Clone LP15968 Report

Search the DGRC for LP15968

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:159
Well:68
Vector:pOT2
Associated Gene/Transcriptsvr-RF
Protein status:LP15968.pep: gold
Sequenced Size:1797

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
svr-RB 2009-06-22 Replacement based on scoring

Clone Sequence Records

LP15968.complete Sequence

1797 bp assembled on 2009-10-13

GenBank Submission: BT100053.1

> LP15968.complete
GCAACGACGACCCACGACGAACGGAGGCCCGACGGACATATAAGAAGAGA
GCGAGTTGTGTGCGGGAGAGAGCTGAGAAGAAGCGGAGGAAAAATAACTG
TTTCTCGCTCAATTCGCACGCCAGTGATAAAAACAACATAATCTCGACAA
GATTGCAAATCGCAAGATGCCAACTCTGGGTCTCCTGTTCGCCTCCATCG
GCATTGCCGTGCTGGCGATGGGTGTGCCGCATTGCAGGGGCTACACCATC
AAGGAGGACGAATCCTTCCTGCAGCAACCGCACTATGCTAGCCAAGAGCA
GCTGGAGGACCTGTTTGCTGGCCTGGAGAAGGCGTACCCCAATCAGGCCA
AAGTCCACTTCCTTGGTCGATCTCTAGAAGGACGAAATCTGCTCGCCCTG
CAAATCTCGCGGAACACCCGGTCGCGGAATCTCCTTACACCTCCAGTAAA
GTACATAGCCAATATGCATGGAGACGAAACGGTGGGCAGGCAGCTCCTTG
TTTATATGGCACAATATCTGCTCGGTAATCACGAAAGAATCAGCGACCTG
GGCCAGCTGGTCAACAGCACCGATATCTACTTGGTGCCCACGATGAATCC
AGATGGCTATGCGTTGTCCCAGGAAGGCAACTGCGAGTCGCTGCCCAACT
ATGTGGGTCGTGGCAATGCGGCCAACATCGATTTGAATCGCGATTTCCCC
GATCGCCTGGAGCAGAGCCATGTCCACCAGTTGCGCGCCCAGTCTCGTCA
GCCGGAAACAGCAGCCCTGGTAAATTGGATCGTTAGCAAACCGTTTGTGC
TCTCCGCCAATTTCCATGGCGGAGCTGTTGTGGCCAGCTATCCCTATGAC
AACTCCTTGGCTCACAATGAGTGCTGCGAGGAGAGTTTGACTCCGGATGA
TCGGGTCTTCAAGCAGCTGGCCCACACCTATTCTGACAACCATCCGATTA
TGAGAAAGGGCAACAATTGCAACGATAGCTTCTCGGGAGGTATCACCAAC
GGAGCCCACTGGTATGAGTTGTCCGGTGGAATGCAGGACTTTAACTATGC
GTTTAGCAACTGTTTCGAGCTGACCATCGAGTTGTCGTGCTGCAAGTATC
CGGCAGCAAGCACTTTGCCCCAGGAATGGCAGCGGAACAAGGCATCCCTG
CTGCAGCTGCTGCGCCAGGCACATATCGGCATCAAGGGCCTGGTGACCGA
TGCCAGTGGCTTTCCAATAGCCGATGCCAATGTCTACGTGGCTGGACTAG
AGGAGAAACCCATGCGCACTTCCAAACGTGGCGAATACTGGAGGCTTTTG
ACCCCGGGACTCTATAGCGTGCACGCCTCCGCTTTTGGTTACCAGACCAG
TGCCCCGCAACAGGTCCGGGTGACCAACGATAACCAGGAGGCCTTGCGCC
TGGACTTTAAGCTTGCGCCCGTCGAGACGAACTTTGATGGTATTAGCAGT
TTTTACAGTCCCTATTATTTCTAGAGAGGGATGCAACGGAAATACCTATA
TATATGCGCATATATATTATATTGGGCAGTTCCAAAATGCTATACATATA
TCCACATTTAGCGATGCATAGTATTCTCTGCTCTCCTGCCCTCTCCGCAC
TATCCTTGTACTATATATGTTATCTCCGCCATTCCCGAATCCAGATATAC
AACCATTTTGCATGTTCATTTGCTCCCTCTCATTTAGAACCTTTATTTGT
TTACCGCGAGAGCTAGCAGAAAATAAACAATGTTGGCTGTCGTGTGGATG
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP15968.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
svr-RF 3143 svr-RF 309..2060 1..1752 8760 100 Plus
svr-RG 5836 svr-RG 309..1748 1..1440 7200 100 Plus
svr.i 3098 svr.i 309..1319 1..1011 5055 100 Plus
svr.i 3098 svr.i 1319..2015 1056..1752 3485 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 394022..394644 1..623 3115 100 Plus
chrX 22417052 chrX 396322..396801 859..1338 2400 100 Plus
chrX 22417052 chrX 396870..397282 1338..1750 2065 100 Plus
chrX 22417052 chrX 396017..396256 620..859 1200 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:57:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 499987..500609 1..623 3115 100 Plus
X 23542271 X 502287..502766 859..1338 2400 100 Plus
X 23542271 X 502835..503249 1338..1752 2075 100 Plus
X 23542271 X 501982..502221 620..859 1200 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 508085..508707 1..623 3115 100 Plus
X 23527363 X 510385..510864 859..1338 2400 100 Plus
X 23527363 X 510933..511347 1338..1752 2075 100 Plus
X 23527363 X 510080..510319 620..859 1200 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:42:18 has no hits.

