACTCTATAGCGTGCACGCCTCCGCTTT
TGGTTACCAGACCAGTGCCCCGCAACAGGTCCGGGTGACCAACGATAACC
AGGAGGCCTTGCGCCTGGACTTTAAGCTTGCGCCCGTCGAGACGAACTTT
GATGGTATTAGCAGTTTTTACAGTCCCTATTATTTCTAGAGAGGGATGCA
ACGGAAATACCTATATATATGCGCATATATATTATATTGGGCAGTTCCAA
AATGCTATACATATATCCACATTTAGCGATGCATAGTATTCTCTGCTCTC
CTGCCCTCTCCGCACTATCCTTGTACTATATATGTTATCTCCGCCATTCC
CGAATCCAGATATACAACCATTTTGCATGTTCATTTGCTCCCTCTCATTT
AGAACCTTTATTTGTTTACCGCGAGAGCTAGCAGAAAATAAACAATGTTG
GCTGTCGTGTGGATGAATTGGTTTGGTTTTGTCTCGAATCTTTTGTACAT
ACACTTTTTTAATTTATCTTTTAAAAACTTCTGTTTCATTTTTATGTTTT
TTTCGCATTTTCATACGCTTATATGCCAGCCTATGTTCCTTCCACGCCAT
TACTTCAGACGCGCACATATTTAGTGGATGCTTGATTTGTATATAGAGAA
CGTATTAAGAACAAACACGAAGAAATAGCAAACCAAATAACGAAATGAAA
TAAATTAAGGAAATAAGCGAATTGTACTTAGGCAATATGCAGAAATTGGC
CCACTTATGGTCATCGAATGACACATTCCCAATACGAATCGGTTATAGCT
TTATCAATATTCCCCTTATCTTCCGCACACCCTAAAACATATTGTCAAGT
ATTTTAGCAACGATGCAAAAAAACTATGATAAATCCAAAGCCCACTACAT
GAACCTACTGCTAAATATACTGTATACTAAATAGACTGTATGCGCACTCT
ATGGTTAGTCCTATCTGGAATGATTGTTGAGCATTTATCCAAAAACAAAA
GAACCTACATTTGATAGTGAGGCGAAATTATTATCAATTCCGGTCCGACG
CGTGCTCACGCATGGCTTTTGATATATACTATAGACGAGAACAGGTTACA
ATCAAATGAAGAATATTGCAATGGCGAGAACCTTGCGAAGTATAAATAAA
ATATTAATGTTCGCTTGCTGCGTTTTATTTTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

LP12324.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
svr.j 3462 svr.j 355..2787 1..2433 12165 100 Plus
svr-RE 3306 svr-RE 355..2787 1..2433 12165 100 Plus
svr-RF 3143 svr-RF 929..2776 586..2433 9240 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 396870..397999 1303..2432 5650 100 Plus
chrX 22417052 chrX 390836..391423 1..588 2940 100 Plus
chrX 22417052 chrX 396322..396801 824..1303 2400 100 Plus
chrX 22417052 chrX 396018..396256 586..824 1195 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:56:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 502835..503965 1303..2433 5655 100 Plus
X 23542271 X 496803..497390 1..588 2940 100 Plus
X 23542271 X 502287..502766 824..1303 2400 100 Plus
X 23542271 X 501983..502221 586..824 1195 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 510933..512063 1303..2433 5655 100 Plus
X 23527363 X 504901..505488 1..588 2940 100 Plus
X 23527363 X 510385..510864 824..1303 2400 100 Plus
X 23527363 X 510081..510319 586..824 1195 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:34:26 has no hits.

LP12324.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:35:32 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 396020..396255 588..823 100 -> Plus
chrX 390836..391422 1..587 100 -> Plus
chrX 396322..396801 824..1303 100 -> Plus
chrX 396871..397999 1304..2432 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:42:07 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RE 1..1302 138..1439 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:47:46 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RE 1..1302 138..1439 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:47:21 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RE 1..1302 138..1439 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:28:53 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RE 1..1302 138..1439 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:20:55 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RE 1..1302 138..1439 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:57:20 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RE 333..2764 1..2432 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:47:46 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RE 333..2764 1..2432 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:47:21 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RE 358..2789 1..2432 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:28:54 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RE 333..2764 1..2432 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:20:55 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RE 358..2789 1..2432 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:32 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
X 496803..497389 1..587 100 -> Plus
X 501985..502220 588..823 100 -> Plus
X 502287..502766 824..1303 100 -> Plus
X 502836..503964 1304..2432 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:32 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
X 496803..497389 1..587 100 -> Plus
X 501985..502220 588..823 100 -> Plus
X 502287..502766 824..1303 100 -> Plus
X 502836..503964 1304..2432 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:32 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
X 496803..497389 1..587 100 -> Plus
X 501985..502220 588..823 100 -> Plus
X 502287..502766 824..1303 100 -> Plus
X 502836..503964 1304..2432 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:47:21 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 390836..391422 1..587 100 -> Plus
arm_X 396018..396253 588..823 100 -> Plus
arm_X 396320..396799 824..1303 100 -> Plus
arm_X 396869..397997 1304..2432 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:05:33 Download gff for LP12324.complete
Subject Subject Range Query Range Percent Splice Strand
X 504901..505487 1..587 100 -> Plus
X 510083..510318 588..823 100 -> Plus
X 510385..510864 824..1303 100 -> Plus
X 510934..512062 1304..2432 100   Plus

