Clone LP14856 Report

Search the DGRC for LP14856

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:148
Well:56
Vector:pOT2
Associated Gene/TranscriptCG12481-RB
Protein status:LP14856.pep: gold
Sequenced Size:607

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12481 2003-01-01 Sim4 clustering to Release 3
CG12481 2004-01-13 Blastp of sequenced clone
CG12481 2008-04-29 Release 5.5 accounting
CG12481 2008-08-15 Release 5.9 accounting
CG12481 2008-12-18 5.12 accounting

Clone Sequence Records

LP14856.complete Sequence

607 bp (607 high quality bases) assembled on 2004-01-13

GenBank Submission: BT011373

> LP14856.complete
TTCGCAGCAGGAATCGGATTTCAGTCATGTGGACCAAATCAAGTGTTGTC
ATCGTTGCAATGGCGCTGTTAGCTTCAACTGGCGCCCAACCGGTGAGCCA
GACGGAAATGGAACCGATGCTCATCAATGTGACCACAAGCAGACCCAAGC
TGGTCATTGAGGAGATGGAACCGATGCGTTATCACTTCGTCACCGAGCAT
AGACCCACTTCGTTGGGCCAGAACTATTACATCAAACCGGGTCAGCCGGT
GGGCAGTATTACCCTGGACTCGGATACCCTGCAGGTGCGATACGATCAGG
ATGACGGGAAACCGGTGGCCAGCAAGCACAACATCCTGTTCGTGGCCTAC
GCCAAGGATCTGGCCCAAAAGTCCAGACAGCGGAAGTGAAAAATATGCTT
CAATTGTGCTGCGATGATATTTGAAATTTAAGAAAGATATAGAATCAACA
TATCTTGACAAATTGAAACCACAAGATACGTAGTGATTTAAATCTTAAGA
TACCTTAAGATACATATGTCTTGAGCTTCACTAGTTATACATTTTCACGG
AACATAAATAAAATAATATAGCACATTTTCTTAAATACCAAAAAAAAAAA
AAAAAAA

LP14856.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-RB 589 CG12481-RB 1..589 1..589 2945 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14077787..14078375 1..589 2840 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:56:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14187253..14187849 1..597 2970 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14195351..14195947 1..597 2970 99.8 Plus
Blast to na_te.dros performed 2019-03-16 20:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT2 2775 Dbuz\BuT2 BUT2 2775bp 135..224 514..427 121 64.1 Minus

LP14856.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:52:54 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14077787..14078375 1..589 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:42:45 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 1..363 27..389 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:42:40 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 1..363 27..389 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:29:28 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 1..363 27..389 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:31:30 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 1..363 27..389 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:18 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 1..363 27..389 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:52:27 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 1..589 1..589 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:42:40 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 1..589 1..589 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:28 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 1..589 1..589 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:31:30 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 1..589 1..589 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:18 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 1..589 1..589 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:52:54 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
X 14187253..14187841 1..589 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:52:54 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
X 14187253..14187841 1..589 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:52:54 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
X 14187253..14187841 1..589 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:28 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14081286..14081874 1..589 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:04:03 Download gff for LP14856.complete
Subject Subject Range Query Range Percent Splice Strand
X 14195351..14195939 1..589 100   Plus

LP14856.hyp Sequence

Translation from 2 to 388

> LP14856.hyp
RSRNRISVMWTKSSVVIVAMALLASTGAQPVSQTEMEPMLINVTTSRPKL
VIEEMEPMRYHFVTEHRPTSLGQNYYIKPGQPVGSITLDSDTLQVRYDQD
DGKPVASKHNILFVAYAKDLAQKSRQRK*

LP14856.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-PB 120 CG12481-PB 1..120 9..128 613 100 Plus

LP14856.pep Sequence

Translation from 26 to 388

> LP14856.pep
MWTKSSVVIVAMALLASTGAQPVSQTEMEPMLINVTTSRPKLVIEEMEPM
RYHFVTEHRPTSLGQNYYIKPGQPVGSITLDSDTLQVRYDQDDGKPVASK
HNILFVAYAKDLAQKSRQRK*

LP14856.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19241-PA 118 GF19241-PA 6..118 9..117 379 64.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17829-PA 118 GG17829-PA 1..117 1..117 562 88.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17825-PA 98 GH17825-PA 5..90 35..116 205 48.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-PB 120 CG12481-PB 1..120 1..120 613 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21741-PA 106 GI21741-PA 24..101 36..111 249 58.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14841-PA 124 GL14841-PA 3..124 5..120 308 52.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11654-PA 124 GA11654-PA 7..124 9..120 300 52.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17659-PA 120 GM17659-PA 1..120 1..120 608 95 Plus
Dsec\GM19964-PA 120 GM19964-PA 1..120 1..120 608 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17158-PA 120 GD17158-PA 1..120 1..120 590 91.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19122-PA 92 GJ19122-PA 3..81 35..111 205 48.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18862-PA 123 GK18862-PA 44..113 41..109 219 60 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17122-PA 121 GE17122-PA 1..121 1..120 540 84.3 Plus