LP15968.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:43:39 Download gff for LP15968.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 394022..394643 1..622 100 -> Plus
chrX 396020..396255 623..858 100 -> Plus
chrX 396322..396801 859..1338 100 -> Plus
chrX 396871..397282 1339..1750 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:57:53 Download gff for LP15968.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RF 1..1308 167..1474 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:44:08 Download gff for LP15968.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RF 1..1308 167..1474 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:13:16 Download gff for LP15968.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RF 1..1308 167..1474 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:51:28 Download gff for LP15968.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RF 1..1308 167..1474 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-13 12:45:26 Download gff for LP15968.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RF 309..2058 1..1750 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:44:08 Download gff for LP15968.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RF 309..2058 1..1750 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:13:16 Download gff for LP15968.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RF 309..2058 1..1750 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:28 Download gff for LP15968.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RF 309..2058 1..1750 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:39 Download gff for LP15968.complete
Subject Subject Range Query Range Percent Splice Strand
X 499987..500608 1..622 100 -> Plus
X 501985..502220 623..858 100 -> Plus
X 502287..502766 859..1338 100 -> Plus
X 502836..503247 1339..1750 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:39 Download gff for LP15968.complete
Subject Subject Range Query Range Percent Splice Strand
X 499987..500608 1..622 100 -> Plus
X 501985..502220 623..858 100 -> Plus
X 502287..502766 859..1338 100 -> Plus
X 502836..503247 1339..1750 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:39 Download gff for LP15968.complete
Subject Subject Range Query Range Percent Splice Strand
X 499987..500608 1..622 100 -> Plus
X 501985..502220 623..858 100 -> Plus
X 502287..502766 859..1338 100 -> Plus
X 502836..503247 1339..1750 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:13:16 Download gff for LP15968.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 394020..394641 1..622 100 -> Plus
arm_X 396018..396253 623..858 100 -> Plus
arm_X 396320..396799 859..1338 100 -> Plus
arm_X 396869..397280 1339..1750 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:24:52 Download gff for LP15968.complete
Subject Subject Range Query Range Percent Splice Strand
X 508085..508706 1..622 100 -> Plus
X 510083..510318 623..858 100 -> Plus
X 510385..510864 859..1338 100 -> Plus
X 510934..511345 1339..1750 100   Plus

LP15968.hyp Sequence

Translation from 166 to 1473

> LP15968.hyp
MPTLGLLFASIGIAVLAMGVPHCRGYTIKEDESFLQQPHYASQEQLEDLF
AGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANM
HGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYAL
SQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAA
LVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQ
LAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCF
ELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFP
IADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQV
RVTNDNQEALRLDFKLAPVETNFDGISSFYSPYYF*