LP12324.pep Sequence

Translation from 137 to 1438

> LP12324.pep
MLFFCLALIIGCAVGEYSEVRVIQEEDNFLESPHYLKNEEIGDLFSQLAK
DYPDLAQTYTIGKSLEDRPIYALALSAPTGESKNGDLLRPMVKLVANIQG
DEAVGRQMVLYMAEYLATHYDGDPKVQALLNLTEIHFLPTCNPDGFAKAK
EGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAALV
NWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQLA
HTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCFEL
TIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFPIA
DANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQVRV
TNDNQEALRLDFKLAPVETNFDGISSFYSPYYF*

LP12324.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21938-PA 1607 GF21938-PA 192..590 22..423 1600 72.1 Plus
Dana\GF22654-PA 488 GF22654-PA 75..446 35..416 804 42.8 Plus
Dana\GF21938-PA 1607 GF21938-PA 620..1004 25..414 693 37.7 Plus
Dana\GF21938-PA 1607 GF21938-PA 27..162 16..150 506 69.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12791-PA 1589 GG12791-PA 177..575 22..423 1764 81.1 Plus
Dere\GG19068-PA 517 GG19068-PA 76..447 35..416 799 42.5 Plus
Dere\GG12791-PA 1589 GG12791-PA 1..150 1..150 715 88 Plus
Dere\GG12791-PA 1589 GG12791-PA 605..991 25..416 664 37.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24780-PA 1441 GH24780-PA 10..422 2..423 1598 69.2 Plus
Dgri\GH12395-PA 510 GH12395-PA 81..467 35..432 801 41.1 Plus
Dgri\GH24780-PA 1441 GH24780-PA 452..820 25..400 681 38.8 Plus
Dgri\GH24779-PA 182 GH24779-PA 37..181 18..150 480 61.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
svr-PJ 433 CG4122-PJ 1..433 1..433 2301 100 Plus
svr-PE 433 CG4122-PE 1..433 1..433 2301 100 Plus
svr-PH 1437 CG4122-PH 1..423 1..423 2245 100 Plus
svr-PD 1404 CG4122-PD 1..423 1..423 2245 100 Plus
svr-PL 435 CG4122-PL 28..435 23..433 1808 82.2 Plus
svr-PF 435 CG4122-PF 28..435 23..433 1808 82.2 Plus
svr-PN 1439 CG4122-PN 28..425 23..423 1752 81.8 Plus
svr-PM 1406 CG4122-PM 28..425 23..423 1752 81.8 Plus
svr-PG 1439 CG4122-PG 28..425 23..423 1752 81.8 Plus
svr-PB 1406 CG4122-PB 28..425 23..423 1752 81.8 Plus
svr-PI 1292 CG4122-PI 6..278 151..423 1466 100 Plus
CG4678-PL 474 CG4678-PL 72..443 35..416 778 42.5 Plus
CG4678-PI 513 CG4678-PI 72..443 35..416 778 42.5 Plus
CG4678-PF 479 CG4678-PF 72..448 35..416 769 41.7 Plus
CG4678-PD 518 CG4678-PD 72..448 35..416 769 41.7 Plus
CG4678-PJ 523 CG4678-PJ 72..453 35..416 768 41.5 Plus
CG4678-PG 488 CG4678-PG 72..457 35..416 761 40.8 Plus
CG4678-PE 527 CG4678-PE 72..457 35..416 761 40.8 Plus
CG4678-PK 404 CG4678-PK 14..334 89..416 721 44.9 Plus
svr-PH 1437 CG4122-PH 453..839 25..416 656 36.6 Plus
svr-PD 1404 CG4122-PD 453..839 25..416 656 36.6 Plus
svr-PN 1439 CG4122-PN 455..841 25..416 656 36.6 Plus
svr-PM 1406 CG4122-PM 455..841 25..416 656 36.6 Plus
svr-PG 1439 CG4122-PG 455..841 25..416 656 36.6 Plus
svr-PB 1406 CG4122-PB 455..841 25..416 656 36.6 Plus
svr-PI 1292 CG4122-PI 308..694 25..416 656 36.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15159-PA 1454 GI15159-PA 10..429 1..423 1797 76.1 Plus
Dmoj\GI14727-PA 437 GI14727-PA 56..425 35..414 800 42.7 Plus
Dmoj\GI15159-PA 1454 GI15159-PA 462..843 28..414 702 38.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20387-PA 1455 GL20387-PA 26..424 22..423 1673 75.1 Plus
