Clone LP12677 Report

Search the DGRC for LP12677

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:126
Well:77
Vector:pOT2
Associated Gene/TranscriptCG30286-RB
Protein status:LP12677.pep: gold
Sequenced Size:920

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30286 2003-01-01 Sim4 clustering to Release 3
CG30286 2004-01-13 Blastp of sequenced clone
CG30286 2008-04-29 Release 5.5 accounting
CG30286 2008-08-15 Release 5.9 accounting
CG30286 2008-12-18 5.12 accounting

Clone Sequence Records

LP12677.complete Sequence

920 bp (920 high quality bases) assembled on 2004-01-13

GenBank Submission: BT011378

> LP12677.complete
CATACGCAATGTACTGGATTTTGCTGTTGACGTCTCTCTTGCCATGGCAT
CCCCATGCAACTGCCCAATTTCTGGAACCCGATTGTGGATATATGTCACC
GGAGGCACTCCAAAATGAGGAGCACCAGGCGCACATATCCGAGAGTCCTT
GGATGGCTTACTTGCACAAATCTGGCGAGCTTGTATGTGGCGGAACTCTC
GTAAATCATCGATTCATCCTGACAGCAGCACATTGCATACGAGAGGATGA
AAACTTGACTGTGCGACTGGGCGAGTTCAACAGCTTAACTAGTATCGACT
GCAACGGCTCCGATTGCCTGCCACCTTCCGAGGATTTTGAAATAGATGTG
GCCTTCAGGCATGGGGGCTATTCCAGAACCAATAGGATCCACGACATTGG
ACTTCTCCGGCTGGCCAAGTCGGTGGAGTATAAAGTTCACATTAAGCCCA
TTTGCCTGATCACAAATACGACCCTTCAGCCGAAGATTGAAAGACTCCAC
AGGCTGGTAGCCACTGGCTGGGGCCGCAGCCCATCGGAAGCTGCAAACCA
CATCCTAAAGTCCATTCGCGTAACCAGAGTGAATTGGGGTGTGTGCAGCA
AAACATACTGGGTTGACCGTCGTAGGGATCAGATCTGCGTGAGTCACGAG
TCCGGAGTGTCGTGCAGCGGCGACTCCGGCGGACCCATGGGCCAAGCCAT
TCGGCTCGACGGTCGAGTGCTCTTCGTTCAGGTCGGAATCGTTAGCTATG
GCAACGCTGAGTGCCTCAGTCCCAGTGTTTTCACAAACGTGATGGAACAT
ATTGATTGGATAATGGCGGCGTTGAGCACAACTCACATTTGAAGAATGCA
TTCTTTTATCAGCAAAAAATAAAAGTAAAATAATTAATTTTAAATCTCAT
TAAAAAAAAAAAAAAAAAAA

LP12677.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG30286-RB 946 CG30286-RB 41..942 1..902 4510 100 Plus
CG30286.a 959 CG30286.a 505..959 434..888 2275 100 Plus
CG30286.a 959 CG30286.a 9..443 1..435 2175 100 Plus
CG30286-RC 654 CG30286-RC 9..443 1..435 2175 100 Plus
CG30286-RC 654 CG30286-RC 505..654 434..583 750 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17422175..17422642 901..434 2310 99.6 Minus
chr2R 21145070 chr2R 17423041..17423251 211..1 1055 100 Minus
chr2R 21145070 chr2R 17422704..17422882 435..257 895 100 Minus
chr2R 21145070 chr2R 17422940..17422986 257..211 235 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:56:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21535715..21536183 902..434 2345 100 Minus
2R 25286936 2R 21536582..21536792 211..1 1055 100 Minus
2R 25286936 2R 21536245..21536423 435..257 895 100 Minus
2R 25286936 2R 21536481..21536527 257..211 235 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21536914..21537382 902..434 2345 100 Minus
2R 25260384 2R 21537781..21537991 211..1 1055 100 Minus
2R 25260384 2R 21537444..21537622 435..257 895 100 Minus
2R 25260384 2R 21537680..21537726 257..211 235 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:30:16 has no hits.

