Clone LP13185 Report

Search the DGRC for LP13185

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:131
Well:85
Vector:pOT2
Associated Gene/TranscriptCG34348-RA
Protein status:LP13185.pep: gold
Sequenced Size:1634

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11757 2003-01-01 Sim4 clustering to Release 3
CG11757 2004-08-13 Blastp of sequenced clone
CG34348 2008-04-29 Release 5.5 accounting
CG34348 2008-08-15 Release 5.9 accounting
CG34348 2008-12-18 5.12 accounting

Clone Sequence Records

LP13185.complete Sequence

1634 bp (1634 high quality bases) assembled on 2004-08-13

GenBank Submission: BT016063

> LP13185.complete
ATGGAATTTCTGGAGAACCTGTACAAAACGCTGCACTCCCTGTTGTCCTC
CTACATCGATCTGGACTATTCGCTATGGCTATATCGCTTCCTCACCCCCC
TGATTGTCACCTTTCTGCTGCCGCTGGTCTTCGTGGCCCTCATCTACATT
TCGTTCCTGGTGCTATTCATCTACAAGCTGCACAGGCAGGTAATAATGCG
CGCCGTGCAGGGCGATCGCAATTTTTGGCGAGTGGGCCGCAAGATAGTGG
CCGCCATTTGGGATGCACATGCTCGGATCTATCATGGCTACGAGGTGATC
GGATTGGAGAATGTGCCACAGGAGGGACCGGCGCTGATTGTCTACTATCA
TGGCGCCATACCCATCGATATGTACTACTTGAATTCGCGAATGTTGCTGC
AGCGCGAGCGTTTGATCTACACGATCGGCGATCGATTTCTGTTCAAGCTG
CCCGGCTGGGGCACCATCTCTGAGGCATTCCACGTCAGTCCCGGCACGGT
GCAGTCGTGCGTTAGCATTTTGCGGGATGGCAATCTGCTGGCCATTTCGC
CGGGCGGCGTTTATGAGGCACAGTTCGGTGATCACTACTACGAGCTGTTG
TGGCGCAATCGTGTCGGTTTCGCCAAGGTGGCCATCGAGGCAAAGGCGCC
CATCATTCCCTGCTTTACGCAGAATCTGCGCGAGGGCTTCCGTCAGGTGG
GCATCTTTCGGACGTTCTTCATGCGACTGTACAATAAGGTGCGCATACCG
GTGTATCCCATCTACGGTGGCTTTCCCGTCAAGTTTCGGACGTATCTGGG
CAAGCCTATACCCTACGATGAGAACCTAACCCCGCAGGATCTGCAAATCA
AGGTGGCTACGGCTATCGAGGATCTGATCAATCAACACCAGCGACTGCCC
GGCAGCATCCTGCTGGCTCTGCTGGATCGACTGCCCACGTTTAGGCGACG
CGTACGGCGGAAGGAGGAGTGATCCATGATCGTTTAGCGCATAGAGAGAT
TAACAGATTGAGCTTGGTCCTGGCCATACAAAACAGACTTTGTTCCATGT
ACTTGATGACAGTACTTCATGGCAGCGCCATATATGCATATATCTCACTT
TGTAAATGCCTACCCAGAACTTTTGCCTTCGAGTTGATTGCGATCCGGAC
GAGCTGTGGCTCGAGTATGAGTGATTCGATTAGCCCTTTAGATATGACTA
AGCACTTGAGTTAAGCAGCGAACAAAGAGGAACTGCATCCTCCAGCTAAA
TGTTTTGTATATGCATGCAGAGTGTCTCCTCGAAGGAGGCACATGCCACT
TGACCACTTTCCCTTCTTTCATCCGCTTTCCTTTTAGCATAAATGTAGGC
ACATTAAGCAATTATGTCGCTAGTTTTCCATTAGGTATATCATTTTTGTA
CCTTTTTTTAATGCAACAGTAGAATGAAATACGATTTACATATATGTATG
TATGTATGTATCATCAGCCTGCGTGTGTGTATGTGTGTGTGTGTGCGATT
GTGTGTGTGTACTATATAGTTAAGAAAATCGTGTATAATATAGCTATAAC
ACCGGAGTATTCCCAGCGACAGGAATTTTCAATAGATCTATGGAATAAAA
GTGGAAAAACTGAAAAAAAAAAAAAAAAAAAAAA

LP13185.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG34348-RA 1840 CG34348-RA 228..1840 1..1614 8030 99.9 Plus
CG34348.b 1632 CG34348.b 24..1632 1..1614 7945 99.6 Plus
CG34348.a 1726 CG34348.a 159..1726 46..1614 7805 99.9 Plus
CG34348.a 1726 CG34348.a 64..109 1..46 230 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11235118..11235878 851..1612 3730 99.6 Plus
chrX 22417052 chrX 11234387..11235059 183..855 3305 99.4 Plus
chrX 22417052 chrX 11231759..11231898 47..186 700 100 Plus
chrX 22417052 chrX 11231604..11231649 1..46 230 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:56:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11343974..11344736 851..1614 3770 99.9 Plus
X 23542271 X 11343243..11343915 183..855 3365 100 Plus
X 23542271 X 11340607..11340746 47..186 700 100 Plus
X 23542271 X 11340452..11340497 1..46 230 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11352072..11352834 851..1614 3780 99.8 Plus
X 23527363 X 11351341..11352013 183..855 3365 100 Plus
X 23527363 X 11348705..11348844 47..186 700 100 Plus
X 23527363 X 11348550..11348595 1..46 230 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:35:05 has no hits.