LP15968.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
svr-PL 435 CG4122-PL 1..435 1..435 2305 100 Plus
svr-PF 435 CG4122-PF 1..435 1..435 2305 100 Plus
svr-PN 1439 CG4122-PN 1..425 1..425 2249 100 Plus
svr-PM 1406 CG4122-PM 1..425 1..425 2249 100 Plus
svr-PG 1439 CG4122-PG 1..425 1..425 2249 100 Plus
svr-PN 1439 CG4122-PN 443..841 29..418 672 37.3 Plus
svr-PM 1406 CG4122-PM 443..841 29..418 672 37.3 Plus

LP15968.pep Sequence

Translation from 166 to 1473

> LP15968.pep
MPTLGLLFASIGIAVLAMGVPHCRGYTIKEDESFLQQPHYASQEQLEDLF
AGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANM
HGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYAL
SQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAA
LVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQ
LAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCF
ELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFP
IADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQV
RVTNDNQEALRLDFKLAPVETNFDGISSFYSPYYF*

LP15968.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21938-PA 1607 GF21938-PA 177..590 12..425 1898 82.9 Plus
Dana\GF22654-PA 488 GF22654-PA 75..446 40..418 793 41 Plus
Dana\GF21938-PA 1607 GF21938-PA 627..1004 46..416 684 37.8 Plus
Dana\GF21938-PA 1607 GF21938-PA 33..162 27..152 272 40.8 Plus
Dana\GF10640-PA 440 GF10640-PA 145..407 39..306 187 27 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12791-PA 1589 GG12791-PA 151..575 1..425 2242 97.2 Plus
Dere\GG19068-PA 517 GG19068-PA 76..447 40..418 791 40.8 Plus
Dere\GG12791-PA 1589 GG12791-PA 612..991 46..418 666 38.1 Plus
Dere\GG12791-PA 1589 GG12791-PA 22..150 27..152 273 41.9 Plus
Dere\GG14422-PA 440 GG14422-PA 145..395 39..295 190 26.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24780-PA 1441 GH24780-PA 22..422 25..425 1865 83.5 Plus
Dgri\GH12395-PA 510 GH12395-PA 60..467 16..434 797 38.7 Plus
Dgri\GH24780-PA 1441 GH24780-PA 438..820 28..402 700 39.5 Plus
Dgri\GH24779-PA 182 GH24779-PA 41..181 27..152 265 36.9 Plus
Dgri\GH14880-PA 437 GH14880-PA 140..413 34..315 185 26.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
svr-PL 435 CG4122-PL 1..435 1..435 2305 100 Plus
svr-PF 435 CG4122-PF 1..435 1..435 2305 100 Plus
svr-PN 1439 CG4122-PN 1..425 1..425 2249 100 Plus
svr-PM 1406 CG4122-PM 1..425 1..425 2249 100 Plus
svr-PG 1439 CG4122-PG 1..425 1..425 2249 100 Plus
svr-PB 1406 CG4122-PB 1..425 1..425 2249 100 Plus
svr-PJ 433 CG4122-PJ 23..433 28..435 1808 82.2 Plus
svr-PE 433 CG4122-PE 23..433 28..435 1808 82.2 Plus
svr-PH 1437 CG4122-PH 23..423 28..425 1752 81.8 Plus
svr-PD 1404 CG4122-PD 23..423 28..425 1752 81.8 Plus
svr-PI 1292 CG4122-PI 6..278 153..425 1466 100 Plus
CG4678-PL 474 CG4678-PL 72..443 40..418 771 40.8 Plus
CG4678-PI 513 CG4678-PI 72..443 40..418 771 40.8 Plus
CG4678-PF 479 CG4678-PF 72..448 40..418 762 40 Plus
CG4678-PD 518 CG4678-PD 72..448 40..418 762 40 Plus
CG4678-PJ 523 CG4678-PJ 72..453 40..418 761 39.7 Plus
CG4678-PG 488 CG4678-PG 72..457 40..418 754 39.1 Plus
CG4678-PE 527 CG4678-PE 72..457 40..418 754 39.1 Plus
CG4678-PK 404 CG4678-PK 15..334 92..418 714 43.5 Plus
svr-PN 1439 CG4122-PN 443..841 29..418 672 37.3 Plus