LP12677.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:31:14 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17422941..17422986 211..256 100 <- Minus
chr2R 17422215..17422640 436..861 99 <- Minus
chr2R 17422704..17422882 257..435 100 <- Minus
chr2R 17423042..17423251 1..210 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:42:12 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
CG30286-RA 1..134 55..188 100 == Plus
CG30286-RA 135..732 245..842 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:41:03 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
CG30286-RB 1..834 9..842 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:13:49 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
CG30286-RB 1..834 9..842 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:30:09 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
CG30286-RA 1..134 55..188 100 == Plus
CG30286-RA 135..732 245..842 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:44 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
CG30286-RB 1..834 9..842 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:50:35 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
CG30286-RA 1..134 55..188 100 == Plus
CG30286-RA 135..732 245..842 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:41:03 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
CG30286-RB 4..904 1..901 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:13:49 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
CG30286-RB 4..904 1..901 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:30:09 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
CG30286-RA 1..134 55..188 100 == Plus
CG30286-RA 135..732 245..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:44 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
CG30286-RB 4..904 1..901 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:31:14 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21535716..21536181 436..901 100 <- Minus
2R 21536245..21536423 257..435 100 <- Minus
2R 21536482..21536527 211..256 100 <- Minus
2R 21536583..21536792 1..210 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:31:14 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21535716..21536181 436..901 100 <- Minus
2R 21536245..21536423 257..435 100 <- Minus
2R 21536482..21536527 211..256 100 <- Minus
2R 21536583..21536792 1..210 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:31:14 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21535716..21536181 436..901 100 <- Minus
2R 21536245..21536423 257..435 100 <- Minus
2R 21536482..21536527 211..256 100 <- Minus
2R 21536583..21536792 1..210 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:13:49 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17423221..17423686 436..901 100 <- Minus
arm_2R 17423750..17423928 257..435 100 <- Minus
arm_2R 17423987..17424032 211..256 100 <- Minus
arm_2R 17424088..17424297 1..210 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:02:19 Download gff for LP12677.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21536915..21537380 436..901 100 <- Minus
2R 21537444..21537622 257..435 100 <- Minus
2R 21537681..21537726 211..256 100 <- Minus
2R 21537782..21537991 1..210 100   Minus

LP12677.hyp Sequence

Translation from 2 to 841

> LP12677.hyp
YAMYWILLLTSLLPWHPHATAQFLEPDCGYMSPEALQNEEHQAHISESPW
MAYLHKSGELVCGGTLVNHRFILTAAHCIREDENLTVRLGEFNSLTSIDC
NGSDCLPPSEDFEIDVAFRHGGYSRTNRIHDIGLLRLAKSVEYKVHIKPI
CLITNTTLQPKIERLHRLVATGWGRSPSEAANHILKSIRVTRVNWGVCSK
TYWVDRRRDQICVSHESGVSCSGDSGGPMGQAIRLDGRVLFVQVGIVSYG
NAECLSPSVFTNVMEHIDWIMAALSTTHI*

LP12677.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG30286-PB 277 CG30286-PB 1..277 3..279 1494 100 Plus
CG30286-PC 152 CG30286-PC 1..142 3..144 775 100 Plus
CG30090-PA 291 CG30090-PA 23..283 22..279 547 39.5 Plus
CG30083-PB 279 CG30083-PB 1..256 3..271 506 37.7 Plus
CG30087-PA 277 CG30087-PA 7..274 5..274 495 37.4 Plus

LP12677.pep Sequence

Translation from 2 to 841

> LP12677.pep
YAMYWILLLTSLLPWHPHATAQFLEPDCGYMSPEALQNEEHQAHISESPW
MAYLHKSGELVCGGTLVNHRFILTAAHCIREDENLTVRLGEFNSLTSIDC
NGSDCLPPSEDFEIDVAFRHGGYSRTNRIHDIGLLRLAKSVEYKVHIKPI
CLITNTTLQPKIERLHRLVATGWGRSPSEAANHILKSIRVTRVNWGVCSK
TYWVDRRRDQICVSHESGVSCSGDSGGPMGQAIRLDGRVLFVQVGIVSYG
NAECLSPSVFTNVMEHIDWIMAALSTTHI*

