Clone LP13334 Report

Search the DGRC for LP13334

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:133
Well:34
Vector:pOT2
Associated Gene/TranscriptCG5883-RA
Protein status:LP13334.pep: gold
Sequenced Size:1146

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
cg5883-ra 2011-07-21 Manual selection by Sue Celniker

Clone Sequence Records

LP13334.complete Sequence

1146 bp assembled on 2011-11-03

GenBank Submission: BT132744.1

> LP13334.complete
TTAAAGTGTAGGAAGAAGTATTTCAAAATGCGAGGACTTCCTAGTTCTTT
GGTCCTTCAAGCCTTGTTGCTGGCCGTGATGGTTCATCAGAGCATTCAAA
CGCGTTACTTAAACGCCACCGACGATATCTGTCGACTTTTCAAGGATGGT
ACCCAACTCTTGAAGCCCGGATCCTGCAGCGAATCGATTATTTGCCAAAA
CTTTGAATCAACACCAGGTATAACGTGCTCGGGCTCTAAACCGTACTACA
GTAAGTCCAAGGGTTCATGCCAAGCGTCCGCGGATACTTACTGCGATACA
AGCAAAATATGCAAGGGATCTGGAACGGGCTATATTGGTGATACCATAAA
TTGTGCCAACTGGTATTACTGTGATGCGGATGCGTTGTTGGGCAAAGGAA
CATGCAACCTGGGAATGTACTTCGATCAAGTAAGCAAGAGTTGCGTTTAT
TCGGAGGACACAGTTTGTGCCGCCAAATATGAGATCTGCGACGTTGCGCC
CGTAGGCACACCATTCCGCGATGATGCCAACTGCCACAAGTACTATACCT
GCAGCAGTAAGAGCCTGGTGGAAAATACATGCGAAAATGGACTGTATTAC
AACGTGGCCACCGGAACTTGTGTGAGGAAAAAGGACGTTATCTGCGAGAA
CCATCCGTTGCCAGATGAGGTGTGTGGCAACAAGAAGCTGGCGGTGCGCA
ACAAATTCGTTTCAGATATGGCCACATGTCGCGGATATTACTACTGCCGC
GATTTGGGATCCGGTATCCCCGATACCGATCCCATATACCAGCAGTGTGA
CGAGAACAACTTCTTCAACCAGGAGCGACAGGCGTGCATGCCGCGCGAGA
GCCAGAAATGCGATTACGATAGATGTGATGGGCGCAAGGATGGCTTCGAA
GTGGCCGAAATCGATGGATGCCACCACTACATCGAATGCGTCGATGGCCG
GGAAACGACTCCCATAAGCTGTGAGGATAAGTATTTCGACGTTGTCACGC
AAAACTGCAGCTCAACTCACTTAGTTTACGGAGCTTGTTCCTCTTAACTG
CTAGGCATTTGCCAGCTGTTCGTAAAGTATTAATTAATTGCAAATAAAAA
ACCAATATCAGTGTACATACATGAAAAAAAAAAAAAAAAAAAAAAA

LP13334.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11934489..11935579 1123..33 5395 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11943637..11944730 1126..33 5470 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11936737..11937830 1126..33 5470 100 Minus
3L 28103327 3L 11937895..11937929 35..1 175 100 Minus
Blast to na_te.dros performed on 2019-03-15 11:14:20 has no hits.

LP13334.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:15:27 Download gff for LP13334.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11934489..11935577 35..1123 99 <- Minus
chr3L 11935645..11935678 1..34 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-11-03 16:50:06 Download gff for LP13334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5883-RA 1..1020 28..1047 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:39:51 Download gff for LP13334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5883-RA 1..1020 28..1047 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:26:38 Download gff for LP13334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5883-RA 1..1020 28..1047 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-03 16:50:06 Download gff for LP13334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5883-RA 18..1132 1..1115 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:39:51 Download gff for LP13334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5883-RA 24..1146 1..1123 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:38 Download gff for LP13334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5883-RA 24..1146 1..1123 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:15:27 Download gff for LP13334.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11944796..11944829 1..34 100   Minus
3L 11943640..11944728 35..1123 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:15:27 Download gff for LP13334.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11944796..11944829 1..34 100   Minus
3L 11943640..11944728 35..1123 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:15:27 Download gff for LP13334.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11944796..11944829 1..34 100   Minus
3L 11943640..11944728 35..1123 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:39:51 Download gff for LP13334.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11936740..11937828 35..1123 100 <- Minus
arm_3L 11937896..11937929 1..34 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:38:12 Download gff for LP13334.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11936740..11937828 35..1123 100 <- Minus
3L 11937896..11937929 1..34 100   Minus

