LP15878.complete Sequence
3402 bp (3402 high quality bases) assembled on 2005-03-03
GenBank Submission: BT021353.1
> LP15878.complete
AGCAGCATCCGCCAGCAGATTCGCAAGCCAGTTCGCTGCCAGAAGCCAAA
ACCCAAGGCAAAGCCAGCCGAACCGGGCCAATTCTAGGGGAACGCGTGTG
TGTGAAGAGCGGCACCACAATAAGAAAATCATAATGATGATGGATTAACT
GATCCCAGTTGTTGTTCATGTTGTGCGAGTGAGACAGCGCGAGTGTGGAA
GGAGCACCGGAAGTGGCAGCAGTAGCGGCATTAGCAGCAGCAACAGCACC
GCAGCAACATTGCAGCAGCAGCAGCAGCAGCAACAGCAAAGGCGAAATCA
GCAAATACAAACGAATCATCTAGCACTACCACAAAACGCAATATAATTTC
AAACCTGCTGGCTTCGCATCCACCCAAAACGTGTCCTTCCATCCCAAAAG
ATCCAATAAATCCGGCAAGCTGGCGTCGTTTAAGCAGAAGAATAACAATA
ACACCATTAGCAATTACAACAACAATATAATGTGGAGTAGTACTATATCG
CCAACCAACTCTAAGAAACTGTTGATCGGAAGCACACGAAGCGTTGATTA
TGTCGGTGATAGTGCGAGGACAGCAGCAGGCAATATCAAAACAGGAGCAG
CAGCAGCCGCAGGAGCCAAAGGATCAAAATCCAAAGCCACAGCCACAGCC
CCCACAACCAAGATCTCAATCGAAATGGAGCTCCACATACAGAACAAGTG
CATCTCGGCATAGCGCATCACTCTGGAGGGTGGTGCGGAGCCGCCATGGC
TGCAGGGCCCCCTTAAAGCCGCGTTTTTGGGGGCTACTGGGGTCGGCAAA
ACAAGCATACTACAGCAATTTTTCTACCATGACTTTCCCAGGACTCATCA
GACGACAACTCATCGCAAGATCTACAAAAACTGTCTGGTCTGCGACACCT
GCATACGTGAGCTGATGGTACTGGACGTTCCTCCCCAGAAGCGATTTCCG
GCTGACAACTTCGCCGAGTGGAACAACGGACATCCGCTGGGGCTGCGAAC
GGTGCACGCCTATGTCTTGGTCTACGACATGGGCAACTTGGAGACCTTTC
AATACTGCCGCTCGATGAGAGATCAGATCTTGGACAGTTTCAGTCATCGT
GATTTTAGCATAATTGTGGTCGGCAATAAATTTGACAATGTGACTGAGGC
GCAGGCCAACTCGCAGGAGCTCAAGGACATTTCCACGCTGGTGCGCAAAC
ATTGGCGCTGCGGCTACGTCGAGTGCTCGGCGCAATATAACTACAAAATC
GGAGACGTTTTCCGCGAGCTGATGGGCTGCACCAGCGCTGTAGGAGGAGG
CGGCGCCGGCGGAGGTGGAGGCGTGGCCGGGGTCGGTGGCCTGGTTGGCA
CTGAGTACTCACAATCAACTAGGAATAAAGGACGCTGTACAATACTGTAG
CAAGAGTTGCATAAGTTTTATAAGCAAACGCGCTGATCTGGCGCATTACA
TCCGAGTGAATTCATCGCAAGACGGTGGCTGCAGCTGGGACACGGTGGCG
TATACGCAATCTCCAGGGAGGAAGCACAAAGACGACATTGTTGCCCCTTG
CCAACGCTTGCCCTCTGATGCATATTTTACCATATATTTTAGTGGCCACA
CTCCGCACATCTTCTCCTTTGTTTGCCATTATTACAACATTTTGTGTTCC
CGGCTGTTTCCATGGACGCTTTTGCTCTGCTTATTTAAATGGCAGTGGCA
ATGGCAATGGCCATGGCCCCGCCGCACACAGGACACGTTTGGCCAGCACC
CAGATCCCGATCCTGACGACGGCTTTTGTGCGTCCGCATTTGCAATTCAA
TTCATATTTCGCTGGCAGGAAGTGCAATGGCCATGAATATGCAGAGATAT
CCGCAAAGTGCAGCCACAATGGCCGGCGAAAGTTCCCTTTGCGACCATCA
TCATTATCGTTGTGGCTATTATTTGTGTCGTGGATCGTAAATAGGCAATT
AATCCCACCATAATTTACAATACGTTTTATGTACGAACGAATAACCTTGT
TATCAAACAAACTAAAGTCGGTTAGGAACTAAAGTAAAGAACTAAGCTAT
ACACACATATACTTAAACATATATGTATACATTAACGTTGTGATCATTTC
AAGAATTAGTTCTTAAGGCACTCCGACCCAGAACGTCGGCCAATGTCAAG
TGAAGTCAAGTCAAGTCAAGTCAAGTATCCGTATCCGTATCCGGAACTGG
AATACCAGAAATACTTAGCTATAGGACACAGTACGAGTAAGAGCAATTTA
ATAAATAGTCGTAAGTGTTTGGAGAGCGGTCGAAGGCGGTAAAATCAAAC
AGTTACAATCATGCCATGAAAATCCTCAACAGGCCAGCTCCATAATATCC
ATAAATATTCGCTCCGCAATTTGCTTGAAATGAATAACCACCCGAATCTG
GCATCAAGTTATTGCAATATAACCTAAACCACAGATCAATCATTGACTTT
ACCCATGTTTCGCCATCGAGGAGCCGTGATCCAGAAGCCTTAAGAACCCA
GAAGCAAATGATGCATAGAACACCTTAGTGTAAAGTAAGATAACAACTTG
ATCGAAGCGCACAAAAAACGAGCATTGTGTTACCATCGCAAACTCGAAAT
TGTCAGAGCCCAGATTGAAGAAAGGTCGAAGGCCACATCTGCGTACAGTA
GTATCGAAATCGCCTATCTATTAGGTAGGTGTGGTTCTATATATCCGTAC
TGGCGATCGTCAAGTTAATTAGGTTCTGAGCAGATCTACGAAACACGTAC
ATACCATTCTGATCTCTTTCTTTACCTCAAGAAGACAACTTAAACTACTC
AAAAGAAAAGCAATCAAGGCTGACTTTGTACATAGGGATTTCAATGAAAG
