Clone LP13860 Report

Search the DGRC for LP13860

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:138
Well:60
Vector:pOT2
Associated Gene/TranscriptRpi-RB
Protein status:LP13860.pep: gold
Sequenced Size:1070

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30410 2008-04-29 Release 5.5 accounting
CG30410 2008-04-29 Picked prior to 5.5
CG30410 2008-08-15 Release 5.9 accounting
CG30410 2008-12-18 5.12 accounting

Clone Sequence Records

LP13860.complete Sequence

1070 bp assembled on 2007-11-15

GenBank Submission: BT031281

> LP13860.complete
CGGCTTGATCTCTGTGACATTGAAGTTGCGATTGAAAGCAAGCCTGTTAA
CCACATGTTATCTGGGTTTTTGCGACGAGGCGTCCAAAGAGCACGGTTCA
CCTTCACCCAGCAACTCGGCGAAGATCTTTTGAGCGGCGCAGCGGCAACA
CTCCACACCCAGATACGCATGATGGATGACATTGCGCTGGACGCGGCCAA
GAAGACGGCGGCCCGCACGGCGGTGGACCAGTGGGTGACTGAGGATACGA
AGATTCTGGGGATTGGCAGCGGATCGACGGTGGTGTACGCCGTGCAGCGG
ATCGCGGAGCGCGTGTGGAAGGAGGGCGAGCTGACGGACCTCATCTGCGT
GCCCTCGTCCTACCAGGCGCGCCATCTGATACTCGACTACAACCTTAACC
TGGGCGATCTGGACAGGAATCCCAACATAGACGTGGCCATCGACGGGGCC
GACGAGGTCGATCGCCATATGGTGCTGATCAAGGGCGGCGGCGGCTGCTT
GCTGCAGGAGAAGGTGGTGGCCTCCTGCGCCAAGCACTTCATCGTGGTGG
CCGACTACACAAAGAACTCCATCCGCCTGGGCGAGCAGTGGTGCCGCGGC
GTGCCCATCGAGGTGGCGCCCATGGCGTACGTGCCCATCAAGCTGCACAT
CGAGGCGCTTTTCGGCGGCGAGGCCTCGTTGCGTATGGCCAAGGTGAAGG
CGGGACCCATTGTCACGGACAATGGCAACTTCCTCCTGGACTGGAAGTTC
ATCGCCAACAGGGAGTACGACTGGGACGAGGTCAACCGCGCCATCACCCT
CATCCCGGGCGTCCTGGAGACGGGCCTGTTCGTGAACATGGCCCACAAAT
GCTACTACGGCATGGCCAATGGCTCGGTCAAGGTCCAGAACAAGTAGTTC
TTGGGCGGAGTTGGGGGAGCGCTTTTTGCATTTATGTTTCACCAAGTTGT
TCCTTAAATTTTAGGTTTGCCATTTGTAATGGATTTAAATACATATTGAG
TTCTTAGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

LP13860.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG30410-RB 1010 CG30410-RB 1..1010 1..1010 5050 100 Plus
CG30409.a 1255 CG30409.a 761..1255 1..495 2475 100 Plus
CG30409-RA 899 CG30409-RA 761..899 1..139 695 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19241497..19242506 1..1010 5050 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:56:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23355183..23356198 1..1016 5065 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23356382..23357397 1..1016 5065 99.9 Plus
Blast to na_te.dros performed on 2019-03-15 15:11:34 has no hits.

LP13860.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:12:18 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19241497..19242506 1..1010 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:42:32 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
CG30410-RA 1..843 55..897 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:05:42 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
CG30410-RB 1..726 172..897 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:06:38 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
Rpi-RC 1..726 172..897 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:52:00 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
CG30410-RA 1..843 55..897 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:30:55 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
Rpi-RC 1..726 172..897 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:00:05 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
CG30410-RA 1..964 47..1010 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:05:42 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
CG30410-RB 1..1010 1..1010 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:06:38 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
Rpi-RC 1..1010 1..1010 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:52:00 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
CG30410-RA 1..964 47..1010 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:30:55 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
Rpi-RC 1..1010 1..1010 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:12:18 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23355183..23356192 1..1010 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:12:18 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23355183..23356192 1..1010 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:12:18 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23355183..23356192 1..1010 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:06:38 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19242706..19243715 1..1010 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:57:54 Download gff for LP13860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23356400..23357409 1..1010 100   Plus

LP13860.hyp Sequence

Translation from 0 to 896

> LP13860.hyp
RLDLCDIEVAIESKPVNHMLSGFLRRGVQRARFTFTQQLGEDLLSGAAAT
LHTQIRMMDDIALDAAKKTAARTAVDQWVTEDTKILGIGSGSTVVYAVQR
IAERVWKEGELTDLICVPSSYQARHLILDYNLNLGDLDRNPNIDVAIDGA
DEVDRHMVLIKGGGGCLLQEKVVASCAKHFIVVADYTKNSIRLGEQWCRG
VPIEVAPMAYVPIKLHIEALFGGEASLRMAKVKAGPIVTDNGNFLLDWKF
IANREYDWDEVNRAITLIPGVLETGLFVNMAHKCYYGMANGSVKVQNK*

LP13860.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
Rpi-PB 241 CG30410-PB 1..241 58..298 1260 100 Plus
Rpi-PC 241 CG30410-PC 1..241 58..298 1260 100 Plus

LP13860.pep Sequence

Translation from 54 to 896

> LP13860.pep
MLSGFLRRGVQRARFTFTQQLGEDLLSGAAATLHTQIRMMDDIALDAAKK
TAARTAVDQWVTEDTKILGIGSGSTVVYAVQRIAERVWKEGELTDLICVP
SSYQARHLILDYNLNLGDLDRNPNIDVAIDGADEVDRHMVLIKGGGGCLL
QEKVVASCAKHFIVVADYTKNSIRLGEQWCRGVPIEVAPMAYVPIKLHIE
ALFGGEASLRMAKVKAGPIVTDNGNFLLDWKFIANREYDWDEVNRAITLI
PGVLETGLFVNMAHKCYYGMANGSVKVQNK*

LP13860.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13575-PA 241 GF13575-PA 1..241 40..280 1236 95 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22843-PA 241 GG22843-PA 1..241 40..280 1253 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22734-PA 242 GH22734-PA 1..242 39..280 996 78.9 Plus
Dgri\GH13924-PA 242 GH13924-PA 1..242 39..280 996 78.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Rpi-PB 241 CG30410-PB 1..241 40..280 1260 100 Plus
Rpi-PC 241 CG30410-PC 1..241 40..280 1260 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18518-PA 242 GI18518-PA 1..242 39..280 1035 77.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10793-PA 242 GL10793-PA 1..242 39..280 1114 84.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24491-PA 242 GA24491-PA 1..242 39..280 1114 84.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16000-PA 280 GM16000-PA 1..280 1..280 1478 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11753-PA 280 GD11753-PA 1..280 1..280 1474 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21382-PA 242 GJ21382-PA 19..242 57..280 964 77.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19561-PA 245 GK19561-PA 1..241 39..278 1035 77.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14279-PA 241 GE14279-PA 1..241 40..280 1267 98.8 Plus