Clone LP15633 Report

Search the DGRC for LP15633

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:156
Well:33
Vector:pOT2
Associated Gene/TranscriptSpn28Dc-RA
Protein status:LP15633.pep: gold
Sequenced Size:1856

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7219 2008-04-29 Release 5.5 accounting
CG7219 2008-04-29 Picked prior to 5.5
CG7219 2008-08-15 Release 5.9 accounting
CG7219 2008-12-18 5.12 accounting

Clone Sequence Records

LP15633.complete Sequence

1856 bp assembled on 2007-10-25

GenBank Submission: BT031146

> LP15633.complete
CTCGCACAGCCACATCGCGTTTGCCTCTAAAAAAAAAAAAAAAAATATAT
ATATATATATATATATATATAAAGTTCGTTCTGTGTGTTGCGTTCGAGAT
TAACAAAAAGAAAATTACAAAATGTGGCGCTTGCTTTTGGCACTTTTGCT
CGTGAGTTCGGTGTGCTGTGAATCGGAACTATTTCGTGATGACCTGAGGA
CCCCGGAAACGATGGCCTACATCAATGGACTGATGCAGCGGCGGCATCAG
ATGCAACAGGAGGCGCAGCAGCACATTCAGGCGATACCGCCTGCGGTGCC
CCTTCAATCGCCCGGCCTTGTGAACGGCCTTGGCAACCAGAATGACCCTG
CGTTGAATCGCATATCCGGCACTTCGGTGAAACCTTCCAACCTTCCGGCT
GCCTACTCCAACGGCTATGTGGATCTGGCCACCTCTGATCGGATTGCGAA
CAGTGTGCTGAACTTTGCCAACATTCTGGGCCAGCATTTGGCCAACGGTA
AAACCCAGATATACTCTCCCCTGAGCATTGTACACTCGCTGGCTCTGCTG
CTCCTGGGCGCCAAGGGTCGCAGTTACGAGGAGTTGTCCACGGTCTTCGA
TATTCCGGACACGTCCAGGCTGCACGAACAGTTCGGCCTGATGCTGCAGG
ATCTGCAACAGCCCACCAGGGAGGCGATCTCCGCAGGACGACCGCTGACC
GATTGGCGGGCGAGCAGCGCGATGAGATCCAATCGACGGGCCCAGCGACC
CGGTGCTCATGAGGTGCACCTGGCCAATGGACTGTTCACACAGACCGGCT
ACACACTCAATCCCGACTACAGACGGGTGATCGTCGAGGTCTACGCCTCG
GATCTGCAGATTCAGGATTTCGAGGGCAGTCCGGCGACAGCACGATACAA
TATCAATGCTTATGTGGCGCAGCACACAAAGAATCACATCGAGAACATCA
TCGCCAGCGATATTCCGCAGACCACCAGGATGATTCTGGCCAACGCATTG
TACTTTAAGGCATTCTGGGAAACGGACTTTATAGAGTCAGCCACACGTCC
GGATAACTTCTATCCGAATGGCGAGGGAACGGAGCCGGTGATGAGGGTGC
AGATGATGGCCACCGGTGGTGCATATCCGTATCACGAGGATCACGAGCTG
GGCTGCAAGATCATTGGACTGCCGTACAGGGGAAATCTGAGCACCATGTA
CATCATCCAGCCGTTTAAGTCGTCGGTGAGGGAGCTAATGGCACTGCAGA
AACGTCTGACGGCGGATAAGATCGAGAGCATGATCAGCCGAATGTACAGA
CGGGCCGCTCTGGTGGCATTCCCAAAGATGCATCTTACGGAGTCGGTGAA
CTTGAAGACAGTCATGCAGCGAATGGGGCTGGGCGGCATCTTTAGCGCGG
TGCAGAATGATCTCTCGCTCATCGCCACCAACGAGGCCACGAGGACGAAT
GCGCTGGGCGGCAACAGCCTGCAGAATCTGGAGGCACAGCGCAGAGCCGG
AACGGGTGGAGCACGTTCCGATCTGGTGGTGGATGACATTGTTCACAAAG
TGGACTTCACCGTCAACGAGCAGGGCACGGAGGCGGCGGCGTCTTCGGTC
ACATACCTCAAGAAATCCGGTCCCGATGTCCTCTTCCGCGGAGACACTCC
ATTCATGGTCCTTGTGCGCCACGATCCCACGAAACTGGTGCTCTTCTACG
GACTCATAAATGAGCCCCCGGCGGCCGCTTAGTTTCTAGGATCATAAGTT
ATTAAGCTTTAGCACCTAAGTTCGTTGACTTTATAGTTAGGAAACTAATA
AATCATTCACAATGATGAAAAATAAATTAAAACGTAAAAAAAAAAAAAAA
AAAAAA