AACTTGGCAAAAAGCTACGGGAACCGACTTTTACAGCAATACATATAAAT
AAGCTCTAACTGATATTCAAGATAGATACATAACTGGGCGCACTGCCACA
ATGGTTCCACTCCCAGTTGAGTGCTCGGCTAGGATTCTAGGAGTAGCTGA
GCCAGCAAGTATCTTGAAACAATTCGACGGCATTATTTTAAGGTTAACCA
ATGCAAATCGATAATAATACGAGGGTACTAGCCCATTATTGTTATACATA
TTATTATTAATATAGATTTCGCGGCTTTAAGATGGGTGGGGGTAAGGTTT
GAAAGTTTTTTGATGGAGAATATATACAAAAAGGGGCCTGTCAGGCAGTT
GTTTGCCACTCTTACAGAGAGTTATTTGAAAAAAGCCCTTTTTCAGATTT
TTAATTTCGCTTTAAGGTGAAAGATGTTTCCTTTCTTAAATTAAGAAAGA
ATTTCAAAAACGTTGCTGTAGCTTTTTAGTTTCGCTGCGATTAACTTTAG
AATTATACAGAATATTTTGAAATATTGAAAAACGAAAAAAAAAAAAAAAA
AA
LP15878.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14669-RA | 3384 | CG14669-RA | 1..3384 | 1..3384 | 16920 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 1281110..1283259 | 1235..3384 | 10750 | 100 | Plus |
chr3R | 27901430 | chr3R | 1262791..1263308 | 298..815 | 2590 | 100 | Plus |
chr3R | 27901430 | chr3R | 1242361..1242557 | 105..301 | 985 | 100 | Plus |
chr3R | 27901430 | chr3R | 1267782..1267907 | 813..938 | 630 | 100 | Plus |
chr3R | 27901430 | chr3R | 1280279..1280396 | 935..1052 | 590 | 100 | Plus |
chr3R | 27901430 | chr3R | 1280468..1280582 | 1053..1167 | 575 | 100 | Plus |
chr3R | 27901430 | chr3R | 1240212..1240318 | 1..107 | 535 | 100 | Plus |
chr3R | 27901430 | chr3R | 1280957..1281028 | 1163..1234 | 360 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:57:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5455451..5457618 | 1235..3402 | 10780 | 99.8 | Plus |
3R | 32079331 | 3R | 5437132..5437649 | 298..815 | 2590 | 100 | Plus |
3R | 32079331 | 3R | 5416702..5416898 | 105..301 | 985 | 100 | Plus |
3R | 32079331 | 3R | 5442123..5442248 | 813..938 | 630 | 100 | Plus |
3R | 32079331 | 3R | 5454620..5454737 | 935..1052 | 590 | 100 | Plus |
3R | 32079331 | 3R | 5454809..5454923 | 1053..1167 | 575 | 100 | Plus |
3R | 32079331 | 3R | 5414553..5414659 | 1..107 | 535 | 100 | Plus |
3R | 32079331 | 3R | 5455298..5455369 | 1163..1234 | 360 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 5196282..5198449 | 1235..3402 | 10780 | 99.8 | Plus |
3R | 31820162 | 3R | 5177963..5178480 | 298..815 | 2590 | 100 | Plus |
3R | 31820162 | 3R | 5157533..5157729 | 105..301 | 985 | 100 | Plus |
3R | 31820162 | 3R | 5182954..5183079 | 813..938 | 630 | 100 | Plus |
3R | 31820162 | 3R | 5195451..5195568 | 935..1052 | 590 | 100 | Plus |
3R | 31820162 | 3R | 5195640..5195754 | 1053..1167 | 575 | 100 | Plus |
3R | 31820162 | 3R | 5155384..5155490 | 1..107 | 535 | 100 | Plus |
3R | 31820162 | 3R | 5196129..5196200 | 1163..1234 | 360 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 18:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6919 | 200..322 | 261 | 70.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2412 | 570..658 | 183 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2258..2677 | 222..641 | 159 | 54.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6808..6954 | 570..723 | 148 | 61.5 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1161..1246 | 3032..3119 | 128 | 65.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1150 | 572..660 | 127 | 65.6 | Plus |