LP12677.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13370-PA 505 GF13370-PA 6..282 20..279 442 32.5 Plus
Dana\GF11497-PA 284 GF11497-PA 1..268 3..270 378 32.6 Plus
Dana\GF23281-PA 372 GF23281-PA 105..368 27..275 353 34.7 Plus
Dana\GF19774-PA 272 GF19774-PA 8..251 6..270 348 32 Plus
Dana\GF11318-PA 308 GF11318-PA 1..219 51..279 333 31.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20771-PA 275 GG20771-PA 1..272 3..274 1123 75.7 Plus
Dere\GG20540-PA 291 GG20540-PA 20..283 19..279 509 36.7 Plus
Dere\GG16935-PA 279 GG16935-PA 17..276 19..275 492 37.9 Plus
Dere\GG20542-PA 281 GG20542-PA 10..278 4..276 472 36.3 Plus
Dere\GG20543-PA 280 GG20543-PA 23..278 21..277 440 36.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20292-PA 242 GH20292-PA 4..239 49..274 385 38.1 Plus
Dgri\GH20624-PA 374 GH20624-PA 107..369 28..275 373 36 Plus
Dgri\GH17524-PA 374 GH17524-PA 107..369 28..275 373 36 Plus
Dgri\GH20291-PA 237 GH20291-PA 13..234 59..274 368 38.7 Plus
Dgri\GH23917-PA 235 GH23917-PA 7..232 41..274 334 35.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG30286-PB 277 CG30286-PB 1..277 3..279 1494 100 Plus
CG30286-PC 152 CG30286-PC 1..142 3..144 775 100 Plus
CG30090-PA 291 CG30090-PA 23..283 22..279 547 39.5 Plus
CG30083-PB 279 CG30083-PB 1..256 3..271 506 37.7 Plus
CG30087-PA 277 CG30087-PA 7..274 5..274 495 37.4 Plus
CG43335-PA 281 CG43335-PA 7..277 7..275 489 37.2 Plus
CG33462-PA 300 CG33462-PA 25..269 24..270 474 35.6 Plus
CG30088-PB 281 CG30088-PB 26..272 21..270 465 39.1 Plus
CG30082-PB 280 CR30082-PB 5..273 5..272 454 36.6 Plus
CG18636-PA 349 CG18636-PA 26..279 21..271 448 36.1 Plus
CG43336-PA 279 CG43336-PA 18..273 20..272 447 37 Plus
CG33461-PB 287 CG33461-PB 23..278 19..270 438 34 Plus
CG18420-PA 299 CG18420-PA 11..264 6..270 405 35.3 Plus
CG30283-PB 273 CG30283-PB 11..272 6..279 392 33 Plus
CG30287-PA 284 CG30287-PA 8..277 6..270 388 31.2 Plus
CG33458-PA 281 CG33458-PA 25..277 24..276 385 33.9 Plus
CG33459-PA 284 CG33459-PA 19..272 18..270 384 33.1 Plus
CG30091-PA 526 CG30091-PA 5..273 5..270 381 31.4 Plus
CG30289-PA 316 CG30289-PA 47..271 42..270 362 33.2 Plus
CG33226-PC 292 CG33226-PC 8..282 1..270 356 31.5 Plus
grass-PA 335 CG5896-PA 68..332 27..276 353 33.8 Plus
grass-PB 377 CG5896-PB 110..374 27..276 353 33.8 Plus
CG10764-PA 523 CG10764-PA 24..265 22..275 351 31.4 Plus
CG30414-PC 305 CG30414-PC 21..294 19..274 344 32.3 Plus
CG30414-PB 305 CG30414-PB 21..294 19..274 344 32.3 Plus
CG14227-PB 286 CG14227-PB 9..281 6..274 341 30.9 Plus
CG30187-PE 489 CG30187-PE 40..269 41..279 340 32.8 Plus
CG30187-PF 500 CG30187-PF 40..269 41..279 340 32.8 Plus
CG43110-PA 483 CG43110-PA 3..254 1..270 336 31.5 Plus
CG43110-PB 483 CG43110-PB 3..254 1..270 336 31.5 Plus
MP1-PA 390 CG1102-PA 138..384 47..270 333 36.4 Plus
MP1-PC 399 CG1102-PC 147..393 47..270 333 36.4 Plus
MP1-PE 400 CG1102-PE 148..394 47..270 333 36.4 Plus
CG30288-PC 282 CG30288-PC 23..271 20..271 327 32.6 Plus
CG33225-PB 292 CG33225-PB 8..282 6..278 326 28.6 Plus
CG33225-PC 307 CG33225-PC 23..297 6..278 326 28.6 Plus
CG30098-PA 264 CG30098-PA 46..259 48..274 325 31.8 Plus
CG1773-PA 317 CG1773-PA 9..306 2..275 322 30.5 Plus
CG33465-PC 488 CG33465-PC 19..261 21..270 319 30.7 Plus
Sp7-PF 391 CG3066-PF 126..389 26..274 317 34.3 Plus
Sp7-PE 391 CG3066-PE 126..389 26..274 317 34.3 Plus