LP13334.hyp Sequence

Translation from 0 to 1046

> LP13334.hyp
LKCRKKYFKMRGLPSSLVLQALLLAVMVHQSIQTRYLNATDDICRLFKDG
TQLLKPGSCSESIICQNFESTPGITCSGSKPYYSKSKGSCQASADTYCDT
SKICKGSGTGYIGDTINCANWYYCDADALLGKGTCNLGMYFDQVSKSCVY
SEDTVCAAKYEICDVAPVGTPFRDDANCHKYYTCSSKSLVENTCENGLYY
NVATGTCVRKKDVICENHPLPDEVCGNKKLAVRNKFVSDMATCRGYYYCR
DLGSGIPDTDPIYQQCDENNFFNQERQACMPRESQKCDYDRCDGRKDGFE
VAEIDGCHHYIECVDGRETTPISCEDKYFDVVTQNCSSTHLVYGACSS*

LP13334.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5883-PA 339 CG5883-PA 1..339 10..348 1884 100 Plus
CG17145-PB 334 CG17145-PB 27..334 41..348 572 35.8 Plus
CG17145-PA 334 CG17145-PA 27..334 41..348 572 35.8 Plus
CG17147-PB 337 CG17147-PB 1..332 10..346 510 34 Plus
CG6996-PC 364 CG6996-PC 28..331 43..346 425 32.4 Plus
CG17145-PB 334 CG17145-PB 20..199 153..342 172 25.3 Plus
CG17145-PA 334 CG17145-PA 20..199 153..342 172 25.3 Plus

LP13334.pep Sequence

Translation from 0 to 1046

> LP13334.pep
LKCRKKYFKMRGLPSSLVLQALLLAVMVHQSIQTRYLNATDDICRLFKDG
TQLLKPGSCSESIICQNFESTPGITCSGSKPYYSKSKGSCQASADTYCDT
SKICKGSGTGYIGDTINCANWYYCDADALLGKGTCNLGMYFDQVSKSCVY
SEDTVCAAKYEICDVAPVGTPFRDDANCHKYYTCSSKSLVENTCENGLYY
NVATGTCVRKKDVICENHPLPDEVCGNKKLAVRNKFVSDMATCRGYYYCR
DLGSGIPDTDPIYQQCDENNFFNQERQACMPRESQKCDYDRCDGRKDGFE
VAEIDGCHHYIECVDGRETTPISCEDKYFDVVTQNCSSTHLVYGACSS*