LP15878.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:49:29 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 1242364..1242471 | 108..215 | 100 | == | Plus |
chr3R | 1240212..1240318 | 1..107 | 100 | -> | Plus |
chr3R | 1262791..1263308 | 298..815 | 100 | -> | Plus |
chr3R | 1267785..1267907 | 816..938 | 100 | -> | Plus |
chr3R | 1280283..1280396 | 939..1052 | 100 | -> | Plus |
chr3R | 1280468..1280581 | 1053..1166 | 100 | -> | Plus |
chr3R | 1280961..1281028 | 1167..1234 | 100 | -> | Plus |
chr3R | 1281110..1283259 | 1235..3384 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:59:36 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14669-RA | 1..234 | 480..713 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:26:22 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14669-RA | 1..921 | 480..1400 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:32:37 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14669-RA | 1..921 | 480..1400 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:10:27 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14669-RA | 1..234 | 480..713 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:58 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14669-RA | 1..921 | 480..1400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:34 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14669-RA | 1..3384 | 1..3384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:26:22 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14669-RA | 1..3384 | 1..3384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:32:37 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14669-RA | 27..135 | 1..107 | 98 | -> | Plus |
CG14669-RA | 372..3648 | 108..3384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:10:27 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14669-RA | 1..3384 | 1..3384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:58 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14669-RA | 27..135 | 1..107 | 98 | -> | Plus |
CG14669-RA | 372..3648 | 108..3384 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:49:29 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5414553..5414659 | 1..107 | 100 | -> | Plus |
3R | 5416705..5416898 | 108..301 | 100 | -> | Plus |
3R | 5437136..5437649 | 302..815 | 100 | -> | Plus |
3R | 5442126..5442248 | 816..938 | 100 | -> | Plus |
3R | 5454624..5454737 | 939..1052 | 100 | -> | Plus |
3R | 5454809..5454922 | 1053..1166 | 100 | -> | Plus |
3R | 5455302..5455369 | 1167..1234 | 100 | -> | Plus |
3R | 5455451..5457600 | 1235..3384 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:49:29 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5414553..5414659 | 1..107 | 100 | -> | Plus |
3R | 5416705..5416898 | 108..301 | 100 | -> | Plus |
3R | 5437136..5437649 | 302..815 | 100 | -> | Plus |
3R | 5442126..5442248 | 816..938 | 100 | -> | Plus |