Sp7-PA 391 CG3066-PA 126..389 26..274 317 34.3 Plus
CG4650-PB 299 CG4650-PB 20..260 20..272 309 29.5 Plus
CG30002-PB 311 CG30002-PB 67..306 42..275 303 32.1 Plus
CG9733-PB 417 CG9733-PB 150..411 26..270 303 33 Plus
CG9733-PA 418 CG9733-PA 151..412 26..270 303 33 Plus
CG11313-PC 367 CG11313-PC 124..361 45..270 298 33.2 Plus
ea-PA 392 CG4920-PA 103..392 14..276 297 30.1 Plus
CG16710-PB 372 CG16710-PB 97..363 28..271 295 32.7 Plus
CG5909-PA 381 CG5909-PA 136..376 43..270 295 32.2 Plus
ea-PB 261 CG4920-PB 5..261 45..276 294 31.4 Plus
CG30091-PA 526 CG30091-PA 293..520 27..270 217 26.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23202-PA 376 GI23202-PA 109..372 27..275 379 36.6 Plus
Dmoj\GI22268-PA 380 GI22268-PA 119..375 27..270 354 35.1 Plus
Dmoj\GI24127-PA 389 GI24127-PA 126..383 26..270 314 34.1 Plus
Dmoj\GI10853-PA 285 GI10853-PA 6..283 10..274 309 32.3 Plus
Dmoj\GI24877-PA 392 GI24877-PA 133..390 42..274 306 32.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11858-PA 345 GL11858-PA 8..278 6..270 623 42.7 Plus
Dper\GL11857-PA 283 GL11857-PA 8..281 6..279 584 42.1 Plus
Dper\GL17488-PA 282 GL17488-PA 10..273 8..270 578 41.1 Plus
Dper\GL10743-PA 279 GL10743-PA 1..278 7..278 495 37 Plus
Dper\GL11321-PA 284 GL11321-PA 3..281 4..278 489 37.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25145-PA 345 GA25145-PA 20..278 19..270 617 43.3 Plus
Dpse\GA15642-PA 283 GA15642-PA 8..281 6..279 584 42.4 Plus
Dpse\GA24176-PA 282 GA24176-PA 10..273 8..270 584 41.5 Plus
Dpse\GA24468-PA 278 GA24468-PA 1..277 6..278 513 36.4 Plus
Dpse\GA24685-PA 284 GA24685-PA 3..273 1..270 469 38.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15715-PA 277 GM15715-PA 1..276 3..278 1333 89.9 Plus
Dsec\GM21631-PA 291 GM21631-PA 20..283 19..279 532 37.4 Plus
Dsec\GM20123-PA 263 GM20123-PA 2..243 21..274 508 38.7 Plus
Dsec\GM21633-PA 279 GM21633-PA 7..274 5..274 497 37 Plus
Dsec\GM21635-PA 302 GM21635-PA 24..269 23..270 497 37.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11133-PA 295 GD11133-PA 20..283 19..279 529 37.5 Plus
Dsim\GD11137-PA 302 GD11137-PA 24..269 23..270 499 37.1 Plus
Dsim\GD25600-PA 263 GD25600-PA 2..243 21..274 494 38.3 Plus
Dsim\GD19032-PA 401 GD19032-PA 142..392 21..270 481 37.8 Plus
Dsim\GD11135-PA 278 GD11135-PA 7..275 5..274 475 36.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21212-PA 268 GJ21212-PA 2..261 21..270 437 36.2 Plus
Dvir\GJ21214-PA 280 GJ21214-PA 18..273 25..270 433 37.9 Plus
Dvir\GJ21978-PA 296 GJ21978-PA 49..288 41..270 433 37.9 Plus
Dvir\GJ22863-PA 372 GJ22863-PA 106..363 28..270 360 34.4 Plus
Dvir\GJ24059-PA 397 GJ24059-PA 138..392 27..270 355 35.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11884-PA 375 GK11884-PA 121..371 41..275 351 35.1 Plus
Dwil\GK23933-PA 280 GK23933-PA 12..260 42..277 340 33.7 Plus
Dwil\GK10951-PA 391 GK10951-PA 139..385 47..270 332 36 Plus
Dwil\GK11130-PA 392 GK11130-PA 100..390 11..274 322 32.7 Plus
Dwil\GK11885-PA 388 GK11885-PA 127..387 27..274 315 31 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13707-PA 275 GE13707-PA 1..274 3..276 1140 74.8 Plus
Dyak\GE11725-PA 296 GE11725-PA 20..274 19..274 524 39.8 Plus
Dyak\GE24322-PA 279 GE24322-PA 17..271 19..270 502 39.8 Plus
Dyak\GE11729-PA 289 GE11729-PA 29..280 23..270 465 38.1 Plus
Dyak\GE11727-PA 280 GE11727-PA 7..275 5..274 465 38.8 Plus