LP15633.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Spn28D-RA 1847 Spn28D-RA 1..1838 1..1838 9190 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8003568..8004583 1835..820 5080 100 Minus
chr2L 23010047 chr2L 8005452..8006273 822..1 4110 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:57:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8004545..8005563 1838..820 5095 100 Minus
2L 23513712 2L 8006432..8007253 822..1 4110 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8004545..8005563 1838..820 5095 100 Minus
2L 23513712 2L 8006432..8007253 822..1 4110 100 Minus
Blast to na_te.dros performed 2019-03-15 23:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 4624..4684 886..947 127 69.4 Plus

LP15633.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:15:24 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8003568..8004580 823..1835 100 <- Minus
chr2L 8005452..8006273 1..822 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:42:56 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
CG7219-RA 1..1611 122..1732 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:05:44 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
Spn28D-RA 1..1611 122..1732 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:33:52 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
Spn28Dc-RA 1..1611 122..1732 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:52:01 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
CG7219-RA 1..1611 122..1732 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:17 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
Spn28Dc-RA 1..1611 122..1732 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:00:08 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
CG7219-RA 1..1611 122..1732 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:05:43 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
Spn28D-RA 1..1835 1..1835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:33:52 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
Spn28Dc-RA 1..1792 44..1835 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:52:01 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
CG7219-RA 1..1611 122..1732 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:17 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
Spn28Dc-RA 1..1792 44..1835 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:15:24 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8004548..8005560 823..1835 100 <- Minus
2L 8006432..8007253 1..822 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:15:24 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8004548..8005560 823..1835 100 <- Minus
2L 8006432..8007253 1..822 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:15:24 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8004548..8005560 823..1835 100 <- Minus
2L 8006432..8007253 1..822 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:33:52 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8004548..8005560 823..1835 100 <- Minus
arm_2L 8006432..8007253 1..822 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:57:55 Download gff for LP15633.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8004548..8005560 823..1835 100 <- Minus
2L 8006432..8007253 1..822 100   Minus

LP15633.pep Sequence

Translation from 121 to 1731

> LP15633.pep
MWRLLLALLLVSSVCCESELFRDDLRTPETMAYINGLMQRRHQMQQEAQQ
HIQAIPPAVPLQSPGLVNGLGNQNDPALNRISGTSVKPSNLPAAYSNGYV
DLATSDRIANSVLNFANILGQHLANGKTQIYSPLSIVHSLALLLLGAKGR
SYEELSTVFDIPDTSRLHEQFGLMLQDLQQPTREAISAGRPLTDWRASSA
MRSNRRAQRPGAHEVHLANGLFTQTGYTLNPDYRRVIVEVYASDLQIQDF
EGSPATARYNINAYVAQHTKNHIENIIASDIPQTTRMILANALYFKAFWE
TDFIESATRPDNFYPNGEGTEPVMRVQMMATGGAYPYHEDHELGCKIIGL
PYRGNLSTMYIIQPFKSSVRELMALQKRLTADKIESMISRMYRRAALVAF
PKMHLTESVNLKTVMQRMGLGGIFSAVQNDLSLIATNEATRTNALGGNSL
QNLEAQRRAGTGGARSDLVVDDIVHKVDFTVNEQGTEAAASSVTYLKKSG
PDVLFRGDTPFMVLVRHDPTKLVLFYGLINEPPAAA*