svr-PM 1406 CG4122-PM 443..841 29..418 672 37.3 Plus
svr-PG 1439 CG4122-PG 443..841 29..418 672 37.3 Plus
svr-PB 1406 CG4122-PB 443..841 29..418 672 37.3 Plus
svr-PH 1437 CG4122-PH 441..839 29..418 672 37.3 Plus
svr-PD 1404 CG4122-PD 441..839 29..418 672 37.3 Plus
svr-PI 1292 CG4122-PI 296..694 29..418 672 37.3 Plus
CG8563-PB 440 CG8563-PB 145..394 39..294 203 27.4 Plus
CG8563-PA 440 CG8563-PA 145..394 39..294 203 27.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15159-PA 1454 GI15159-PA 28..429 27..425 1595 70.1 Plus
Dmoj\GI14727-PA 437 GI14727-PA 56..425 40..416 793 41.3 Plus
Dmoj\GI15159-PA 1454 GI15159-PA 466..843 46..416 698 39.3 Plus
Dmoj\GI12853-PA 445 GI12853-PA 136..400 21..295 186 27.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20387-PA 1455 GL20387-PA 6..424 7..425 2008 86.2 Plus
Dper\GL26857-PA 537 GL26857-PA 54..462 19..416 731 37.1 Plus
Dper\GL20387-PA 1455 GL20387-PA 461..840 46..418 680 40.1 Plus
Dper\GL20386-PA 164 GL20386-PA 33..161 27..152 301 45.7 Plus
Dper\GL26374-PA 438 GL26374-PA 143..393 39..295 205 27.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29134-PA 1455 GA29134-PA 6..424 7..425 2015 86.6 Plus
Dpse\GA18350-PA 514 GA18350-PA 54..441 19..416 781 39.5 Plus
Dpse\GA29134-PA 1455 GA29134-PA 461..840 46..418 679 40.1 Plus
Dpse\GA29125-PA 164 GA29125-PA 33..161 27..152 300 45.7 Plus
Dpse\GA21166-PA 438 GA21166-PA 143..393 39..295 205 27.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19071-PA 1371 GM19071-PA 7..357 76..425 1652 86.6 Plus
Dsec\GM19071-PA 1371 GM19071-PA 394..773 46..418 678 38.9 Plus
Dsec\GM13459-PA 449 GM13459-PA 72..253 40..230 390 39.8 Plus
Dsec\GM14839-PA 440 GM14839-PA 145..395 39..295 201 27.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16509-PA 1439 GD16509-PA 1..425 1..425 2276 98.6 Plus
Dsim\GD16509-PA 1439 GD16509-PA 462..841 46..418 676 38.9 Plus
Dsim\GD17299-PA 258 GD17299-PA 72..253 40..230 389 39.8 Plus
Dsim\GD24843-PA 187 GD24843-PA 1..156 262..418 350 41.9 Plus
Dsim\GD14012-PA 440 GD14012-PA 145..395 39..295 201 27.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14862-PA 1437 GJ14862-PA 5..417 13..425 1879 83.1 Plus
Dvir\GJ19439-PA 517 GJ19439-PA 34..424 16..416 795 40 Plus
Dvir\GJ14862-PA 1437 GJ14862-PA 450..831 39..416 688 40.4 Plus
Dvir\GJ14861-PA 164 GJ14861-PA 29..162 22..152 266 36.6 Plus
Dvir\GJ12997-PA 437 GJ12997-PA 142..392 39..295 198 27.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16509-PA 1452 GK16509-PA 33..429 29..425 1837 82.4 Plus
Dwil\GK25411-PA 474 GK25411-PA 66..437 40..418 796 41.3 Plus
Dwil\GK16509-PA 1452 GK16509-PA 466..843 46..416 670 38 Plus
Dwil\GK16508-PA 215 GK16508-PA 46..176 27..152 274 39.7 Plus
Dwil\GK17379-PA 448 GK17379-PA 153..403 39..295 209 28 Plus
Dwil\GK25782-PA 446 GK25782-PA 150..346 39..227 155 24.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16618-PA 1439 GE16618-PA 1..425 1..425 2238 96.5 Plus
Dyak\GE17613-PA 513 GE17613-PA 74..445 40..418 790 40.8 Plus
Dyak\GE16618-PA 1439 GE16618-PA 462..841 46..418 667 38.6 Plus
Dyak\GE16617-PA 153 GE16617-PA 23..151 27..152 280 42.6 Plus
Dyak\GE21613-PA 440 GE21613-PA 145..395 39..295 202 27.7 Plus