Dper\GL26857-PA 537 GL26857-PA 72..462 35..414 738 39.6 Plus
Dper\GL20387-PA 1455 GL20387-PA 465..840 45..416 692 41 Plus
Dper\GL20386-PA 164 GL20386-PA 10..161 5..150 514 65.8 Plus
Dper\GL26374-PA 438 GL26374-PA 143..393 34..293 151 25 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29134-PA 1455 GA29134-PA 26..424 22..423 1676 75.4 Plus
Dpse\GA18350-PA 514 GA18350-PA 72..441 35..414 787 42.2 Plus
Dpse\GA29134-PA 1455 GA29134-PA 465..840 45..416 693 41 Plus
Dpse\GA29125-PA 164 GA29125-PA 24..161 16..150 497 68.1 Plus
Dpse\GA21166-PA 438 GA21166-PA 143..393 34..293 151 25 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19071-PA 1371 GM19071-PA 1..357 67..423 1911 98.3 Plus
Dsec\GM19071-PA 1371 GM19071-PA 387..773 25..416 664 37.4 Plus
Dsec\GM13459-PA 449 GM13459-PA 72..253 35..228 403 43.3 Plus
Dsec\GM19070-PA 60 GM19070-PA 1..55 1..59 207 66.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16509-PA 1439 GD16509-PA 27..425 22..423 1780 81.3 Plus
Dsim\GD16509-PA 1439 GD16509-PA 455..841 25..416 664 37.6 Plus
Dsim\GD17299-PA 258 GD17299-PA 72..253 35..228 404 43.3 Plus
Dsim\GD24843-PA 187 GD24843-PA 1..156 260..416 348 41.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14862-PA 1437 GJ14862-PA 5..417 3..423 1607 69.4 Plus
Dvir\GJ19439-PA 517 GJ19439-PA 55..424 35..414 795 42.5 Plus
Dvir\GJ14862-PA 1437 GJ14862-PA 447..831 25..414 688 39.7 Plus
Dvir\GJ14861-PA 164 GJ14861-PA 29..162 17..150 471 63.4 Plus
Dvir\GJ12997-PA 437 GJ12997-PA 142..392 34..293 152 26.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16509-PA 1452 GK16509-PA 33..429 24..423 1605 70.8 Plus
Dwil\GK25411-PA 474 GK25411-PA 66..437 35..416 806 43 Plus
Dwil\GK16509-PA 1452 GK16509-PA 429..843 15..414 664 37 Plus
Dwil\GK16508-PA 215 GK16508-PA 40..176 16..150 481 66.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16618-PA 1439 GE16618-PA 27..425 22..423 1766 80.3 Plus
Dyak\GE17613-PA 513 GE17613-PA 74..445 35..416 798 42.5 Plus
Dyak\GE16617-PA 153 GE16617-PA 4..151 3..150 717 91.2 Plus
Dyak\GE16618-PA 1439 GE16618-PA 455..841 25..416 659 37.3 Plus

LP12324.hyp Sequence

Translation from 137 to 1438

> LP12324.hyp
MLFFCLALIIGCAVGEYSEVRVIQEEDNFLESPHYLKNEEIGDLFSQLAK
DYPDLAQTYTIGKSLEDRPIYALALSAPTGESKNGDLLRPMVKLVANIQG
DEAVGRQMVLYMAEYLATHYDGDPKVQALLNLTEIHFLPTCNPDGFAKAK
EGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAALV
NWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQLA
HTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCFEL
TIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFPIA
DANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQVRV
TNDNQEALRLDFKLAPVETNFDGISSFYSPYYF*

LP12324.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
svr-PJ 433 CG4122-PJ 1..433 1..433 2301 100 Plus
svr-PE 433 CG4122-PE 1..433 1..433 2301 100 Plus
svr-PH 1437 CG4122-PH 1..423 1..423 2245 100 Plus
svr-PD 1404 CG4122-PD 1..423 1..423 2245 100 Plus
svr-PL 435 CG4122-PL 28..435 23..433 1808 82.2 Plus
svr-PH 1437 CG4122-PH 453..839 25..416 656 36.6 Plus
svr-PD 1404 CG4122-PD 453..839 25..416 656 36.6 Plus