3R | 5454624..5454737 | 939..1052 | 100 | -> | Plus |
3R | 5454809..5454922 | 1053..1166 | 100 | -> | Plus |
3R | 5455302..5455369 | 1167..1234 | 100 | -> | Plus |
3R | 5455451..5457600 | 1235..3384 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:49:29 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5414553..5414659 | 1..107 | 100 | -> | Plus |
3R | 5416705..5416898 | 108..301 | 100 | -> | Plus |
3R | 5437136..5437649 | 302..815 | 100 | -> | Plus |
3R | 5442126..5442248 | 816..938 | 100 | -> | Plus |
3R | 5454624..5454737 | 939..1052 | 100 | -> | Plus |
3R | 5454809..5454922 | 1053..1166 | 100 | -> | Plus |
3R | 5455302..5455369 | 1167..1234 | 100 | -> | Plus |
3R | 5455451..5457600 | 1235..3384 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:32:37 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1240275..1240381 | 1..107 | 100 | -> | Plus |
arm_3R | 1242427..1242620 | 108..301 | 100 | -> | Plus |
arm_3R | 1262858..1263371 | 302..815 | 100 | -> | Plus |
arm_3R | 1267848..1267970 | 816..938 | 100 | -> | Plus |
arm_3R | 1280346..1280459 | 939..1052 | 100 | -> | Plus |
arm_3R | 1280531..1280644 | 1053..1166 | 100 | -> | Plus |
arm_3R | 1281024..1281091 | 1167..1234 | 100 | -> | Plus |
arm_3R | 1281173..1283322 | 1235..3384 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:46:56 Download gff for
LP15878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5177967..5178480 | 302..815 | 100 | -> | Plus |
3R | 5182957..5183079 | 816..938 | 100 | -> | Plus |
3R | 5195455..5195568 | 939..1052 | 100 | -> | Plus |
3R | 5195640..5195753 | 1053..1166 | 100 | -> | Plus |
3R | 5196133..5196200 | 1167..1234 | 100 | -> | Plus |
3R | 5196282..5198431 | 1235..3384 | 100 | | Plus |
3R | 5155384..5155490 | 1..107 | 100 | -> | Plus |
3R | 5157536..5157729 | 108..301 | 100 | -> | Plus |
LP15878.pep Sequence
Translation from 479 to 712
> LP15878.pep
MWSSTISPTNSKKLLIGSTRSVDYVGDSARTAAGNIKTGAAAAAGAKGSK
SKATATAPTTKISIEMELHIQNKCISA*
LP15878.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14669-PD | 77 | CG14669-PD | 1..77 | 1..77 | 379 | 100 | Plus |
CG14669-PC | 192 | CG14669-PC | 1..77 | 1..77 | 379 | 100 | Plus |
CG14669-PB | 306 | CG14669-PB | 1..77 | 1..77 | 379 | 100 | Plus |
CG14669-PA | 306 | CG14669-PA | 1..77 | 1..77 | 379 | 100 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA13161-PB | 324 | GA13161-PB | 1..94 | 1..77 | 242 | 69.1 | Plus |
LP15878.hyp Sequence
Translation from 914 to 1399
> LP15878.hyp
MVLDVPPQKRFPADNFAEWNNGHPLGLRTVHAYVLVYDMGNLETFQYCRS
MRDQILDSFSHRDFSIIVVGNKFDNVTEAQANSQELKDISTLVRKHWRCG
YVECSAQYNYKIGDVFRELMGCTSAVGGGGAGGGGGVAGVGGLVGTEYSQ
STRNKGRCTIL*
LP15878.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14669-PB | 306 | CG14669-PB | 146..306 | 1..161 | 866 | 100 | Plus |
CG14669-PA | 306 | CG14669-PA | 146..306 | 1..161 | 866 | 100 | Plus |
CG13375-PC | 277 | CG13375-PC | 70..181 | 2..120 | 157 | 32.5 | Plus |
CG13375-PB | 306 | CG13375-PB | 99..210 | 2..120 | 157 | 32.5 | Plus |
CG13375-PA | 306 | CG13375-PA | 99..210 | 2..120 | 157 | 32.5 | Plus |