LP15633.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15333-PA 553 GF15333-PA 1..544 1..534 1971 69.1 Plus
Dana\GF11691-PA 374 GF11691-PA 15..368 115..527 302 25.8 Plus
Dana\GF11763-PA 376 GF11763-PA 19..334 117..492 282 25.9 Plus
Dana\GF17157-PA 426 GF17157-PA 61..422 130..532 266 24.1 Plus
Dana\GF19634-PA 394 GF19634-PA 7..324 80..439 257 25.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23487-PA 551 GG23487-PA 1..551 1..536 2351 84.1 Plus
Dere\GG21843-PA 374 GG21843-PA 15..368 115..527 288 24.7 Plus
Dere\GG10790-PA 424 GG10790-PA 44..406 107..527 286 26.2 Plus
Dere\GG20858-PA 427 GG20858-PA 42..422 110..532 285 23 Plus
Dere\GG23230-PA 372 GG23230-PA 35..372 130..532 274 24.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11465-PA 555 GH11465-PA 19..548 24..536 1315 52.1 Plus
Dgri\GH20251-PA 377 GH20251-PA 33..376 130..534 285 24.9 Plus
Dgri\GH22013-PA 401 GH22013-PA 25..379 120..532 262 25.1 Plus
Dgri\GH13574-PA 451 GH13574-PA 102..450 130..532 258 25.5 Plus
Dgri\GH19862-PA 382 GH19862-PA 37..337 130..492 238 25.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
Spn28Dc-PA 536 CG7219-PA 1..536 1..536 2747 100 Plus
Spn42Da-PG 379 CG9453-PG 30..378 126..531 297 26.8 Plus
Spn42Da-PD 411 CG9453-PD 62..410 126..531 297 26.8 Plus
Spn42Da-PA 392 CG9453-PA 30..376 126..529 294 25.8 Plus
Spn42Da-PB 424 CG9453-PB 62..408 126..529 294 25.8 Plus
Spn42Da-PL 379 CG9453-PL 30..378 126..531 290 26.1 Plus
Spn42Da-PK 379 CG9453-PK 30..378 126..531 290 26.1 Plus
Spn42Da-PH 379 CG9453-PH 30..378 126..531 290 26.1 Plus
Spn42Da-PF 411 CG9453-PF 62..410 126..531 290 26.1 Plus
Spn42Da-PE 411 CG9453-PE 62..410 126..531 290 26.1 Plus
Spn42Da-PJ 374 CG9453-PJ 30..335 126..493 286 26.3 Plus
Spn42Da-PI 406 CG9453-PI 62..367 126..493 286 26.3 Plus
Spn42Dd-PB 372 CG9456-PB 35..372 130..532 273 24.8 Plus
Spn55B-PA 374 CG10913-PA 15..368 115..527 270 24.3 Plus
Spn28F-PA 375 CG8137-PA 35..373 130..532 262 23.5 Plus
Spn42De-PB 386 CG9460-PB 17..380 115..524 258 24.7 Plus
Spn42De-PA 404 CG9460-PA 35..398 115..524 258 24.7 Plus
Spn88Ea-PB 427 CG18525-PB 42..422 110..532 258 23.3 Plus
Spn88Ea-PA 427 CG18525-PA 42..422 110..532 258 23.3 Plus
Spn28B-PB 378 CG6717-PB 20..376 114..532 232 24 Plus
Spn28B-PA 378 CG6717-PA 20..376 114..532 232 24 Plus
Spn42Dc-PB 403 CG9455-PB 35..384 130..536 231 23.8 Plus
Spn42Dc-PA 403 CG9455-PA 35..384 130..536 231 23.8 Plus
Spn27A-PB 447 CG11331-PB 116..443 182..532 230 24 Plus
Spn27A-PA 447 CG11331-PA 116..443 182..532 230 24 Plus
Spn47C-PC 382 CG7722-PC 38..382 132..532 221 21.9 Plus
Spn47C-PB 382 CG7722-PB 38..382 132..532 221 21.9 Plus
Spn47C-PA 382 CG7722-PA 38..382 132..532 221 21.9 Plus
Spn43Aa-PA 390 CG12172-PA 30..376 115..516 213 26.2 Plus
Spn28Da-PB 384 CG31902-PB 35..372 130..532 196 20.8 Plus
Spn77Ba-PC 450 CG6680-PC 156..450 214..535 165 22.7 Plus
Spn77Ba-PB 450 CG6680-PB 156..450 214..535 165 22.7 Plus
Spn77Ba-PA 450 CG6680-PA 156..450 214..535 165 22.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16895-PA 548 GI16895-PA 22..540 19..535 1365 55.6 Plus
Dmoj\GI19420-PA 376 GI19420-PA 15..376 115..535 283 25.2 Plus
Dmoj\GI19810-PA 401 GI19810-PA 37..379 130..529 267 26.5 Plus
Dmoj\GI23459-PA 419 GI23459-PA 61..415 130..532 265 25 Plus
Dmoj\GI24139-PA 434 GI24139-PA 152..433 221..532 257 26.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18507-PA 563 GL18507-PA 1..562 1..535 1818 65.7 Plus
Dper\GL10534-PA 376 GL10534-PA 15..376 115..534 290 25.3 Plus
Dper\GL21686-PA 422 GL21686-PA 62..417 130..532 268 24.1 Plus
Dper\GL11125-PA 404 GL11125-PA 22..380 117..532 256 22.6 Plus
Dper\GL10965-PA 393 GL10965-PA 27..379 123..532 252 25.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20188-PA 563 GA20188-PA 1..562 1..535 1822 65.5 Plus
Dpse\GA10637-PA 376 GA10637-PA 15..376 115..534 292 25.3 Plus
Dpse\GA14973-PA 424 GA14973-PA 62..419 130..532 265 25.5 Plus
Dpse\GA21800-PA 404 GA21800-PA 22..380 117..532 259 22.9 Plus
Dpse\GA24617-PA 375 GA24617-PA 25..375 118..532 248 24.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13216-PA 535 GM13216-PA 1..535 1..536 2518 92.2 Plus
Dsec\GM21844-PA 374 GM21844-PA 15..368 115..527 296 25.3 Plus
Dsec\GM20841-PA 347 GM20841-PA 45..329 215..527 279 27.2 Plus
Dsec\GM25802-PA 427 GM25802-PA 42..422 110..532 272 23.5 Plus
Dsec\GM20904-PA 372 GM20904-PA 35..372 130..532 263 24.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22450-PA 255 GD22450-PA 12..255 293..536 1271 96.3 Plus
Dsim\GD22449-PA 269 GD22449-PA 1..245 1..246 985 86.2 Plus
Dsim\GD10292-PA 424 GD10292-PA 62..408 126..529 298 25.8 Plus
Dsim\GD11338-PA 374 GD11338-PA 15..368 115..527 296 25.3 Plus
Dsim\GD20378-PA 427 GD20378-PA 42..422 110..532 278 24.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17206-PA 551 GJ17206-PA 9..540 4..533 1372 53.9 Plus
Dvir\GJ22484-PA 376 GJ22484-PA 14..376 114..534 281 25.8 Plus
Dvir\GJ18486-PA 377 GJ18486-PA 37..373 130..527 263 26.7 Plus
Dvir\GJ10214-PA 391 GJ10214-PA 33..387 130..532 257 24.3 Plus
Dvir\GJ17545-PA 407 GJ17545-PA 31..379 126..532 251 25.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15129-PA 551 GK15129-PA 83..551 94..536 1505 60.8 Plus
Dwil\GK20760-PA 433 GK20760-PA 71..420 130..536 350 28.3 Plus
Dwil\GK20759-PA 401 GK20759-PA 57..399 130..534 327 26.7 Plus
Dwil\GK22245-PA 374 GK22245-PA 15..374 115..532 300 25.8 Plus
Dwil\GK20758-PA 404 GK20758-PA 57..404 130..536 300 27.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11241-PA 568 GE11241-PA 1..568 1..536 2379 81.3 Plus
Dyak\GE11922-PA 374 GE11922-PA 15..368 115..527 297 25.1 Plus
Dyak\GE24388-PA 392 GE24388-PA 12..374 107..527 288 25.5 Plus
Dyak\GE26407-PA 427 GE26407-PA 42..422 110..532 275 23.2 Plus
Dyak\GE19081-PA 374 GE19081-PA 35..374 130..532 268 24.3 Plus