LP13334.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24498-PA 340 GF24498-PA 1..340 10..348 1043 57 Plus
Dana\GF25314-PA 336 GF25314-PA 30..331 41..346 446 33.2 Plus
Dana\GF25313-PA 317 GF25313-PA 30..317 41..347 427 34.1 Plus
Dana\GF25312-PA 347 GF25312-PA 7..331 22..346 381 32.1 Plus
Dana\GF24479-PA 366 GF24479-PA 7..358 15..348 269 27 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13869-PA 322 GG13869-PA 1..322 27..348 1487 84.5 Plus
Dere\GG16087-PA 333 GG16087-PA 27..332 41..346 481 34.7 Plus
Dere\GG16088-PA 336 GG16088-PA 29..331 41..346 442 35.4 Plus
Dere\GG16084-PA 352 GG16084-PA 6..333 17..348 373 30.9 Plus
Dere\GG13334-PA 359 GG13334-PA 4..358 15..347 245 26.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14443-PA 346 GH14443-PA 5..346 9..347 865 47.1 Plus
Dgri\GH11417-PA 302 GH11417-PA 1..302 46..346 481 34.9 Plus
Dgri\GH16338-PA 304 GH16338-PA 1..300 43..346 414 33.2 Plus
Dgri\GH15115-PA 336 GH15115-PA 11..336 42..348 259 26.7 Plus
Dgri\GH16336-PA 324 GH16336-PA 1..298 53..346 258 27.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5883-PA 339 CG5883-PA 1..339 10..348 1884 100 Plus
CG17145-PB 334 CG17145-PB 27..334 41..348 572 35.8 Plus
CG17145-PA 334 CG17145-PA 27..334 41..348 572 35.8 Plus
CG17147-PB 337 CG17147-PB 1..332 10..346 510 34 Plus
CG6996-PC 364 CG6996-PC 28..331 43..346 425 32.4 Plus
CG6996-PB 364 CG6996-PB 28..331 43..346 425 32.4 Plus
CG7017-PB 359 CG7017-PB 4..358 15..347 264 25.8 Plus
CG7017-PA 359 CG7017-PA 4..358 15..347 264 25.8 Plus
CG7298-PA 369 CG7298-PA 5..336 18..338 258 25.6 Plus
CG6933-PE 351 CG6933-PE 27..347 41..348 241 25.1 Plus
CG6933-PB 351 CG6933-PB 27..347 41..348 241 25.1 Plus
CG6933-PA 351 CG6933-PA 27..347 41..348 241 25.1 Plus
CG6933-PD 363 CG6933-PD 39..359 41..348 241 25.1 Plus
CG6933-PC 363 CG6933-PC 39..359 41..348 241 25.1 Plus
CG7290-PB 419 CG7290-PB 31..322 43..329 233 24.6 Plus
CG7290-PA 419 CG7290-PA 31..322 43..329 233 24.6 Plus
CG5897-PC 343 CG5897-PC 26..339 41..346 226 23.9 Plus
CG43896-PB 1324 CG43896-PB 94..387 42..336 210 23.4 Plus
CG43896-PD 2113 CG43896-PD 94..387 42..336 210 23.4 Plus
CG43896-PC 2113 CG43896-PC 94..387 42..336 210 23.4 Plus
CG43896-PB 1324 CG43896-PB 39..314 55..316 203 21.3 Plus
CG43896-PD 2113 CG43896-PD 39..314 55..316 203 21.3 Plus
CG43896-PC 2113 CG43896-PC 39..314 55..316 203 21.3 Plus
CG31077-PB 988 CG31077-PB 69..357 36..336 190 22.9 Plus
CG17826-PA 751 CG17826-PA 20..285 36..336 184 23 Plus
CG31077-PB 988 CG31077-PB 32..246 99..337 183 25.9 Plus
CG17826-PA 751 CG17826-PA 383..664 36..336 182 25.5 Plus
CG17826-PA 751 CG17826-PA 62..391 36..336 177 22 Plus
CG43896-PB 1324 CG43896-PB 539..799 39..328 176 25.2 Plus
CG43896-PD 2113 CG43896-PD 539..799 39..328 176 25.2 Plus
CG43896-PC 2113 CG43896-PC 539..799 39..328 176 25.2 Plus
CG17826-PA 751 CG17826-PA 171..497 36..336 174 23.3 Plus
CG17145-PB 334 CG17145-PB 20..199 153..342 172 25.3 Plus
CG17145-PA 334 CG17145-PA 20..199 153..342 172 25.3 Plus
CG7290-PB 419 CG7290-PB 17..271 89..336 172 21.9 Plus
CG7290-PA 419 CG7290-PA 17..271 89..336 172 21.9 Plus
CG43896-PB 1324 CG43896-PB 42..198 177..337 169 26.8 Plus
CG43896-PD 2113 CG43896-PD 42..198 177..337 169 26.8 Plus
CG43896-PC 2113 CG43896-PC 42..198 177..337 169 26.8 Plus