LP13185.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:35:54 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11231604..11231649 1..46 100 -> Plus
chrX 11231759..11231897 47..185 100 -> Plus
chrX 11234390..11235056 186..852 99 -> Plus
chrX 11235120..11235878 853..1612 94   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:42:21 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
CG34348-RA 1..972 1..972 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:32:38 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
CG34348-RA 1..972 1..972 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:26:03 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
CG34348-RA 1..972 1..972 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:16:29 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
CG34348-RA 1..972 1..972 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:02 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
CG34348-RA 1..972 1..972 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:37:55 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
CG34348-RA 1..1611 1..1612 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:32:37 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
CG34348-RA 1..1611 1..1612 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:26:03 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
CG34348-RA 580..2190 1..1612 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:16:29 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
CG34348-RA 1..1611 1..1612 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:02 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
CG34348-RA 580..2190 1..1612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:35:54 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
X 11340452..11340497 1..46 100 -> Plus
X 11340607..11340745 47..185 100 -> Plus
X 11343246..11343912 186..852 100 -> Plus
X 11343976..11344734 853..1612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:35:54 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
X 11340452..11340497 1..46 100 -> Plus
X 11340607..11340745 47..185 100 -> Plus
X 11343246..11343912 186..852 100 -> Plus
X 11343976..11344734 853..1612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:35:54 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
X 11340452..11340497 1..46 100 -> Plus
X 11340607..11340745 47..185 100 -> Plus
X 11343246..11343912 186..852 100 -> Plus
X 11343976..11344734 853..1612 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:26:03 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11234640..11234778 47..185 100 -> Plus
arm_X 11234485..11234530 1..46 100 -> Plus
arm_X 11237279..11237945 186..852 100 -> Plus
arm_X 11238009..11238767 853..1612 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:53:27 Download gff for LP13185.complete
Subject Subject Range Query Range Percent Splice Strand
X 11351344..11352010 186..852 100 -> Plus
X 11352074..11352832 853..1612 99   Plus
X 11348550..11348595 1..46 100 -> Plus
X 11348705..11348843 47..185 100 -> Plus

LP13185.pep Sequence

Translation from 0 to 971

> LP13185.pep
MEFLENLYKTLHSLLSSYIDLDYSLWLYRFLTPLIVTFLLPLVFVALIYI
SFLVLFIYKLHRQVIMRAVQGDRNFWRVGRKIVAAIWDAHARIYHGYEVI
GLENVPQEGPALIVYYHGAIPIDMYYLNSRMLLQRERLIYTIGDRFLFKL
PGWGTISEAFHVSPGTVQSCVSILRDGNLLAISPGGVYEAQFGDHYYELL
WRNRVGFAKVAIEAKAPIIPCFTQNLREGFRQVGIFRTFFMRLYNKVRIP
VYPIYGGFPVKFRTYLGKPIPYDENLTPQDLQIKVATAIEDLINQHQRLP
GSILLALLDRLPTFRRRVRRKEE*

LP13185.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21763-PA 323 GF21763-PA 1..323 1..323 1629 94.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18403-PA 323 GG18403-PA 1..323 1..323 1688 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24072-PA 331 GH24072-PA 1..316 1..316 1570 93.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG34348-PA 323 CG34348-PA 1..323 1..323 1694 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15521-PA 331 GI15521-PA 1..321 1..321 1529 88.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22433-PA 326 GL22433-PA 1..316 1..316 1599 95.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11177-PA 326 GA11177-PA 1..316 1..316 1599 95.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11469-PA 323 GM11469-PA 1..323 1..323 1696 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17011-PA 323 GD17011-PA 1..323 1..323 1692 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17132-PA 226 GJ17132-PA 1..221 66..286 1136 95.5 Plus
Dvir\GJ19278-PA 52 GJ19278-PA 1..37 280..316 166 83.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18856-PA 231 GK18856-PA 1..227 66..292 1144 93 Plus
Dwil\GK25683-PA 50 GK25683-PA 1..34 285..317 144 85.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15922-PA 323 GE15922-PA 1..323 1..323 1686 99.1 Plus

LP13185.hyp Sequence

Translation from 1 to 971

> LP13185.hyp
MEFLENLYKTLHSLLSSYIDLDYSLWLYRFLTPLIVTFLLPLVFVALIYI
SFLVLFIYKLHRQVIMRAVQGDRNFWRVGRKIVAAIWDAHARIYHGYEVI
GLENVPQEGPALIVYYHGAIPIDMYYLNSRMLLQRERLIYTIGDRFLFKL
PGWGTISEAFHVSPGTVQSCVSILRDGNLLAISPGGVYEAQFGDHYYELL
WRNRVGFAKVAIEAKAPIIPCFTQNLREGFRQVGIFRTFFMRLYNKVRIP
VYPIYGGFPVKFRTYLGKPIPYDENLTPQDLQIKVATAIEDLINQHQRLP
GSILLALLDRLPTFRRRVRRKEE*

LP13185.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG34348-PA 323 CG34348-PA 1..323 1..323 1694 100 Plus