LP15633.hyp Sequence

Translation from 121 to 1731

> LP15633.hyp
MWRLLLALLLVSSVCCESELFRDDLRTPETMAYINGLMQRRHQMQQEAQQ
HIQAIPPAVPLQSPGLVNGLGNQNDPALNRISGTSVKPSNLPAAYSNGYV
DLATSDRIANSVLNFANILGQHLANGKTQIYSPLSIVHSLALLLLGAKGR
SYEELSTVFDIPDTSRLHEQFGLMLQDLQQPTREAISAGRPLTDWRASSA
MRSNRRAQRPGAHEVHLANGLFTQTGYTLNPDYRRVIVEVYASDLQIQDF
EGSPATARYNINAYVAQHTKNHIENIIASDIPQTTRMILANALYFKAFWE
TDFIESATRPDNFYPNGEGTEPVMRVQMMATGGAYPYHEDHELGCKIIGL
PYRGNLSTMYIIQPFKSSVRELMALQKRLTADKIESMISRMYRRAALVAF
PKMHLTESVNLKTVMQRMGLGGIFSAVQNDLSLIATNEATRTNALGGNSL
QNLEAQRRAGTGGARSDLVVDDIVHKVDFTVNEQGTEAAASSVTYLKKSG
PDVLFRGDTPFMVLVRHDPTKLVLFYGLINEPPAAA*

LP15633.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Spn28Dc-PA 536 CG7219-PA 1..536 1..536 2747 100 Plus
Spn42Da-PG 379 CG9453-PG 30..378 126..531 297 26.8 Plus
Spn42Da-PD 411 CG9453-PD 62..410 126..531 297 26.8 Plus
Spn42Da-PA 392 CG9453-PA 30..376 126..529 294 25.8 Plus
Spn42Da-PB 424 CG9453-PB 62..408 126..529 294 25.8 Plus