CG31077-PB 988 CG31077-PB 206..480 49..346 163 21.7 Plus
CG43896-PD 2113 CG43896-PD 1632..1939 49..336 157 21.7 Plus
CG43896-PC 2113 CG43896-PC 1632..1939 49..336 157 21.7 Plus
CG10725-PB 269 CG10725-PB 15..267 88..342 157 23.7 Plus
CG43896-PB 1324 CG43896-PB 349..643 49..339 154 21.9 Plus
CG43896-PD 2113 CG43896-PD 349..643 49..339 154 21.9 Plus
CG43896-PC 2113 CG43896-PC 349..643 49..339 154 21.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13577-PA 353 GI13577-PA 22..340 31..347 904 53.3 Plus
Dmoj\GI14568-PA 335 GI14568-PA 31..335 41..346 487 34.2 Plus
Dmoj\GI11529-PA 334 GI11529-PA 9..329 19..346 467 33.4 Plus
Dmoj\GI11528-PA 316 GI11528-PA 1..296 53..347 330 30.8 Plus
Dmoj\GI13766-PA 360 GI13766-PA 31..360 39..348 242 24.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25071-PA 337 GL25071-PA 1..337 10..348 958 56.7 Plus
Dper\GL25120-PA 338 GL25120-PA 32..330 42..346 504 36.9 Plus
Dper\GL25119-PA 336 GL25119-PA 1..336 10..346 497 33.2 Plus
Dper\GL25118-PA 371 GL25118-PA 26..329 43..346 310 29.7 Plus
Dper\GL25049-PA 401 GL25049-PA 74..397 39..347 242 26.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19200-PA 337 GA19200-PA 1..337 10..348 959 57 Plus
Dpse\GA23689-PA 338 GA23689-PA 32..330 42..346 505 36.9 Plus
Dpse\GA14346-PA 336 GA14346-PA 1..336 10..346 495 33.2 Plus
Dpse\GA20015-PA 369 GA20015-PA 26..329 43..346 309 30.1 Plus
Dpse\GA20035-PA 394 GA20035-PA 67..390 39..347 237 26.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24691-PA 340 GM24691-PA 1..340 10..348 1681 92.9 Plus
Dsec\GM22260-PA 341 GM22260-PA 34..341 41..348 502 36.5 Plus
Dsec\GM22261-PA 338 GM22261-PA 1..333 10..346 452 33.4 Plus
Dsec\GM22259-PA 360 GM22259-PA 6..331 17..346 363 31.1 Plus
Dsec\GM22239-PA 359 GM22239-PA 31..358 42..347 220 26.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12761-PA 340 GD12761-PA 1..340 10..348 1693 93.5 Plus
Dsim\GD14859-PA 334 GD14859-PA 6..334 18..348 500 34.8 Plus
Dsim\GD14860-PA 338 GD14860-PA 1..333 10..346 448 34 Plus
Dsim\GD14858-PA 358 GD14858-PA 6..331 17..346 338 31.1 Plus
Dsim\GD12210-PA 359 GD12210-PA 5..358 16..347 228 26.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13911-PA 355 GJ13911-PA 23..343 30..348 871 50.2 Plus
Dvir\GJ11548-PA 334 GJ11548-PA 9..329 19..346 494 35.9 Plus
Dvir\GJ17080-PA 329 GJ17080-PA 25..329 41..346 482 33.6 Plus
Dvir\GJ11547-PA 349 GJ11547-PA 32..337 43..347 345 30.7 Plus
Dvir\GJ13756-PA 477 GJ13756-PA 147..477 40..348 286 27.2 Plus
Dvir\GJ13756-PA 477 GJ13756-PA 4..311 8..315 171 23 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13618-PA 345 GK13618-PA 1..342 10..348 946 52.5 Plus
Dwil\GK16941-PA 323 GK16941-PA 4..323 28..346 543 36.8 Plus
Dwil\GK16942-PA 338 GK16942-PA 1..334 10..346 479 34.4 Plus
Dwil\GK16940-PA 338 GK16940-PA 1..296 53..346 282 29.7 Plus
Dwil\GK17243-PA 721 GK17243-PA 366..721 17..348 255 25.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20161-PA 323 GE20161-PA 1..323 27..348 1416 84.5 Plus
Dyak\GE19649-PA 334 GE19649-PA 27..334 41..348 467 34.8 Plus
Dyak\GE19650-PA 336 GE19650-PA 29..331 41..346 440 33.5 Plus
Dyak\GE19648-PA 358 GE19648-PA 6..331 17..346 352 31.1 Plus
Dyak\GE23066-PA 358 GE23066-PA 6..331 17..346 352 31.1 Plus